Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:20:46 (1539899): wrapper (7.7.26015): starting
07:20:46 (1539899): wrapper: running run_atlas (--nthreads 4)
[2026-03-10 07:20:46] Arguments: --nthreads 4
[2026-03-10 07:20:46] Threads: 4
[2026-03-10 07:20:46] Checking for CVMFS
[2026-03-10 07:20:46] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-10 07:20:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-10 07:20:46] Running cvmfs_config stat atlas.cern.ch
[2026-03-10 07:20:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-10 07:20:46] 2.9.2.0 3039 8499 100728 157105 2 49 29604453 36864001 0 130560 0 4304555 99.986 315581 11511 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-10 07:20:46] CVMFS is ok
[2026-03-10 07:20:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-10 07:20:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-10 07:20:46] Further information can be found at the LHC@home message board.
[2026-03-10 07:20:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-10 07:20:46] Checking for apptainer binary...
[2026-03-10 07:20:46] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-10 07:20:46] Running /usr/bin/apptainer --version
[2026-03-10 07:20:46] apptainer version 1.4.1-1.1
[2026-03-10 07:20:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-10 07:20:47] thA334
[2026-03-10 07:20:47] apptainer works
[2026-03-10 07:20:47] Set ATHENA_PROC_NUMBER=4
[2026-03-10 07:20:47] Set ATHENA_CORE_NUMBER=4
[2026-03-10 07:20:47] Starting ATLAS job with PandaID=7040863938
[2026-03-10 07:20:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-10 08:28:15]  *** The last 200 lines of the pilot log: ***
[2026-03-10 08:28:15] 2026-03-10 07:27:42,393 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-10 08:28:15] 2026-03-10 07:27:42,393 | INFO     | job 7040863938 has completed (purged errors)
[2026-03-10 08:28:15] 2026-03-10 07:27:42,393 | INFO     | overall cleanup function is called
[2026-03-10 08:28:15] 2026-03-10 07:27:42,896 | WARNING  | process 1548511 can no longer be monitored (due to stat problems) - aborting
[2026-03-10 08:28:15] 2026-03-10 07:27:42,927 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-10 08:28:15] 2026-03-10 07:27:42,966 | INFO     | number of running child processes to parent process 1548511: 1
[2026-03-10 08:28:15] 2026-03-10 07:27:42,966 | INFO     | maximum number of monitored processes: 6
[2026-03-10 08:28:15] 2026-03-10 07:27:42,966 | INFO     | aborting job monitoring since job object (job id=7040863938) has expired
[2026-03-10 08:28:15] 2026-03-10 07:27:43,400 | INFO     | --- collectZombieJob: --- 10, [1548511]
[2026-03-10 08:28:15] 2026-03-10 07:27:43,400 | INFO     | zombie collector waiting for pid 1548511
[2026-03-10 08:28:15] 2026-03-10 07:27:43,400 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-10 08:28:15] 2026-03-10 07:27:43,400 | INFO     | collected zombie processes
[2026-03-10 08:28:15] 2026-03-10 07:27:43,400 | INFO     | will attempt to kill all subprocesses of pid=1548511
[2026-03-10 08:28:15] 2026-03-10 07:27:43,442 | INFO     | process IDs to be killed: [1548511] (in reverse order)
[2026-03-10 08:28:15] 2026-03-10 07:27:43,473 | WARNING  | found no corresponding commands to process id(s)
[2026-03-10 08:28:15] 2026-03-10 07:27:43,473 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-10 08:28:15] 2026-03-10 07:27:43,475 | INFO     | did not find any defunct processes belonging to 1548511
[2026-03-10 08:28:15] 2026-03-10 07:27:43,476 | INFO     | did not find any defunct processes belonging to 1548511
[2026-03-10 08:28:15] 2026-03-10 07:27:43,476 | INFO     | ready for new job
[2026-03-10 08:28:15] 2026-03-10 07:27:43,476 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-10 08:28:15] 2026-03-10 07:27:43,477 | INFO     | **************************************
[2026-03-10 08:28:15] 2026-03-10 07:27:43,477 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-10 08:28:15] 2026-03-10 07:27:43,477 | INFO     | **************************************
[2026-03-10 08:28:15] 2026-03-10 07:27:43,477 | INFO     | 
[2026-03-10 08:28:15] 2026-03-10 07:27:43,477 | INFO     | architecture information:
[2026-03-10 08:28:15] 2026-03-10 07:27:43,477 | INFO     | executing command: cat /etc/os-release
[2026-03-10 08:28:15] 2026-03-10 07:27:43,490 | INFO     | cat /etc/os-release:
[2026-03-10 08:28:15] NAME="CentOS Linux"
[2026-03-10 08:28:15] VERSION="7 (Core)"
[2026-03-10 08:28:15] ID="centos"
[2026-03-10 08:28:15] ID_LIKE="rhel fedora"
[2026-03-10 08:28:15] VERSION_ID="7"
[2026-03-10 08:28:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-10 08:28:15] ANSI_COLOR="0;31"
[2026-03-10 08:28:15] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-10 08:28:15] HOME_URL="https://www.centos.org/"
[2026-03-10 08:28:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-10 08:28:15] 
[2026-03-10 08:28:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-10 08:28:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-10 08:28:15] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-10 08:28:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-10 08:28:15] 
[2026-03-10 08:28:15] 2026-03-10 07:27:43,491 | INFO     | **************************************
[2026-03-10 08:28:15] 2026-03-10 07:27:43,994 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-10 08:28:15] 2026-03-10 07:27:44,011 | INFO     | sufficient remaining disk space (227093250048 B)
[2026-03-10 08:28:15] 2026-03-10 07:27:44,012 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-10 08:28:15] 2026-03-10 07:27:44,012 | INFO     | current server update state: UPDATING_FINAL
[2026-03-10 08:28:15] 2026-03-10 07:27:44,012 | INFO     | update_server=False
[2026-03-10 08:28:15] 2026-03-10 07:27:44,012 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-10 08:28:15] 2026-03-10 07:27:44,012 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-10 08:28:15] 2026-03-10 07:27:44,012 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-10 08:28:15] 2026-03-10 07:27:44,012 | INFO     | aborting loop
[2026-03-10 08:28:15] 2026-03-10 07:27:44,354 | INFO     | all payload control threads have been joined
[2026-03-10 08:28:15] 2026-03-10 07:27:44,691 | INFO     | all data control threads have been joined
[2026-03-10 08:28:15] 2026-03-10 07:27:45,018 | INFO     | [job] retrieve thread has finished
[2026-03-10 08:28:15] 2026-03-10 07:27:45,018 | INFO     | [job] queue monitor thread has finished
[2026-03-10 08:28:15] 2026-03-10 07:27:45,018 | INFO     | [job] job monitor thread has finished
[2026-03-10 08:28:15] 2026-03-10 07:27:45,042 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-10 08:28:15] 2026-03-10 07:27:45,169 | INFO     | all job control threads have been joined
[2026-03-10 08:28:15] 2026-03-10 07:27:45,360 | INFO     | [payload] control thread has finished
[2026-03-10 08:28:15] 2026-03-10 07:27:45,379 | INFO     | [payload] validate_post thread has finished
[2026-03-10 08:28:15] 2026-03-10 07:27:45,577 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-10 08:28:15] 2026-03-10 07:27:45,680 | INFO     | [payload] failed_post thread has finished
[2026-03-10 08:28:15] 2026-03-10 07:27:45,697 | INFO     | [data] control thread has finished
[2026-03-10 08:28:15] 2026-03-10 07:27:45,949 | INFO     | [job] validate thread has finished
[2026-03-10 08:28:15] 2026-03-10 07:27:46,022 | INFO     | [job] create_data_payload thread has finished
[2026-03-10 08:28:15] 2026-03-10 07:27:46,137 | INFO     | [payload] validate_pre thread has finished
[2026-03-10 08:28:15] 2026-03-10 07:27:46,166 | INFO     | [data] copytool_in thread has finished
[2026-03-10 08:28:15] 2026-03-10 07:27:46,174 | INFO     | [job] control thread has finished
[2026-03-10 08:28:15] 2026-03-10 07:27:46,442 | INFO     | [payload] execute_payloads thread has finished
[2026-03-10 08:28:15] 2026-03-10 07:27:47,048 | INFO     | [data] copytool_out thread has finished
[2026-03-10 08:28:15] 2026-03-10 07:27:49,584 | INFO     | [data] queue_monitor thread has finished
[2026-03-10 08:28:15] 2026-03-10 07:27:54,639 | INFO     | job.realtimelogging is not enabled
[2026-03-10 08:28:15] 2026-03-10 07:27:55,645 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-10 08:28:15] 2026-03-10 07:28:03,956 | INFO     | [monitor] cgroup control has ended
[2026-03-10 08:28:15] 2026-03-10 07:28:04,361 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140404312971072)>', '<ExcThread(monitor, started 140403076491008)>']
[2026-03-10 08:28:15] 2026-03-10 07:28:09,387 | INFO     | all workflow threads have been joined
[2026-03-10 08:28:15] 2026-03-10 07:28:09,387 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-10 08:28:15] 2026-03-10 07:28:09,388 | INFO     | traces error code: 0
[2026-03-10 08:28:15] 2026-03-10 07:28:09,388 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-10 08:28:15] 2026-03-10 07:28:14,907 | INFO     | PID=1544009 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-10 08:28:15] 2026-03-10 07:28:14,908 | INFO     | found 0 job(s) in 20 queues
[2026-03-10 08:28:15] 2026-03-10 07:28:14,908 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-10 08:28:15] 2026-03-10 07:28:14,908 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-10 08:28:15] 2026-03-10 07:28:14,908 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-10 08:28:15] 2026-03-10 07:28:14,908 | INFO     | [monitor] control thread has ended
[2026-03-10 08:28:15] 2026-03-10 07:28:14,970 [wrapper] ==== pilot stdout END ====
[2026-03-10 08:28:15] 2026-03-10 07:28:14,974 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-10 08:28:15] 2026-03-10 07:28:14,978 [wrapper] pilotpid: 1544009
[2026-03-10 08:28:15] 2026-03-10 07:28:14,982 [wrapper] Pilot exit status: 0
[2026-03-10 08:28:15] 2026-03-10 07:28:14,992 [wrapper] pandaids: 7040863938
[2026-03-10 08:28:15] 2026-03-10 07:28:15,012 [wrapper] cleanup supervisor_pilot 1553668 1544010
[2026-03-10 08:28:15] 2026-03-10 07:28:15,015 [wrapper] Test setup, not cleaning
[2026-03-10 08:28:15] 2026-03-10 07:28:15,019 [wrapper] apfmon messages muted
[2026-03-10 08:28:15] 2026-03-10 07:28:15,023 [wrapper] ==== wrapper stdout END ====
[2026-03-10 08:28:15] 2026-03-10 07:28:15,027 [wrapper] ==== wrapper stderr END ====
[2026-03-10 08:28:15]  *** Error codes and diagnostics ***
[2026-03-10 08:28:15]     "exeErrorCode": 0,
[2026-03-10 08:28:15]     "exeErrorDiag": "",
[2026-03-10 08:28:15]     "pilotErrorCode": 0,
[2026-03-10 08:28:15]     "pilotErrorDiag": "",
[2026-03-10 08:28:15]  *** Listing of results directory ***
[2026-03-10 08:28:15] total 622464
[2026-03-10 08:28:15] -rw-r--r-- 1 boinc boinc    584627 Mar  9 15:53 pilot3.tar.gz
[2026-03-10 08:28:15] -rwx------ 1 boinc boinc     36322 Mar  9 15:54 runpilot2-wrapper.sh
[2026-03-10 08:28:15] -rw-r--r-- 1 boinc boinc      5111 Mar  9 15:55 queuedata.json
[2026-03-10 08:28:15] -rw-r--r-- 1 boinc boinc       100 Mar 10 07:20 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-10 08:28:15] -rwxr-xr-x 1 boinc boinc      7986 Mar 10 07:20 run_atlas
[2026-03-10 08:28:15] -rw-r--r-- 1 boinc boinc       105 Mar 10 07:20 job.xml
[2026-03-10 08:28:15] -rw-r--r-- 2 boinc boinc 444190151 Mar 10 07:20 EVNT.46701403._001367.pool.root.1
[2026-03-10 08:28:15] -rw-r--r-- 2 boinc boinc    597957 Mar 10 07:20 input.tar.gz
[2026-03-10 08:28:15] -rw-r--r-- 2 boinc boinc     15845 Mar 10 07:20 start_atlas.sh
[2026-03-10 08:28:15] drwxrwx--x 2 boinc boinc      4096 Mar 10 07:20 shared
[2026-03-10 08:28:15] -rw-r--r-- 1 boinc boinc         0 Mar 10 07:20 boinc_setup_complete
[2026-03-10 08:28:15] -rw-r--r-- 1 boinc boinc      6369 Mar 10 07:20 init_data.xml
[2026-03-10 08:28:15] -rw-r--r-- 1 boinc boinc         0 Mar 10 07:20 boinc_lockfile
[2026-03-10 08:28:15] -rw-r--r-- 1 boinc boinc      2563 Mar 10 07:20 pandaJob.out
[2026-03-10 08:28:15] -rw------- 1 boinc boinc   1005065 Mar 10 07:20 agis_schedconf.cvmfs.json
[2026-03-10 08:28:15] -rw------- 1 boinc boinc   1511578 Mar 10 07:20 agis_ddmendpoints.agis.ALL.json
[2026-03-10 08:28:15] -rw------- 1 boinc boinc       419 Mar 10 07:20 workernode_map.json
[2026-03-10 08:28:15] drwx------ 5 boinc boinc      4096 Mar 10 07:20 pilot3
[2026-03-10 08:28:15] -rw------- 1 boinc boinc 187555161 Mar 10 08:27 HITS.48955010._018375.pool.root.1
[2026-03-10 08:28:15] -rw-r--r-- 1 boinc boinc       530 Mar 10 08:27 boinc_task_state.xml
[2026-03-10 08:28:15] -rw------- 1 boinc boinc      1035 Mar 10 08:27 memory_monitor_summary.json
[2026-03-10 08:28:15] -rw------- 1 boinc boinc    272526 Mar 10 08:27 log.48955010._018375.job.log.tgz.1
[2026-03-10 08:28:15] -rw------- 1 boinc boinc      6309 Mar 10 08:27 heartbeat.json
[2026-03-10 08:28:15] -rw-r--r-- 1 boinc boinc      8192 Mar 10 08:28 boinc_mmap_file
[2026-03-10 08:28:15] -rw-r--r-- 1 boinc boinc        27 Mar 10 08:28 wrapper_checkpoint.txt
[2026-03-10 08:28:15] -rw------- 1 boinc boinc       747 Mar 10 08:28 pilotlog.txt
[2026-03-10 08:28:15] -rw------- 1 boinc boinc        95 Mar 10 08:28 pilot_heartbeat.json
[2026-03-10 08:28:15] -rw------- 1 boinc boinc    597481 Mar 10 08:28 log.48955010._018375.job.log.1
[2026-03-10 08:28:15] -rw------- 1 boinc boinc       357 Mar 10 08:28 output.list
[2026-03-10 08:28:15] -rw-r--r-- 1 boinc boinc       620 Mar 10 08:28 runtime_log
[2026-03-10 08:28:15] -rw------- 1 boinc boinc    890880 Mar 10 08:28 result.tar.gz
[2026-03-10 08:28:15] -rw-r--r-- 1 boinc boinc      8896 Mar 10 08:28 runtime_log.err
[2026-03-10 08:28:15] -rw------- 1 boinc boinc       657 Mar 10 08:28 NqVMDmzArJ9n9Rq4apOajLDm4fhM0noT9bVooX4SDmK8ZLDmbM1ezm.diag
[2026-03-10 08:28:15] -rw-r--r-- 1 boinc boinc     11629 Mar 10 08:28 stderr.txt
[2026-03-10 08:28:15] HITS file was successfully produced:
[2026-03-10 08:28:15] -rw------- 1 boinc boinc 187555161 Mar 10 08:27 shared/HITS.pool.root.1
[2026-03-10 08:28:15]  *** Contents of shared directory: ***
[2026-03-10 08:28:15] total 618416
[2026-03-10 08:28:15] -rw-r--r-- 2 boinc boinc 444190151 Mar 10 07:20 ATLAS.root_0
[2026-03-10 08:28:15] -rw-r--r-- 2 boinc boinc    597957 Mar 10 07:20 input.tar.gz
[2026-03-10 08:28:15] -rw-r--r-- 2 boinc boinc     15845 Mar 10 07:20 start_atlas.sh
[2026-03-10 08:28:15] -rw------- 1 boinc boinc 187555161 Mar 10 08:27 HITS.pool.root.1
[2026-03-10 08:28:15] -rw------- 1 boinc boinc    890880 Mar 10 08:28 result.tar.gz
08:28:16 (1539899): run_atlas exited; CPU time 14957.964417
08:28:16 (1539899): called boinc_finish(0)

</stderr_txt>
]]>

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