Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:00:26 (2537348): wrapper (7.7.26015): starting
07:00:26 (2537348): wrapper: running run_atlas (--nthreads 3)
[2026-03-10 07:00:26] Arguments: --nthreads 3
[2026-03-10 07:00:26] Threads: 3
[2026-03-10 07:00:26] Checking for CVMFS
[2026-03-10 07:00:26] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-10 07:00:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-10 07:00:49] Running cvmfs_config stat atlas.cern.ch
[2026-03-10 07:00:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-10 07:00:49] 2.9.2.0 34828 18235 90600 157104 2 50 25606387 36864000 0 130560 0 7047707 99.982 685844 12898 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-10 07:00:49] CVMFS is ok
[2026-03-10 07:00:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-10 07:00:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-10 07:00:49] Further information can be found at the LHC@home message board.
[2026-03-10 07:00:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-10 07:00:49] Checking for apptainer binary...
[2026-03-10 07:00:49] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-10 07:00:49] Running /usr/bin/apptainer --version
[2026-03-10 07:00:49] apptainer version 1.4.1-1.1
[2026-03-10 07:00:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-10 07:00:49] atlasA214
[2026-03-10 07:00:49] apptainer works
[2026-03-10 07:00:49] Set ATHENA_PROC_NUMBER=3
[2026-03-10 07:00:49] Set ATHENA_CORE_NUMBER=3
[2026-03-10 07:00:49] Starting ATLAS job with PandaID=7039677831
[2026-03-10 07:00:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-10 08:18:10]  *** The last 200 lines of the pilot log: ***
[2026-03-10 08:18:10] 
[2026-03-10 08:18:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-10 08:18:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-10 08:18:10] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-10 08:18:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-10 08:18:10] 
[2026-03-10 08:18:10] 2026-03-10 07:17:03,603 | INFO     | **************************************
[2026-03-10 08:18:10] 2026-03-10 07:17:04,105 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-10 08:18:10] 2026-03-10 07:17:04,109 | WARNING  | process 2545811 can no longer be monitored (due to stat problems) - aborting
[2026-03-10 08:18:10] 2026-03-10 07:17:04,116 | INFO     | sufficient remaining disk space (231946059776 B)
[2026-03-10 08:18:10] 2026-03-10 07:17:04,116 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-10 08:18:10] 2026-03-10 07:17:04,116 | INFO     | current server update state: UPDATING_FINAL
[2026-03-10 08:18:10] 2026-03-10 07:17:04,116 | INFO     | update_server=False
[2026-03-10 08:18:10] 2026-03-10 07:17:04,116 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-10 08:18:10] 2026-03-10 07:17:04,116 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-10 08:18:10] 2026-03-10 07:17:04,116 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-10 08:18:10] 2026-03-10 07:17:04,142 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-10 08:18:10] 2026-03-10 07:17:04,142 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-10 08:18:10] 2026-03-10 07:17:04,142 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-10 08:18:10] 2026-03-10 07:17:04,142 | WARNING  | maxPSS not found in memory monitor output
[2026-03-10 08:18:10] 2026-03-10 07:17:04,142 | INFO     | skipping file size check of payload stdout file (/local/data/boinc/slots/0/PanDA_Pilot-7039677831/payload.stdout) since it has not been created yet
[2026-03-10 08:18:10] 2026-03-10 07:17:04,142 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-10 08:18:10] 2026-03-10 07:17:04,152 | INFO     | sufficient remaining disk space (231946059776 B)
[2026-03-10 08:18:10] 2026-03-10 07:17:04,153 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-03-10 08:18:10] 2026-03-10 07:17:04,153 | INFO     | output file size check: skipping output file /local/data/boinc/slots/0/PanDA_Pilot-7039677831/HITS.48955006._024677.pool.root.1 since it does not exist
[2026-03-10 08:18:10] 2026-03-10 07:17:04,190 | INFO     | number of running child processes to parent process 2545811: 1
[2026-03-10 08:18:10] 2026-03-10 07:17:04,190 | INFO     | maximum number of monitored processes: 6
[2026-03-10 08:18:10] 2026-03-10 07:17:04,190 | INFO     | aborting job monitoring since job object (job id=7039677831) has expired
[2026-03-10 08:18:10] 2026-03-10 07:17:04,190 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-10 08:18:10] 2026-03-10 07:17:04,190 | INFO     | will abort loop
[2026-03-10 08:18:10] 2026-03-10 07:17:04,530 | INFO     | all data control threads have been joined
[2026-03-10 08:18:10] 2026-03-10 07:17:04,558 | INFO     | all payload control threads have been joined
[2026-03-10 08:18:10] 2026-03-10 07:17:05,071 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-10 08:18:10] 2026-03-10 07:17:05,122 | INFO     | [job] retrieve thread has finished
[2026-03-10 08:18:10] 2026-03-10 07:17:05,122 | INFO     | [job] queue monitor thread has finished
[2026-03-10 08:18:10] 2026-03-10 07:17:05,195 | INFO     | [job] job monitor thread has finished
[2026-03-10 08:18:10] 2026-03-10 07:17:05,234 | INFO     | all job control threads have been joined
[2026-03-10 08:18:10] 2026-03-10 07:17:05,536 | INFO     | [data] control thread has finished
[2026-03-10 08:18:10] 2026-03-10 07:17:05,561 | INFO     | [payload] control thread has finished
[2026-03-10 08:18:10] 2026-03-10 07:17:05,627 | INFO     | [payload] execute_payloads thread has finished
[2026-03-10 08:18:10] 2026-03-10 07:17:05,826 | INFO     | [job] validate thread has finished
[2026-03-10 08:18:10] 2026-03-10 07:17:05,883 | INFO     | [job] create_data_payload thread has finished
[2026-03-10 08:18:10] 2026-03-10 07:17:05,911 | INFO     | [payload] validate_pre thread has finished
[2026-03-10 08:18:10] 2026-03-10 07:17:06,041 | INFO     | [data] copytool_in thread has finished
[2026-03-10 08:18:10] 2026-03-10 07:17:06,076 | INFO     | [payload] failed_post thread has finished
[2026-03-10 08:18:10] 2026-03-10 07:17:06,240 | INFO     | [job] control thread has finished
[2026-03-10 08:18:10] 2026-03-10 07:17:06,459 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-10 08:18:10] 2026-03-10 07:17:06,610 | INFO     | [payload] validate_post thread has finished
[2026-03-10 08:18:10] 2026-03-10 07:17:07,077 | INFO     | [data] copytool_out thread has finished
[2026-03-10 08:18:10] 2026-03-10 07:17:08,123 | INFO     | [data] queue_monitor thread has finished
[2026-03-10 08:18:10] 2026-03-10 07:17:34,458 | INFO     | PID=2541388 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-10 08:18:10] 2026-03-10 07:17:34,458 | INFO     | found 0 job(s) in 20 queues
[2026-03-10 08:18:10] 2026-03-10 07:17:34,458 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-10 08:18:10] 2026-03-10 07:17:34,458 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-10 08:18:10] 2026-03-10 07:18:03,139 | INFO     | [monitor] cgroup control has ended
[2026-03-10 08:18:10] 2026-03-10 07:18:05,122 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139935381063488)>', '<ExcThread(monitor, started 139934505617152)>']
[2026-03-10 08:18:10] 2026-03-10 07:18:05,624 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-10 08:18:10] 2026-03-10 07:18:05,624 | INFO     | [monitor] control thread has ended
[2026-03-10 08:18:10] 2026-03-10 07:18:10,148 | INFO     | all workflow threads have been joined
[2026-03-10 08:18:10] 2026-03-10 07:18:10,148 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-10 08:18:10] 2026-03-10 07:18:10,148 | INFO     | traces error code: 0
[2026-03-10 08:18:10] 2026-03-10 07:18:10,149 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-10 08:18:10] 2026-03-10 07:18:10,199 [wrapper] ==== pilot stdout END ====
[2026-03-10 08:18:10] 2026-03-10 07:18:10,202 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-10 08:18:10] 2026-03-10 07:18:10,204 [wrapper] pilotpid: 2541388
[2026-03-10 08:18:10] 2026-03-10 07:18:10,206 [wrapper] Pilot exit status: 0
[2026-03-10 08:18:10] 2026-03-10 07:18:10,213 [wrapper] pandaids: 7039677831
[2026-03-10 08:18:10] 2026-03-10 07:18:10,229 [wrapper] cleanup supervisor_pilot 2551136 2541389
[2026-03-10 08:18:10] 2026-03-10 07:18:10,231 [wrapper] Test setup, not cleaning
[2026-03-10 08:18:10] 2026-03-10 07:18:10,234 [wrapper] apfmon messages muted
[2026-03-10 08:18:10] 2026-03-10 07:18:10,236 [wrapper] ==== wrapper stdout END ====
[2026-03-10 08:18:10] 2026-03-10 07:18:10,238 [wrapper] ==== wrapper stderr END ====
[2026-03-10 08:18:10]  *** Error codes and diagnostics ***
[2026-03-10 08:18:10]     "exeErrorCode": 0,
[2026-03-10 08:18:10]     "exeErrorDiag": "",
[2026-03-10 08:18:10]     "pilotErrorCode": 0,
[2026-03-10 08:18:10]     "pilotErrorDiag": "",
[2026-03-10 08:18:10]  *** Listing of results directory ***
[2026-03-10 08:18:10] total 618800
[2026-03-10 08:18:10] -rw-r--r-- 1 boinc boinc    584627 Mar  8 10:02 pilot3.tar.gz
[2026-03-10 08:18:10] -rwx------ 1 boinc boinc     36322 Mar  8 10:46 runpilot2-wrapper.sh
[2026-03-10 08:18:10] -rw-r--r-- 1 boinc boinc      5111 Mar  8 10:46 queuedata.json
[2026-03-10 08:18:10] -rw-r--r-- 1 boinc boinc       100 Mar 10 07:00 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-10 08:18:10] -rwxr-xr-x 1 boinc boinc      7986 Mar 10 07:00 run_atlas
[2026-03-10 08:18:10] -rw-r--r-- 1 boinc boinc       105 Mar 10 07:00 job.xml
[2026-03-10 08:18:10] -rw-r--r-- 2 boinc boinc 447523786 Mar 10 07:00 EVNT.46701403._000494.pool.root.1
[2026-03-10 08:18:10] -rw-r--r-- 2 boinc boinc    597958 Mar 10 07:00 input.tar.gz
[2026-03-10 08:18:10] -rw-r--r-- 2 boinc boinc     15845 Mar 10 07:00 start_atlas.sh
[2026-03-10 08:18:10] drwxrwx--x 2 boinc boinc      4096 Mar 10 07:00 shared
[2026-03-10 08:18:10] -rw-r--r-- 1 boinc boinc         0 Mar 10 07:00 boinc_setup_complete
[2026-03-10 08:18:10] -rw-r--r-- 1 boinc boinc      6441 Mar 10 07:00 init_data.xml
[2026-03-10 08:18:10] -rw-r--r-- 1 boinc boinc         0 Mar 10 07:00 boinc_lockfile
[2026-03-10 08:18:10] -rw-r--r-- 1 boinc boinc      2563 Mar 10 07:00 pandaJob.out
[2026-03-10 08:18:10] -rw------- 1 boinc boinc   1005073 Mar 10 07:00 agis_schedconf.cvmfs.json
[2026-03-10 08:18:10] -rw------- 1 boinc boinc   1511578 Mar 10 07:00 agis_ddmendpoints.agis.ALL.json
[2026-03-10 08:18:10] -rw------- 1 boinc boinc       429 Mar 10 07:00 workernode_map.json
[2026-03-10 08:18:10] drwx------ 5 boinc boinc      4096 Mar 10 07:00 pilot3
[2026-03-10 08:18:10] -rw------- 1 boinc boinc 180369922 Mar 10 08:16 HITS.48955006._024677.pool.root.1
[2026-03-10 08:18:10] -rw-r--r-- 1 boinc boinc       530 Mar 10 08:16 boinc_task_state.xml
[2026-03-10 08:18:10] -rw------- 1 boinc boinc      1017 Mar 10 08:16 memory_monitor_summary.json
[2026-03-10 08:18:10] -rw------- 1 boinc boinc    244533 Mar 10 08:16 log.48955006._024677.job.log.tgz.1
[2026-03-10 08:18:10] -rw------- 1 boinc boinc      6315 Mar 10 08:17 heartbeat.json
[2026-03-10 08:18:10] -rw------- 1 boinc boinc        95 Mar 10 08:17 pilot_heartbeat.json
[2026-03-10 08:18:10] -rw-r--r-- 1 boinc boinc        27 Mar 10 08:17 wrapper_checkpoint.txt
[2026-03-10 08:18:10] -rw-r--r-- 1 boinc boinc      8192 Mar 10 08:17 boinc_mmap_file
[2026-03-10 08:18:10] -rw------- 1 boinc boinc      6249 Mar 10 08:18 pilotlog.txt
[2026-03-10 08:18:10] -rw------- 1 boinc boinc    673485 Mar 10 08:18 log.48955006._024677.job.log.1
[2026-03-10 08:18:10] -rw------- 1 boinc boinc       357 Mar 10 08:18 output.list
[2026-03-10 08:18:10] -rw-r--r-- 1 boinc boinc       620 Mar 10 08:18 runtime_log
[2026-03-10 08:18:10] -rw------- 1 boinc boinc    931840 Mar 10 08:18 result.tar.gz
[2026-03-10 08:18:10] -rw-r--r-- 1 boinc boinc      8911 Mar 10 08:18 runtime_log.err
[2026-03-10 08:18:10] -rw------- 1 boinc boinc       660 Mar 10 08:18 1T4KDmAtPJ9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmAqYLDmRi0UNo.diag
[2026-03-10 08:18:10] -rw-r--r-- 1 boinc boinc     10023 Mar 10 08:18 stderr.txt
[2026-03-10 08:18:10] HITS file was successfully produced:
[2026-03-10 08:18:10] -rw------- 1 boinc boinc 180369922 Mar 10 08:16 shared/HITS.pool.root.1
[2026-03-10 08:18:10]  *** Contents of shared directory: ***
[2026-03-10 08:18:10] total 614700
[2026-03-10 08:18:10] -rw-r--r-- 2 boinc boinc 447523786 Mar 10 07:00 ATLAS.root_0
[2026-03-10 08:18:10] -rw-r--r-- 2 boinc boinc    597958 Mar 10 07:00 input.tar.gz
[2026-03-10 08:18:10] -rw-r--r-- 2 boinc boinc     15845 Mar 10 07:00 start_atlas.sh
[2026-03-10 08:18:10] -rw------- 1 boinc boinc 180369922 Mar 10 08:16 HITS.pool.root.1
[2026-03-10 08:18:10] -rw------- 1 boinc boinc    931840 Mar 10 08:18 result.tar.gz
08:18:11 (2537348): run_atlas exited; CPU time 13056.108912
08:18:11 (2537348): called boinc_finish(0)

</stderr_txt>
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