Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:05:39 (9420): wrapper (7.7.26015): starting
03:05:39 (9420): wrapper: running run_atlas (--nthreads 8)
[2026-03-10 03:05:39] Arguments: --nthreads 8
[2026-03-10 03:05:39] Threads: 8
[2026-03-10 03:05:39] Checking for CVMFS
[2026-03-10 03:05:39] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-10 03:05:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-10 03:05:42] Running cvmfs_config stat atlas.cern.ch
[2026-03-10 03:05:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-10 03:05:44] 2.11.2.0 11585 121191 134476 157097 0 54 12657011 25165825 4834 130560 153 39782261 99.838 27818880 995 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-10 03:05:44] CVMFS is ok
[2026-03-10 03:05:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-10 03:05:44] Checking for apptainer binary...
[2026-03-10 03:05:44] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-10 03:05:44] Running /usr/bin/apptainer --version
[2026-03-10 03:05:44] apptainer version 1.3.2-1.el7
[2026-03-10 03:05:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-10 03:05:53] cg-vwn455.simple-grid.lan
[2026-03-10 03:05:53] apptainer works
[2026-03-10 03:05:53] Set ATHENA_PROC_NUMBER=8
[2026-03-10 03:05:53] Set ATHENA_CORE_NUMBER=8
[2026-03-10 03:05:53] Starting ATLAS job with PandaID=7039963651
[2026-03-10 03:05:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-10 07:32:41]  *** The last 200 lines of the pilot log: ***
[2026-03-10 07:32:41] 2026-03-10 06:31:34,032 | INFO     | preparing for final server update for job 7039963651 in state='finished'
[2026-03-10 07:32:41] 2026-03-10 06:31:34,209 | INFO     | time since job start (15630s) is within the limit (349056.0s)
[2026-03-10 07:32:41] 2026-03-10 06:31:34,755 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-03-10 07:32:41] 2026-03-10 06:31:34,755 | INFO     | reading metadata from: /var/lib/boinc/slots/8/PanDA_Pilot-7039963651/jobReport.json
[2026-03-10 07:32:41] 2026-03-10 06:31:34,758 | INFO     | added worker_node to metadata from /var/lib/boinc/slots/8/workernode_map.json
[2026-03-10 07:32:41] 2026-03-10 06:31:34,758 | INFO     | this job has now completed (state=finished)
[2026-03-10 07:32:41] 2026-03-10 06:31:34,758 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-10 07:32:41] 2026-03-10 06:31:34,758 | INFO     | log transfer has been attempted: DONE
[2026-03-10 07:32:41] 2026-03-10 06:31:34,758 | INFO     | job 7039963651 has finished - writing final server update
[2026-03-10 07:32:41] 2026-03-10 06:31:34,759 | INFO     | total number of processed events: 400 (read)
[2026-03-10 07:32:41] 2026-03-10 06:31:34,761 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-7039963651/memory_monitor_summary.json (trf name=prmon)
[2026-03-10 07:32:41] 2026-03-10 06:31:34,761 | INFO     | extracted standard info from prmon json
[2026-03-10 07:32:41] 2026-03-10 06:31:34,762 | INFO     | extracted standard memory fields from prmon json
[2026-03-10 07:32:41] 2026-03-10 06:31:34,762 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-10 07:32:41] 2026-03-10 06:31:34,762 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-10 07:32:41] 2026-03-10 06:31:34,762 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-10 07:32:41] 2026-03-10 06:31:34,771 | INFO     | fitting pss+swap vs Time
[2026-03-10 07:32:41] 2026-03-10 06:31:34,772 | INFO     | sum of square deviations: 4962187923.0
[2026-03-10 07:32:41] 2026-03-10 06:31:34,774 | INFO     | sum of deviations: 13189314012.500057
[2026-03-10 07:32:41] 2026-03-10 06:31:34,774 | INFO     | mean x: 1773116565.5
[2026-03-10 07:32:41] 2026-03-10 06:31:34,775 | INFO     | mean y: 2524264.2817460317
[2026-03-10 07:32:41] 2026-03-10 06:31:34,775 | INFO     | intersect: -4710354716.933155
[2026-03-10 07:32:41] 2026-03-10 06:31:34,775 | INFO     | chi2: 5.282409916423718
[2026-03-10 07:32:41] 2026-03-10 06:31:34,776 | INFO     | sum of square deviations: 4672638308.0
[2026-03-10 07:32:41] 2026-03-10 06:31:34,778 | INFO     | sum of deviations: 30932459743.99999
[2026-03-10 07:32:41] 2026-03-10 06:31:34,778 | INFO     | mean x: 1773116413.0
[2026-03-10 07:32:41] 2026-03-10 06:31:34,778 | INFO     | mean y: 2533458.854251012
[2026-03-10 07:32:41] 2026-03-10 06:31:34,778 | INFO     | intersect: -11735343186.26188
[2026-03-10 07:32:41] 2026-03-10 06:31:34,778 | INFO     | chi2: 4.4712570107498255
[2026-03-10 07:32:41] 2026-03-10 06:31:34,778 | INFO     | current chi2=4.4712570107498255 (change=15.35573570600626 %)
[2026-03-10 07:32:41] 2026-03-10 06:31:34,779 | INFO     | right removable region: 246
[2026-03-10 07:32:41] 2026-03-10 06:31:34,779 | INFO     | sum of square deviations: 4672638308.0
[2026-03-10 07:32:41] 2026-03-10 06:31:34,781 | INFO     | sum of deviations: -70134985459.99994
[2026-03-10 07:32:41] 2026-03-10 06:31:34,781 | INFO     | mean x: 1773116718.0
[2026-03-10 07:32:41] 2026-03-10 06:31:34,781 | INFO     | mean y: 2568079.5020242915
[2026-03-10 07:32:41] 2026-03-10 06:31:34,781 | INFO     | intersect: 26616550810.17924
[2026-03-10 07:32:41] 2026-03-10 06:31:34,781 | INFO     | chi2: 1.2352288894462233
[2026-03-10 07:32:41] 2026-03-10 06:31:34,781 | INFO     | current chi2=1.2352288894462233 (change=76.61618638103545 %)
[2026-03-10 07:32:41] 2026-03-10 06:31:34,782 | INFO     | sum of square deviations: 4394577280.5
[2026-03-10 07:32:41] 2026-03-10 06:31:34,784 | INFO     | sum of deviations: -81742800967.50002
[2026-03-10 07:32:41] 2026-03-10 06:31:34,784 | INFO     | mean x: 1773116870.5
[2026-03-10 07:32:41] 2026-03-10 06:31:34,784 | INFO     | mean y: 2574407.252066116
[2026-03-10 07:32:41] 2026-03-10 06:31:34,784 | INFO     | intersect: 32984026361.808952
[2026-03-10 07:32:41] 2026-03-10 06:31:34,784 | INFO     | chi2: 1.0924229811439194
[2026-03-10 07:32:41] 2026-03-10 06:31:34,784 | INFO     | current chi2=1.0924229811439194 (change=11.561088760345177 %)
[2026-03-10 07:32:41] 2026-03-10 06:31:34,784 | INFO     | left removable region: 20
[2026-03-10 07:32:41] 2026-03-10 06:31:34,785 | INFO     | sum of square deviations: 3579276412.5
[2026-03-10 07:32:41] 2026-03-10 06:31:34,786 | INFO     | sum of deviations: -50484700287.499985
[2026-03-10 07:32:41] 2026-03-10 06:31:34,786 | INFO     | mean x: 1773116992.5
[2026-03-10 07:32:41] 2026-03-10 06:31:34,786 | INFO     | mean y: 2577803.8982300884
[2026-03-10 07:32:41] 2026-03-10 06:31:34,786 | INFO     | intersect: 25011900813.548817
[2026-03-10 07:32:41] 2026-03-10 06:31:34,787 | INFO     | chi2: 0.21021858631303475
[2026-03-10 07:32:41] 2026-03-10 06:31:34,787 | INFO     | current memory leak: -14.10 B/s (using 226 data points, chi2=0.21)
[2026-03-10 07:32:41] 2026-03-10 06:31:34,787 | INFO     | could have reported an average CPU frequency of 2250 MHz (12 samples)
[2026-03-10 07:32:41] 2026-03-10 06:31:34,788 | INFO     | ..............................
[2026-03-10 07:32:41] 2026-03-10 06:31:34,788 | INFO     | . Timing measurements:
[2026-03-10 07:32:41] 2026-03-10 06:31:34,788 | INFO     | . get job = 0 s
[2026-03-10 07:32:41] 2026-03-10 06:31:34,788 | INFO     | . initial setup = 102 s
[2026-03-10 07:32:41] 2026-03-10 06:31:34,788 | INFO     | . payload setup = 116 s
[2026-03-10 07:32:41] 2026-03-10 06:31:34,788 | INFO     | . stage-in = 0 s
[2026-03-10 07:32:41] 2026-03-10 06:31:34,788 | INFO     | . payload execution = 15488 s
[2026-03-10 07:32:41] 2026-03-10 06:31:34,788 | INFO     | . stage-out = 3 s
[2026-03-10 07:32:41] 2026-03-10 06:31:34,788 | INFO     | . log creation = 1 s
[2026-03-10 07:32:41] 2026-03-10 06:31:34,788 | INFO     | ..............................
[2026-03-10 07:32:41] 2026-03-10 06:31:34,891 | INFO     | 
[2026-03-10 07:32:41] 2026-03-10 06:31:34,891 | INFO     | job summary report
[2026-03-10 07:32:41] 2026-03-10 06:31:34,892 | INFO     | --------------------------------------------------
[2026-03-10 07:32:41] 2026-03-10 06:31:34,892 | INFO     | PanDA job id: 7039963651
[2026-03-10 07:32:41] 2026-03-10 06:31:34,892 | INFO     | task id: 48838586
[2026-03-10 07:32:41] 2026-03-10 06:31:34,892 | INFO     | errors: (none)
[2026-03-10 07:32:41] 2026-03-10 06:31:34,892 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-10 07:32:41] 2026-03-10 06:31:34,892 | INFO     | pilot state: finished 
[2026-03-10 07:32:41] 2026-03-10 06:31:34,892 | INFO     | transexitcode: 0
[2026-03-10 07:32:41] 2026-03-10 06:31:34,892 | INFO     | exeerrorcode: 0
[2026-03-10 07:32:41] 2026-03-10 06:31:34,892 | INFO     | exeerrordiag: 
[2026-03-10 07:32:41] 2026-03-10 06:31:34,892 | INFO     | exitcode: 0
[2026-03-10 07:32:41] 2026-03-10 06:31:34,892 | INFO     | exitmsg: OK
[2026-03-10 07:32:41] 2026-03-10 06:31:34,893 | INFO     | cpuconsumptiontime: 60268 s
[2026-03-10 07:32:41] 2026-03-10 06:31:34,893 | INFO     | nevents: 400
[2026-03-10 07:32:41] 2026-03-10 06:31:34,893 | INFO     | neventsw: 0
[2026-03-10 07:32:41] 2026-03-10 06:31:34,893 | INFO     | pid: 18105
[2026-03-10 07:32:41] 2026-03-10 06:31:34,893 | INFO     | pgrp: 18105
[2026-03-10 07:32:41] 2026-03-10 06:31:34,893 | INFO     | corecount: 8
[2026-03-10 07:32:41] 2026-03-10 06:31:34,893 | INFO     | event service: False
[2026-03-10 07:32:41] 2026-03-10 06:31:34,893 | INFO     | sizes: {0: 2279646, 1: 2280103, 2: 2280163, 12: 2280191, 15609: 2311412, 15612: 2320410, 15615: 2320594, 15618: 2320788}
[2026-03-10 07:32:41] 2026-03-10 06:31:34,893 | INFO     | --------------------------------------------------
[2026-03-10 07:32:41] 2026-03-10 06:31:34,893 | INFO     | 
[2026-03-10 07:32:41] 2026-03-10 06:31:34,893 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2026-03-10 07:32:41] 2026-03-10 06:31:35,409 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-10 07:32:41] 2026-03-10 06:31:35,409 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-10 07:32:41] 2026-03-10 06:31:35,409 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-10 07:32:41] 2026-03-10 06:31:35,409 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-10 07:32:41] 2026-03-10 06:31:35,409 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-10 07:32:41] 2026-03-10 06:31:35,410 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-10 07:32:41] 2026-03-10 06:31:35,410 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-10 07:32:41] 2026-03-10 06:31:35,410 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-10 07:32:41] 2026-03-10 06:31:35,410 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-10 07:32:41] 2026-03-10 06:31:35,410 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-10 07:32:41] 2026-03-10 06:31:35,410 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-10 07:32:41] 2026-03-10 06:31:35,410 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-10 07:32:41] 2026-03-10 06:31:35,410 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-10 07:32:41] 2026-03-10 06:31:35,410 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-10 07:32:41] 2026-03-10 06:31:35,411 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-10 07:32:41] 2026-03-10 06:31:35,411 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-10 07:32:41] 2026-03-10 06:31:35,411 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-10 07:32:41] 2026-03-10 06:31:35,411 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-10 07:32:41] 2026-03-10 06:31:35,411 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-10 07:32:41] 2026-03-10 06:31:35,411 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-10 07:32:41] 2026-03-10 06:31:35,411 | INFO     | job 7039963651 has completed (purged errors)
[2026-03-10 07:32:41] 2026-03-10 06:31:35,411 | INFO     | overall cleanup function is called
[2026-03-10 07:32:41] 2026-03-10 06:31:36,420 | INFO     | --- collectZombieJob: --- 10, [18105]
[2026-03-10 07:32:41] 2026-03-10 06:31:36,421 | INFO     | zombie collector waiting for pid 18105
[2026-03-10 07:32:41] 2026-03-10 06:31:36,421 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-10 07:32:41] 2026-03-10 06:31:36,421 | INFO     | collected zombie processes
[2026-03-10 07:32:41] 2026-03-10 06:31:36,421 | INFO     | will attempt to kill all subprocesses of pid=18105
[2026-03-10 07:32:41] 2026-03-10 06:31:36,558 | INFO     | process IDs to be killed: [18105] (in reverse order)
[2026-03-10 07:32:41] 2026-03-10 06:31:37,394 | WARNING  | found no corresponding commands to process id(s)
[2026-03-10 07:32:41] 2026-03-10 06:31:37,394 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-10 07:32:41] 2026-03-10 06:31:37,397 | INFO     | did not find any defunct processes belonging to 18105
[2026-03-10 07:32:41] 2026-03-10 06:31:37,412 | INFO     | did not find any defunct processes belonging to 18105
[2026-03-10 07:32:41] 2026-03-10 06:31:37,412 | INFO     | ready for new job
[2026-03-10 07:32:41] 2026-03-10 06:31:37,413 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-10 07:32:41] 2026-03-10 06:31:37,414 | INFO     | **************************************
[2026-03-10 07:32:41] 2026-03-10 06:31:37,415 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-10 07:32:41] 2026-03-10 06:31:37,415 | INFO     | **************************************
[2026-03-10 07:32:41] 2026-03-10 06:31:37,415 | INFO     | 
[2026-03-10 07:32:41] 2026-03-10 06:31:37,415 | INFO     | pilot is running in a VM
[2026-03-10 07:32:41] 2026-03-10 06:31:37,415 | INFO     | architecture information:
[2026-03-10 07:32:41] 2026-03-10 06:31:37,423 | INFO     | executing command: cat /etc/os-release
[2026-03-10 07:32:41] 2026-03-10 06:31:37,689 | INFO     | cat /etc/os-release:
[2026-03-10 07:32:41] NAME="CentOS Linux"
[2026-03-10 07:32:41] VERSION="7 (Core)"
[2026-03-10 07:32:41] ID="centos"
[2026-03-10 07:32:41] ID_LIKE="rhel fedora"
[2026-03-10 07:32:41] VERSION_ID="7"
[2026-03-10 07:32:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-10 07:32:41] ANSI_COLOR="0;31"
[2026-03-10 07:32:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-10 07:32:41] HOME_URL="https://www.centos.org/"
[2026-03-10 07:32:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-10 07:32:41] 
[2026-03-10 07:32:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-10 07:32:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-10 07:32:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-10 07:32:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-10 07:32:41] 
[2026-03-10 07:32:41] 2026-03-10 06:31:37,689 | INFO     | **************************************
[2026-03-10 07:32:41] 2026-03-10 06:31:38,192 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2026-03-10 07:32:41] 2026-03-10 06:31:38,410 | INFO     | sufficient remaining disk space (495701721088 B)
[2026-03-10 07:32:41] 2026-03-10 06:31:38,410 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-10 07:32:41] 2026-03-10 06:31:38,410 | INFO     | current server update state: UPDATING_FINAL
[2026-03-10 07:32:41] 2026-03-10 06:31:38,410 | INFO     | update_server=False
[2026-03-10 07:32:41] 2026-03-10 06:31:38,411 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-10 07:32:41] 2026-03-10 06:31:38,718 | INFO     | all payload control threads have been joined
[2026-03-10 07:32:41] 2026-03-10 06:31:39,157 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-10 07:32:41] 2026-03-10 06:31:39,158 | INFO     | aborting loop
[2026-03-10 07:32:41] 2026-03-10 06:31:39,416 | INFO     | [job] retrieve thread has finished
[2026-03-10 07:32:41] 2026-03-10 06:31:39,451 | INFO     | all data control threads have been joined
[2026-03-10 07:32:41] 2026-03-10 06:31:39,477 | INFO     | [job] validate thread has finished
[2026-03-10 07:32:41] 2026-03-10 06:31:39,558 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-10 07:32:41] 2026-03-10 06:31:39,724 | INFO     | [payload] control thread has finished
[2026-03-10 07:32:41] 2026-03-10 06:31:39,761 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-10 07:32:41] 2026-03-10 06:31:39,780 | INFO     | [payload] failed_post thread has finished
[2026-03-10 07:32:41] 2026-03-10 06:31:39,809 | INFO     | [payload] validate_pre thread has finished
[2026-03-10 07:32:41] 2026-03-10 06:31:39,810 | INFO     | [data] copytool_in thread has finished
[2026-03-10 07:32:41] 2026-03-10 06:31:39,893 | INFO     | [payload] execute_payloads thread has finished
[2026-03-10 07:32:41] 2026-03-10 06:31:39,905 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-10 07:32:41] 2026-03-10 06:31:39,975 | INFO     | all job control threads have been joined
[2026-03-10 07:32:41] 2026-03-10 06:31:40,163 | INFO     | [job] job monitor thread has finished
[2026-03-10 07:32:41] 2026-03-10 06:31:40,457 | INFO     | [data] control thread has finished
[2026-03-10 07:32:41] 2026-03-10 06:31:40,661 | INFO     | [job] create_data_payload thread has finished
[2026-03-10 07:32:41] 2026-03-10 06:31:40,911 | INFO     | [job] queue monitor thread has finished
[2026-03-10 07:32:41] 2026-03-10 06:31:40,926 | INFO     | [payload] validate_post thread has finished
[2026-03-10 07:32:41] 2026-03-10 06:31:40,981 | INFO     | [job] control thread has finished
[2026-03-10 07:32:41] 2026-03-10 06:31:41,565 | INFO     | [data] copytool_out thread has finished
[2026-03-10 07:32:41] 2026-03-10 06:31:41,885 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-10 07:32:41] 2026-03-10 06:31:45,894 | INFO     | [data] queue_monitor thread has finished
[2026-03-10 07:32:41] 2026-03-10 06:32:07,392 | INFO     | PID=13566 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-10 07:32:41] 2026-03-10 06:32:07,392 | INFO     | .. there are 9 such processes running
[2026-03-10 07:32:41] 2026-03-10 06:32:07,392 | INFO     | found 0 job(s) in 20 queues
[2026-03-10 07:32:41] 2026-03-10 06:32:07,392 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-10 07:32:41] 2026-03-10 06:32:07,393 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-10 07:32:41] 2026-03-10 06:32:30,838 | INFO     | [monitor] cgroup control has ended
[2026-03-10 07:32:41] 2026-03-10 06:32:32,599 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140553615554368)>', '<ExcThread(monitor, started 140553157056256)>']
[2026-03-10 07:32:41] 2026-03-10 06:32:33,546 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-10 07:32:41] 2026-03-10 06:32:33,547 | INFO     | [monitor] control thread has ended
[2026-03-10 07:32:41] 2026-03-10 06:32:37,624 | INFO     | all workflow threads have been joined
[2026-03-10 07:32:41] 2026-03-10 06:32:37,625 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-10 07:32:41] 2026-03-10 06:32:37,625 | INFO     | traces error code: 0
[2026-03-10 07:32:41] 2026-03-10 06:32:37,625 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-10 07:32:41] 2026-03-10 06:32:37,850 [wrapper] ==== pilot stdout END ====
[2026-03-10 07:32:41] 2026-03-10 06:32:37,874 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-10 07:32:41] 2026-03-10 06:32:37,902 [wrapper] pilotpid: 13566
[2026-03-10 07:32:41] 2026-03-10 06:32:37,956 [wrapper] Pilot exit status: 0
[2026-03-10 07:32:41] 2026-03-10 06:32:38,320 [wrapper] pandaids: 7039963651
[2026-03-10 07:32:41] 2026-03-10 06:32:39,303 [wrapper] cleanup supervisor_pilot 26485 13567
[2026-03-10 07:32:41] 2026-03-10 06:32:39,370 [wrapper] Test setup, not cleaning
[2026-03-10 07:32:41] 2026-03-10 06:32:39,494 [wrapper] apfmon messages muted
[2026-03-10 07:32:41] 2026-03-10 06:32:39,581 [wrapper] ==== wrapper stdout END ====
[2026-03-10 07:32:41] 2026-03-10 06:32:39,634 [wrapper] ==== wrapper stderr END ====
[2026-03-10 07:32:41]  *** Error codes and diagnostics ***
[2026-03-10 07:32:41]     "exeErrorCode": 0,
[2026-03-10 07:32:41]     "exeErrorDiag": "",
[2026-03-10 07:32:41]     "pilotErrorCode": 0,
[2026-03-10 07:32:41]     "pilotErrorDiag": "",
[2026-03-10 07:32:41]  *** Listing of results directory ***
[2026-03-10 07:32:41] total 487796
[2026-03-10 07:32:41] -rw-r--r--. 1 boinc boinc      5111 Mar  4 13:56 queuedata.json
[2026-03-10 07:32:41] -rw-r--r--. 1 boinc boinc    584627 Mar  4 13:56 pilot3.tar.gz
[2026-03-10 07:32:41] -rwx------. 1 boinc boinc     36322 Mar  4 13:57 runpilot2-wrapper.sh
[2026-03-10 07:32:41] -rw-r--r--. 1 boinc boinc       100 Mar 10 03:05 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-10 07:32:41] -rwxr-xr-x. 1 boinc boinc      7986 Mar 10 03:05 run_atlas
[2026-03-10 07:32:41] -rw-r--r--. 1 boinc boinc       105 Mar 10 03:05 job.xml
[2026-03-10 07:32:41] -rw-r--r--. 1 boinc boinc      6391 Mar 10 03:05 init_data.xml
[2026-03-10 07:32:41] -rw-r--r--. 2 boinc boinc 277388512 Mar 10 03:05 EVNT.48220221._000124.pool.root.1
[2026-03-10 07:32:41] -rw-r--r--. 2 boinc boinc     15845 Mar 10 03:05 start_atlas.sh
[2026-03-10 07:32:41] drwxrwx--x. 2 boinc boinc        68 Mar 10 03:05 shared
[2026-03-10 07:32:41] -rw-r--r--. 2 boinc boinc    597970 Mar 10 03:05 input.tar.gz
[2026-03-10 07:32:41] -rw-r--r--. 1 boinc boinc         0 Mar 10 03:05 boinc_lockfile
[2026-03-10 07:32:41] -rw-r--r--. 1 boinc boinc      2562 Mar 10 03:05 pandaJob.out
[2026-03-10 07:32:41] -rw-------. 1 boinc boinc       413 Mar 10 03:10 workernode_map.json
[2026-03-10 07:32:41] -rw-------. 1 boinc boinc   1002338 Mar 10 03:11 agis_schedconf.cvmfs.json
[2026-03-10 07:32:41] drwx------. 5 boinc boinc      4096 Mar 10 03:11 pilot3
[2026-03-10 07:32:41] -rw-------. 1 boinc boinc 212867300 Mar 10 07:30 HITS.48838586._005665.pool.root.1
[2026-03-10 07:32:41] -rw-r--r--. 1 boinc boinc       530 Mar 10 07:30 boinc_task_state.xml
[2026-03-10 07:32:41] -rw-------. 1 boinc boinc        95 Mar 10 07:31 pilot_heartbeat.json
[2026-03-10 07:32:41] -rw-------. 1 boinc boinc      1012 Mar 10 07:31 memory_monitor_summary.json
[2026-03-10 07:32:41] -rw-------. 1 boinc boinc   1511578 Mar 10 07:31 agis_ddmendpoints.agis.ALL.json
[2026-03-10 07:32:41] -rw-------. 1 boinc boinc    490114 Mar 10 07:31 log.48838586._005665.job.log.tgz.1
[2026-03-10 07:32:41] -rw-------. 1 boinc boinc      6316 Mar 10 07:31 heartbeat.json
[2026-03-10 07:32:41] -rw-r--r--. 1 boinc boinc        28 Mar 10 07:32 wrapper_checkpoint.txt
[2026-03-10 07:32:41] -rw-r--r--. 1 boinc boinc      8192 Mar 10 07:32 boinc_mmap_file
[2026-03-10 07:32:41] -rw-------. 1 boinc boinc      4880 Mar 10 07:32 pilotlog.txt
[2026-03-10 07:32:41] -rw-------. 1 boinc boinc   2178795 Mar 10 07:32 log.48838586._005665.job.log.1
[2026-03-10 07:32:41] -rw-------. 1 boinc boinc       357 Mar 10 07:32 output.list
[2026-03-10 07:32:41] -rw-r--r--. 1 boinc boinc       620 Mar 10 07:32 runtime_log
[2026-03-10 07:32:41] -rw-------. 1 boinc boinc   2682880 Mar 10 07:32 result.tar.gz
[2026-03-10 07:32:41] -rw-r--r--. 1 boinc boinc      8816 Mar 10 07:32 runtime_log.err
[2026-03-10 07:32:41] -rw-------. 1 boinc boinc       656 Mar 10 07:32 IVgNDmHy0H9n9Rq4apOajLDm4fhM0noT9bVooX4SDmMUILDmJBaePo.diag
[2026-03-10 07:32:41] -rw-r--r--. 1 boinc boinc     20960 Mar 10 07:32 stderr.txt
[2026-03-10 07:32:41] HITS file was successfully produced:
[2026-03-10 07:32:41] -rw-------. 1 boinc boinc 212867300 Mar 10 07:30 shared/HITS.pool.root.1
[2026-03-10 07:32:41]  *** Contents of shared directory: ***
[2026-03-10 07:32:41] total 481988
[2026-03-10 07:32:41] -rw-r--r--. 2 boinc boinc 277388512 Mar 10 03:05 ATLAS.root_0
[2026-03-10 07:32:41] -rw-r--r--. 2 boinc boinc     15845 Mar 10 03:05 start_atlas.sh
[2026-03-10 07:32:41] -rw-r--r--. 2 boinc boinc    597970 Mar 10 03:05 input.tar.gz
[2026-03-10 07:32:41] -rw-------. 1 boinc boinc 212867300 Mar 10 07:30 HITS.pool.root.1
[2026-03-10 07:32:41] -rw-------. 1 boinc boinc   2682880 Mar 10 07:32 result.tar.gz
07:32:42 (9420): run_atlas exited; CPU time 60475.834706
07:32:42 (9420): called boinc_finish(0)

</stderr_txt>
]]>

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