Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:50:42 (65000): wrapper (7.7.26015): starting
07:50:42 (65000): wrapper: running run_atlas (--nthreads 4)
[2026-03-10 07:50:42] Arguments: --nthreads 4
[2026-03-10 07:50:42] Threads: 4
[2026-03-10 07:50:42] Checking for CVMFS
[2026-03-10 07:50:42] No cvmfs_config command found, will try listing directly
[2026-03-10 07:50:42] CVMFS is ok
[2026-03-10 07:50:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-10 07:50:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-10 07:50:42] Further information can be found at the LHC@home message board.
[2026-03-10 07:50:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-10 07:50:42] Checking for apptainer binary...
[2026-03-10 07:50:42] which: no apptainer in ((null))
[2026-03-10 07:50:42] apptainer is not installed, using version from CVMFS
[2026-03-10 07:50:42] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-10 07:50:42] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot52/slots/9/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut26.grid.cesnet.cz
[2026-03-10 07:50:42] apptainer works
[2026-03-10 07:50:42] Set ATHENA_PROC_NUMBER=4
[2026-03-10 07:50:42] Set ATHENA_CORE_NUMBER=4
[2026-03-10 07:50:42] Starting ATLAS job with PandaID=7040898955
[2026-03-10 07:50:42] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot52/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-10 09:08:07]  *** The last 200 lines of the pilot log: ***
[2026-03-10 09:08:07] 2026-03-10 08:07:19,281 | INFO     | adding to output.list: log.48955010._019273.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/63/47/log.48955010._019273.job.log.tg
[2026-03-10 09:08:07] 2026-03-10 08:07:19,282 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-10 09:08:07] 2026-03-10 08:07:19,282 | INFO     | summary of transferred files:
[2026-03-10 09:08:07] 2026-03-10 08:07:19,282 | INFO     |  -- lfn=log.48955010._019273.job.log.tgz.1, status_code=0, status=transferred
[2026-03-10 09:08:07] 2026-03-10 08:07:19,282 | INFO     | stage-out finished correctly
[2026-03-10 09:08:07] 2026-03-10 08:07:20,391 | INFO     | time since job start (4586s) is within the limit (349056.0s)
[2026-03-10 09:08:07] 2026-03-10 08:07:21,679 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-10 09:08:07] 2026-03-10 08:07:21,929 | INFO     | PID=69552 has CPU usage=8.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-10 09:08:07] 2026-03-10 08:07:21,929 | INFO     | .. there are 55 such processes running
[2026-03-10 09:08:07] 2026-03-10 08:07:22,929 | INFO     | time since job start (4588s) is within the limit (349056.0s)
[2026-03-10 09:08:07] 2026-03-10 08:07:23,788 | INFO     | job 7040898955 has state=finished
[2026-03-10 09:08:07] 2026-03-10 08:07:23,788 | INFO     | preparing for final server update for job 7040898955 in state='finished'
[2026-03-10 09:08:07] 2026-03-10 08:07:23,788 | INFO     | reading metadata from: /var/lib/boinc/var/slot52/slots/9/PanDA_Pilot-7040898955/jobReport.json
[2026-03-10 09:08:07] 2026-03-10 08:07:23,789 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot52/slots/9/workernode_map.json
[2026-03-10 09:08:07] 2026-03-10 08:07:23,790 | INFO     | this job has now completed (state=finished)
[2026-03-10 09:08:07] 2026-03-10 08:07:23,794 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-10 09:08:07] 2026-03-10 08:07:23,794 | INFO     | log transfer has been attempted: DONE
[2026-03-10 09:08:07] 2026-03-10 08:07:23,794 | INFO     | job 7040898955 has finished - writing final server update
[2026-03-10 09:08:07] 2026-03-10 08:07:23,794 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_652159/.job.ad'
[2026-03-10 09:08:07] 2026-03-10 08:07:23,794 | INFO     | total number of processed events: 400 (read)
[2026-03-10 09:08:07] 2026-03-10 08:07:23,817 | INFO     | using path: /var/lib/boinc/var/slot52/slots/9/PanDA_Pilot-7040898955/memory_monitor_summary.json (trf name=prmon)
[2026-03-10 09:08:07] 2026-03-10 08:07:23,817 | INFO     | extracted standard info from prmon json
[2026-03-10 09:08:07] 2026-03-10 08:07:23,817 | INFO     | extracted standard memory fields from prmon json
[2026-03-10 09:08:07] 2026-03-10 08:07:23,817 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-10 09:08:07] 2026-03-10 08:07:23,817 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-10 09:08:07] 2026-03-10 08:07:23,817 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-10 09:08:07] 2026-03-10 08:07:23,819 | INFO     | fitting pss+swap vs Time
[2026-03-10 09:08:07] 2026-03-10 08:07:23,819 | INFO     | sum of square deviations: 97479037.0
[2026-03-10 09:08:07] 2026-03-10 08:07:23,819 | INFO     | sum of deviations: 378710874.99999994
[2026-03-10 09:08:07] 2026-03-10 08:07:23,819 | INFO     | mean x: 1773127822.5
[2026-03-10 09:08:07] 2026-03-10 08:07:23,819 | INFO     | mean y: 2328379.705882353
[2026-03-10 09:08:07] 2026-03-10 08:07:23,819 | INFO     | intersect: -6886360817.601428
[2026-03-10 09:08:07] 2026-03-10 08:07:23,819 | INFO     | chi2: 0.00018988834870368331
[2026-03-10 09:08:07] 2026-03-10 08:07:23,819 | INFO     | current memory leak: 3.89 B/s (using 68 data points, chi2=0.00)
[2026-03-10 09:08:07] 2026-03-10 08:07:23,819 | INFO     | could have reported an average CPU frequency of 3603 MHz (6 samples)
[2026-03-10 09:08:07] 2026-03-10 08:07:23,819 | INFO     | ..............................
[2026-03-10 09:08:07] 2026-03-10 08:07:23,820 | INFO     | . Timing measurements:
[2026-03-10 09:08:07] 2026-03-10 08:07:23,820 | INFO     | . get job = 0 s
[2026-03-10 09:08:07] 2026-03-10 08:07:23,820 | INFO     | . initial setup = 4 s
[2026-03-10 09:08:07] 2026-03-10 08:07:23,820 | INFO     | . payload setup = 4 s
[2026-03-10 09:08:07] 2026-03-10 08:07:23,820 | INFO     | . stage-in = 0 s
[2026-03-10 09:08:07] 2026-03-10 08:07:23,820 | INFO     | . payload execution = 4565 s
[2026-03-10 09:08:07] 2026-03-10 08:07:23,820 | INFO     | . stage-out = 0 s
[2026-03-10 09:08:07] 2026-03-10 08:07:23,820 | INFO     | . log creation = 0 s
[2026-03-10 09:08:07] 2026-03-10 08:07:23,820 | INFO     | ..............................
[2026-03-10 09:08:07] 2026-03-10 08:07:23,921 | WARNING  | process 75383 can no longer be monitored (due to stat problems) - aborting
[2026-03-10 09:08:07] 2026-03-10 08:07:23,921 | INFO     | using path: /var/lib/boinc/var/slot52/slots/9/PanDA_Pilot-7040898955/memory_monitor_summary.json (trf name=prmon)
[2026-03-10 09:08:07] 2026-03-10 08:07:23,921 | INFO     | using path: /var/lib/boinc/var/slot52/slots/9/PanDA_Pilot-7040898955/memory_monitor_summary.json (trf name=prmon)
[2026-03-10 09:08:07] 2026-03-10 08:07:23,922 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-10 09:08:07] 2026-03-10 08:07:23,922 | WARNING  | maxPSS not found in memory monitor output
[2026-03-10 09:08:07] 2026-03-10 08:07:23,922 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2839636 B
[2026-03-10 09:08:07] 2026-03-10 08:07:23,922 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15853 B
[2026-03-10 09:08:07] 2026-03-10 08:07:23,922 | INFO     | executing command: df -mP /var/lib/boinc/var/slot52/slots/9
[2026-03-10 09:08:07] 2026-03-10 08:07:23,940 | INFO     | sufficient remaining disk space (19821232128 B)
[2026-03-10 09:08:07] 2026-03-10 08:07:23,940 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-03-10 09:08:07] 2026-03-10 08:07:23,941 | INFO     | size of work directory /var/lib/boinc/var/slot52/slots/9/PanDA_Pilot-7040898955: 3138528 B (within 5033164800 B limit)
[2026-03-10 09:08:07] 2026-03-10 08:07:23,941 | INFO     | pfn file=/var/lib/boinc/var/slot52/slots/9/PanDA_Pilot-7040898955/HITS.48955010._019273.pool.root.1 does not exist (skip from workdir size calculation)
[2026-03-10 09:08:07] 2026-03-10 08:07:23,941 | INFO     | total size of present files: 0 B (workdir size: 3138528 B)
[2026-03-10 09:08:07] 2026-03-10 08:07:23,941 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot52/slots/9/PanDA_Pilot-7040898955/HITS.48955010._019273.pool.root.1 since it does not exist
[2026-03-10 09:08:07] 2026-03-10 08:07:24,185 | INFO     | 
[2026-03-10 09:08:07] 2026-03-10 08:07:24,186 | INFO     | job summary report
[2026-03-10 09:08:07] 2026-03-10 08:07:24,186 | INFO     | --------------------------------------------------
[2026-03-10 09:08:07] 2026-03-10 08:07:24,186 | INFO     | PanDA job id: 7040898955
[2026-03-10 09:08:07] 2026-03-10 08:07:24,186 | INFO     | task id: 48955010
[2026-03-10 09:08:07] 2026-03-10 08:07:24,186 | INFO     | errors: (none)
[2026-03-10 09:08:07] 2026-03-10 08:07:24,186 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-10 09:08:07] 2026-03-10 08:07:24,186 | INFO     | pilot state: finished 
[2026-03-10 09:08:07] 2026-03-10 08:07:24,186 | INFO     | transexitcode: 0
[2026-03-10 09:08:07] 2026-03-10 08:07:24,186 | INFO     | exeerrorcode: 0
[2026-03-10 09:08:07] 2026-03-10 08:07:24,186 | INFO     | exeerrordiag: 
[2026-03-10 09:08:07] 2026-03-10 08:07:24,186 | INFO     | exitcode: 0
[2026-03-10 09:08:07] 2026-03-10 08:07:24,186 | INFO     | exitmsg: OK
[2026-03-10 09:08:07] 2026-03-10 08:07:24,186 | INFO     | cpuconsumptiontime: 17527 s
[2026-03-10 09:08:07] 2026-03-10 08:07:24,186 | INFO     | nevents: 400
[2026-03-10 09:08:07] 2026-03-10 08:07:24,186 | INFO     | neventsw: 0
[2026-03-10 09:08:07] 2026-03-10 08:07:24,186 | INFO     | pid: 75383
[2026-03-10 09:08:07] 2026-03-10 08:07:24,186 | INFO     | pgrp: 75383
[2026-03-10 09:08:07] 2026-03-10 08:07:24,186 | INFO     | corecount: 4
[2026-03-10 09:08:07] 2026-03-10 08:07:24,186 | INFO     | event service: False
[2026-03-10 09:08:07] 2026-03-10 08:07:24,186 | INFO     | sizes: {0: 2280188, 11: 2280188, 4573: 2306386, 4574: 2315406, 4576: 2315462, 4579: 2315656}
[2026-03-10 09:08:07] 2026-03-10 08:07:24,186 | INFO     | --------------------------------------------------
[2026-03-10 09:08:07] 2026-03-10 08:07:24,186 | INFO     | 
[2026-03-10 09:08:07] 2026-03-10 08:07:24,187 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot52/slots/9
[2026-03-10 09:08:07] 2026-03-10 08:07:24,204 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-10 09:08:07] 2026-03-10 08:07:24,204 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-10 09:08:07] 2026-03-10 08:07:24,204 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-10 09:08:07] 2026-03-10 08:07:24,204 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-10 09:08:07] 2026-03-10 08:07:24,204 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-10 09:08:07] 2026-03-10 08:07:24,204 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-10 09:08:07] 2026-03-10 08:07:24,205 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-10 09:08:07] 2026-03-10 08:07:24,205 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-10 09:08:07] 2026-03-10 08:07:24,205 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-10 09:08:07] 2026-03-10 08:07:24,205 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-10 09:08:07] 2026-03-10 08:07:24,205 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-10 09:08:07] 2026-03-10 08:07:24,205 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-10 09:08:07] 2026-03-10 08:07:24,205 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-10 09:08:07] 2026-03-10 08:07:24,205 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-10 09:08:07] 2026-03-10 08:07:24,205 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-10 09:08:07] 2026-03-10 08:07:24,205 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-10 09:08:07] 2026-03-10 08:07:24,205 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-10 09:08:07] 2026-03-10 08:07:24,205 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-10 09:08:07] 2026-03-10 08:07:24,205 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-10 09:08:07] 2026-03-10 08:07:24,205 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-10 09:08:07] 2026-03-10 08:07:24,205 | INFO     | job 7040898955 has completed (purged errors)
[2026-03-10 09:08:07] 2026-03-10 08:07:24,205 | INFO     | overall cleanup function is called
[2026-03-10 09:08:07] 2026-03-10 08:07:24,370 | INFO     | number of running child processes to parent process 75383: 1
[2026-03-10 09:08:07] 2026-03-10 08:07:24,370 | INFO     | maximum number of monitored processes: 6
[2026-03-10 09:08:07] 2026-03-10 08:07:24,370 | INFO     | aborting job monitoring since job object (job id=7040898955) has expired
[2026-03-10 09:08:07] 2026-03-10 08:07:25,212 | INFO     | --- collectZombieJob: --- 10, [75383]
[2026-03-10 09:08:07] 2026-03-10 08:07:25,213 | INFO     | zombie collector waiting for pid 75383
[2026-03-10 09:08:07] 2026-03-10 08:07:25,213 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-10 09:08:07] 2026-03-10 08:07:25,213 | INFO     | collected zombie processes
[2026-03-10 09:08:07] 2026-03-10 08:07:25,213 | INFO     | will attempt to kill all subprocesses of pid=75383
[2026-03-10 09:08:07] 2026-03-10 08:07:25,611 | INFO     | process IDs to be killed: [75383] (in reverse order)
[2026-03-10 09:08:07] 2026-03-10 08:07:25,808 | WARNING  | found no corresponding commands to process id(s)
[2026-03-10 09:08:07] 2026-03-10 08:07:25,809 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-10 09:08:07] 2026-03-10 08:07:25,833 | INFO     | did not find any defunct processes belonging to 75383
[2026-03-10 09:08:07] 2026-03-10 08:07:25,856 | INFO     | did not find any defunct processes belonging to 75383
[2026-03-10 09:08:07] 2026-03-10 08:07:25,856 | INFO     | ready for new job
[2026-03-10 09:08:07] 2026-03-10 08:07:25,856 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-10 09:08:07] 2026-03-10 08:07:25,857 | INFO     | **************************************
[2026-03-10 09:08:07] 2026-03-10 08:07:25,857 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-10 09:08:07] 2026-03-10 08:07:25,857 | INFO     | **************************************
[2026-03-10 09:08:07] 2026-03-10 08:07:25,857 | INFO     | 
[2026-03-10 09:08:07] 2026-03-10 08:07:25,863 | INFO     | architecture information:
[2026-03-10 09:08:07] 2026-03-10 08:07:25,863 | INFO     | executing command: cat /etc/os-release
[2026-03-10 09:08:07] 2026-03-10 08:07:25,876 | INFO     | cat /etc/os-release:
[2026-03-10 09:08:07] NAME="CentOS Linux"
[2026-03-10 09:08:07] VERSION="7 (Core)"
[2026-03-10 09:08:07] ID="centos"
[2026-03-10 09:08:07] ID_LIKE="rhel fedora"
[2026-03-10 09:08:07] VERSION_ID="7"
[2026-03-10 09:08:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-10 09:08:07] ANSI_COLOR="0;31"
[2026-03-10 09:08:07] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-10 09:08:07] HOME_URL="https://www.centos.org/"
[2026-03-10 09:08:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-10 09:08:07] 
[2026-03-10 09:08:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-10 09:08:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-10 09:08:07] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-10 09:08:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-10 09:08:07] 
[2026-03-10 09:08:07] 2026-03-10 08:07:25,876 | INFO     | **************************************
[2026-03-10 09:08:07] 2026-03-10 08:07:26,379 | INFO     | executing command: df -mP /var/lib/boinc/var/slot52/slots/9
[2026-03-10 09:08:07] 2026-03-10 08:07:26,394 | INFO     | sufficient remaining disk space (19812843520 B)
[2026-03-10 09:08:07] 2026-03-10 08:07:26,395 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-10 09:08:07] 2026-03-10 08:07:26,395 | INFO     | current server update state: UPDATING_FINAL
[2026-03-10 09:08:07] 2026-03-10 08:07:26,395 | INFO     | update_server=False
[2026-03-10 09:08:07] 2026-03-10 08:07:26,395 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-10 09:08:07] 2026-03-10 08:07:26,691 | INFO     | all payload control threads have been joined
[2026-03-10 09:08:07] 2026-03-10 08:07:26,873 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-10 09:08:07] 2026-03-10 08:07:26,874 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-10 09:08:07] 2026-03-10 08:07:26,874 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-10 09:08:07] 2026-03-10 08:07:26,874 | INFO     | will abort loop
[2026-03-10 09:08:07] 2026-03-10 08:07:26,981 | INFO     | all data control threads have been joined
[2026-03-10 09:08:07] 2026-03-10 08:07:26,986 | INFO     | all job control threads have been joined
[2026-03-10 09:08:07] 2026-03-10 08:07:27,337 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-10 09:08:07] 2026-03-10 08:07:27,399 | INFO     | [job] retrieve thread has finished
[2026-03-10 09:08:07] 2026-03-10 08:07:27,665 | INFO     | [payload] failed_post thread has finished
[2026-03-10 09:08:07] 2026-03-10 08:07:27,695 | INFO     | [payload] control thread has finished
[2026-03-10 09:08:07] 2026-03-10 08:07:27,732 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-10 09:08:07] 2026-03-10 08:07:27,879 | INFO     | [job] job monitor thread has finished
[2026-03-10 09:08:07] 2026-03-10 08:07:27,986 | INFO     | [data] control thread has finished
[2026-03-10 09:08:07] 2026-03-10 08:07:27,991 | INFO     | [job] control thread has finished
[2026-03-10 09:08:07] 2026-03-10 08:07:28,163 | INFO     | [payload] execute_payloads thread has finished
[2026-03-10 09:08:07] 2026-03-10 08:07:28,228 | INFO     | [job] validate thread has finished
[2026-03-10 09:08:07] 2026-03-10 08:07:28,239 | INFO     | [job] create_data_payload thread has finished
[2026-03-10 09:08:07] 2026-03-10 08:07:28,284 | INFO     | [payload] validate_pre thread has finished
[2026-03-10 09:08:07] 2026-03-10 08:07:28,512 | INFO     | [data] copytool_in thread has finished
[2026-03-10 09:08:07] 2026-03-10 08:07:28,814 | INFO     | [payload] validate_post thread has finished
[2026-03-10 09:08:07] 2026-03-10 08:07:28,876 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-10 09:08:07] 2026-03-10 08:07:29,342 | INFO     | [data] copytool_out thread has finished
[2026-03-10 09:08:07] 2026-03-10 08:07:29,881 | INFO     | [job] queue monitor thread has finished
[2026-03-10 09:08:07] 2026-03-10 08:07:31,738 | INFO     | [data] queue_monitor thread has finished
[2026-03-10 09:08:07] 2026-03-10 08:07:37,437 | INFO     | job.realtimelogging is not enabled
[2026-03-10 09:08:07] 2026-03-10 08:07:38,442 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-10 09:08:07] 2026-03-10 08:07:56,474 | INFO     | PID=69552 has CPU usage=5.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-10 09:08:07] 2026-03-10 08:07:56,474 | INFO     | .. there are 55 such processes running
[2026-03-10 09:08:07] 2026-03-10 08:07:56,474 | INFO     | found 0 job(s) in 20 queues
[2026-03-10 09:08:07] 2026-03-10 08:07:56,475 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-10 09:08:07] 2026-03-10 08:07:56,475 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-10 09:08:07] 2026-03-10 08:08:01,241 | INFO     | [monitor] cgroup control has ended
[2026-03-10 09:08:07] 2026-03-10 08:08:02,110 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23283441137472)>', '<ExcThread(monitor, started 23283201484544)>']
[2026-03-10 09:08:07] 2026-03-10 08:08:02,503 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-10 09:08:07] 2026-03-10 08:08:02,503 | INFO     | [monitor] control thread has ended
[2026-03-10 09:08:07] 2026-03-10 08:08:07,135 | INFO     | all workflow threads have been joined
[2026-03-10 09:08:07] 2026-03-10 08:08:07,136 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-10 09:08:07] 2026-03-10 08:08:07,136 | INFO     | traces error code: 0
[2026-03-10 09:08:07] 2026-03-10 08:08:07,136 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-10 09:08:07] 2026-03-10 08:08:07,251 [wrapper] ==== pilot stdout END ====
[2026-03-10 09:08:07] 2026-03-10 08:08:07,255 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-10 09:08:07] 2026-03-10 08:08:07,257 [wrapper] pilotpid: 69552
[2026-03-10 09:08:07] 2026-03-10 08:08:07,259 [wrapper] Pilot exit status: 0
[2026-03-10 09:08:07] 2026-03-10 08:08:07,266 [wrapper] pandaids: 7040898955
[2026-03-10 09:08:07] 2026-03-10 08:08:07,373 [wrapper] cleanup supervisor_pilot  920350 69553
[2026-03-10 09:08:07] 2026-03-10 08:08:07,375 [wrapper] Test setup, not cleaning
[2026-03-10 09:08:07] 2026-03-10 08:08:07,378 [wrapper] apfmon messages muted
[2026-03-10 09:08:07] 2026-03-10 08:08:07,380 [wrapper] ==== wrapper stdout END ====
[2026-03-10 09:08:07] 2026-03-10 08:08:07,382 [wrapper] ==== wrapper stderr END ====
[2026-03-10 09:08:07]  *** Error codes and diagnostics ***
[2026-03-10 09:08:07]     "exeErrorCode": 0,
[2026-03-10 09:08:07]     "exeErrorDiag": "",
[2026-03-10 09:08:07]     "pilotErrorCode": 0,
[2026-03-10 09:08:07]     "pilotErrorDiag": "",
[2026-03-10 09:08:07]  *** Listing of results directory ***
[2026-03-10 09:08:07] total 616188
[2026-03-10 09:08:07] -rw-r--r--. 1 boinc boinc      5111 Mar  9 17:24 queuedata.json
[2026-03-10 09:08:07] -rw-r--r--. 1 boinc boinc    584627 Mar  9 17:24 pilot3.tar.gz
[2026-03-10 09:08:07] -rwx------. 1 boinc boinc     36322 Mar  9 17:24 runpilot2-wrapper.sh
[2026-03-10 09:08:07] -rw-r--r--. 1 boinc boinc       100 Mar 10 07:50 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-10 09:08:07] -rwxr-xr-x. 1 boinc boinc      7986 Mar 10 07:50 run_atlas
[2026-03-10 09:08:07] -rw-r--r--. 1 boinc boinc       105 Mar 10 07:50 job.xml
[2026-03-10 09:08:07] -rw-r--r--. 1 boinc boinc      6704 Mar 10 07:50 init_data.xml
[2026-03-10 09:08:07] -rw-r--r--. 2 boinc boinc 438555315 Mar 10 07:50 EVNT.46701403._001385.pool.root.1
[2026-03-10 09:08:07] -rw-r--r--. 2 boinc boinc     15845 Mar 10 07:50 start_atlas.sh
[2026-03-10 09:08:07] drwxrwx--x. 2 boinc boinc      4096 Mar 10 07:50 shared
[2026-03-10 09:08:07] -rw-r--r--. 2 boinc boinc    597949 Mar 10 07:50 input.tar.gz
[2026-03-10 09:08:07] -rw-r--r--. 1 boinc boinc         0 Mar 10 07:50 boinc_lockfile
[2026-03-10 09:08:07] -rw-r--r--. 1 boinc boinc      2562 Mar 10 07:50 pandaJob.out
[2026-03-10 09:08:07] -rw-------. 1 boinc boinc   1005065 Mar 10 07:50 agis_schedconf.cvmfs.json
[2026-03-10 09:08:07] -rw-------. 1 boinc boinc   1511578 Mar 10 07:50 agis_ddmendpoints.agis.ALL.json
[2026-03-10 09:08:07] -rw-------. 1 boinc boinc       436 Mar 10 07:50 workernode_map.json
[2026-03-10 09:08:07] drwx------. 5 boinc boinc      4096 Mar 10 07:50 pilot3
[2026-03-10 09:08:07] -rw-r--r--. 1 boinc boinc       531 Mar 10 09:06 boinc_task_state.xml
[2026-03-10 09:08:07] -rw-------. 1 boinc boinc 186567356 Mar 10 09:06 HITS.48955010._019273.pool.root.1
[2026-03-10 09:08:07] -rw-------. 1 boinc boinc      1030 Mar 10 09:07 memory_monitor_summary.json
[2026-03-10 09:08:07] -rw-------. 1 boinc boinc    279340 Mar 10 09:07 log.48955010._019273.job.log.tgz.1
[2026-03-10 09:08:07] -rw-------. 1 boinc boinc      6356 Mar 10 09:07 heartbeat.json
[2026-03-10 09:08:07] -rw-r--r--. 1 boinc boinc      8192 Mar 10 09:07 boinc_mmap_file
[2026-03-10 09:08:07] -rw-r--r--. 1 boinc boinc        27 Mar 10 09:07 wrapper_checkpoint.txt
[2026-03-10 09:08:07] -rw-------. 1 boinc boinc        95 Mar 10 09:07 pilot_heartbeat.json
[2026-03-10 09:08:07] -rw-------. 1 boinc boinc      5085 Mar 10 09:08 pilotlog.txt
[2026-03-10 09:08:07] -rw-------. 1 boinc boinc    677877 Mar 10 09:08 log.48955010._019273.job.log.1
[2026-03-10 09:08:07] -rw-------. 1 boinc boinc       357 Mar 10 09:08 output.list
[2026-03-10 09:08:07] -rw-r--r--. 1 boinc boinc       620 Mar 10 09:08 runtime_log
[2026-03-10 09:08:07] -rw-------. 1 boinc boinc    972800 Mar 10 09:08 result.tar.gz
[2026-03-10 09:08:07] -rw-r--r--. 1 boinc boinc      9204 Mar 10 09:08 runtime_log.err
[2026-03-10 09:08:07] -rw-------. 1 boinc boinc       662 Mar 10 09:08 VUCLDmhasJ9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmN0cLDmrA3cGn.diag
[2026-03-10 09:08:07] -rw-r--r--. 1 boinc boinc     22515 Mar 10 09:08 stderr.txt
[2026-03-10 09:08:07] HITS file was successfully produced:
[2026-03-10 09:08:07] -rw-------. 1 boinc boinc 186567356 Mar 10 09:06 shared/HITS.pool.root.1
[2026-03-10 09:08:07]  *** Contents of shared directory: ***
[2026-03-10 09:08:07] total 612036
[2026-03-10 09:08:07] -rw-r--r--. 2 boinc boinc 438555315 Mar 10 07:50 ATLAS.root_0
[2026-03-10 09:08:07] -rw-r--r--. 2 boinc boinc     15845 Mar 10 07:50 start_atlas.sh
[2026-03-10 09:08:07] -rw-r--r--. 2 boinc boinc    597949 Mar 10 07:50 input.tar.gz
[2026-03-10 09:08:07] -rw-------. 1 boinc boinc 186567356 Mar 10 09:06 HITS.pool.root.1
[2026-03-10 09:08:07] -rw-------. 1 boinc boinc    972800 Mar 10 09:08 result.tar.gz
09:08:08 (65000): run_atlas exited; CPU time 17714.979669
09:08:08 (65000): called boinc_finish(0)

</stderr_txt>
]]>

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