Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
14:36:36 (3299106): wrapper (7.7.26015): starting
14:36:36 (3299106): wrapper: running run_atlas (--nthreads 4)
[2026-03-09 14:36:36] Arguments: --nthreads 4
[2026-03-09 14:36:36] Threads: 4
[2026-03-09 14:36:36] Checking for CVMFS
[2026-03-09 14:36:37] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-09 14:36:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-09 14:36:39] Running cvmfs_config stat atlas.cern.ch
[2026-03-09 14:36:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-09 14:36:39] 2.13.3.0 1437033 4832 52820 157086 2 49 3279862 4096001 2748 130560 0 3642182 99.991 170036 1049 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2026-03-09 14:36:39] CVMFS is ok
[2026-03-09 14:36:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-09 14:36:39] Small home clusters do not require a local http proxy but it is suggested if
[2026-03-09 14:36:39] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-03-09 14:36:39] Further information can be found at the LHC@home message board.
[2026-03-09 14:36:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-09 14:36:39] Checking for apptainer binary...
[2026-03-09 14:36:39] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-09 14:36:39] Running /usr/bin/apptainer --version
[2026-03-09 14:36:39] apptainer version 1.4.5
[2026-03-09 14:36:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-09 14:36:39] T5810-Ubuntu
[2026-03-09 14:36:39] apptainer works
[2026-03-09 14:36:39] Set ATHENA_PROC_NUMBER=4
[2026-03-09 14:36:39] Set ATHENA_CORE_NUMBER=4
[2026-03-09 14:36:39] Starting ATLAS job with PandaID=7036032359
[2026-03-09 14:36:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/whitlerd/Desktop/BOINC/slots/22 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-09 18:42:32]  *** The last 200 lines of the pilot log: ***
[2026-03-09 18:42:32] 2026-03-09 22:41:58,130 | INFO     | job 7036032359 has finished - writing final server update
[2026-03-09 18:42:32] 2026-03-09 22:41:58,130 | INFO     | total number of processed events: 400 (read)
[2026-03-09 18:42:32] 2026-03-09 22:41:58,140 | INFO     | using path: /home/whitlerd/Desktop/BOINC/slots/22/PanDA_Pilot-7036032359/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 18:42:32] 2026-03-09 22:41:58,141 | INFO     | extracted standard info from prmon json
[2026-03-09 18:42:32] 2026-03-09 22:41:58,141 | INFO     | extracted standard memory fields from prmon json
[2026-03-09 18:42:32] 2026-03-09 22:41:58,141 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-09 18:42:32] 2026-03-09 22:41:58,142 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-09 18:42:32] 2026-03-09 22:41:58,142 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-09 18:42:32] 2026-03-09 22:41:58,147 | INFO     | fitting pss+swap vs Time
[2026-03-09 18:42:32] 2026-03-09 22:41:58,148 | INFO     | sum of square deviations: 4340323240.0
[2026-03-09 18:42:32] 2026-03-09 22:41:58,150 | INFO     | sum of deviations: -55194106864.000015
[2026-03-09 18:42:32] 2026-03-09 22:41:58,150 | INFO     | mean x: 1773088765.0
[2026-03-09 18:42:32] 2026-03-09 22:41:58,150 | INFO     | mean y: 2365606.7800829876
[2026-03-09 18:42:32] 2026-03-09 22:41:58,150 | INFO     | intersect: 22550006730.10983
[2026-03-09 18:42:32] 2026-03-09 22:41:58,151 | INFO     | chi2: 2.506262208086084
[2026-03-09 18:42:32] 2026-03-09 22:41:58,151 | INFO     | sum of square deviations: 4075741535.0
[2026-03-09 18:42:32] 2026-03-09 22:41:58,153 | INFO     | sum of deviations: -39102207983.000015
[2026-03-09 18:42:32] 2026-03-09 22:41:58,154 | INFO     | mean x: 1773088612.5
[2026-03-09 18:42:32] 2026-03-09 22:41:58,154 | INFO     | mean y: 2374738.1101694917
[2026-03-09 18:42:32] 2026-03-09 22:41:58,154 | INFO     | intersect: 17013188378.495716
[2026-03-09 18:42:32] 2026-03-09 22:41:58,154 | INFO     | chi2: 1.7418805952701424
[2026-03-09 18:42:32] 2026-03-09 22:41:58,155 | INFO     | current chi2=1.7418805952701424 (change=30.498868408492037 %)
[2026-03-09 18:42:32] 2026-03-09 22:41:58,155 | INFO     | sum of square deviations: 3822136780.0
[2026-03-09 18:42:32] 2026-03-09 22:41:58,157 | INFO     | sum of deviations: -38080245520.0
[2026-03-09 18:42:32] 2026-03-09 22:41:58,157 | INFO     | mean x: 1773088460.0
[2026-03-09 18:42:32] 2026-03-09 22:41:58,157 | INFO     | mean y: 2375352.7316017314
[2026-03-09 18:42:32] 2026-03-09 22:41:58,157 | INFO     | intersect: 17667793356.29104
[2026-03-09 18:42:32] 2026-03-09 22:41:58,158 | INFO     | chi2: 1.7381809994772657
[2026-03-09 18:42:32] 2026-03-09 22:41:58,158 | INFO     | current chi2=1.7381809994772657 (change=0.21239089538757683 %)
[2026-03-09 18:42:32] 2026-03-09 22:41:58,158 | INFO     | right removable region: 230
[2026-03-09 18:42:32] 2026-03-09 22:41:58,159 | INFO     | sum of square deviations: 4075741535.0
[2026-03-09 18:42:32] 2026-03-09 22:41:58,161 | INFO     | sum of deviations: -81874670493.0
[2026-03-09 18:42:32] 2026-03-09 22:41:58,161 | INFO     | mean x: 1773088917.5
[2026-03-09 18:42:32] 2026-03-09 22:41:58,161 | INFO     | mean y: 2380770.127118644
[2026-03-09 18:42:32] 2026-03-09 22:41:58,161 | INFO     | intersect: 35620701909.59618
[2026-03-09 18:42:32] 2026-03-09 22:41:58,161 | INFO     | chi2: 1.2076121780926319
[2026-03-09 18:42:32] 2026-03-09 22:41:58,162 | INFO     | current chi2=1.2076121780926319 (change=51.81620764992386 %)
[2026-03-09 18:42:32] 2026-03-09 22:41:58,162 | INFO     | sum of square deviations: 3822136780.0
[2026-03-09 18:42:32] 2026-03-09 22:41:58,164 | INFO     | sum of deviations: -71897619378.00002
[2026-03-09 18:42:32] 2026-03-09 22:41:58,164 | INFO     | mean x: 1773089070.0
[2026-03-09 18:42:32] 2026-03-09 22:41:58,164 | INFO     | mean y: 2374757.567099567
[2026-03-09 18:42:32] 2026-03-09 22:41:58,165 | INFO     | intersect: 33355676958.895447
[2026-03-09 18:42:32] 2026-03-09 22:41:58,165 | INFO     | chi2: 1.186213044061609
[2026-03-09 18:42:32] 2026-03-09 22:41:58,165 | INFO     | current chi2=1.186213044061609 (change=1.7720203902565674 %)
[2026-03-09 18:42:32] 2026-03-09 22:41:58,165 | INFO     | left removable region: 20
[2026-03-09 18:42:32] 2026-03-09 22:41:58,166 | INFO     | sum of square deviations: 2871616632.5
[2026-03-09 18:42:32] 2026-03-09 22:41:58,167 | INFO     | sum of deviations: -31282523372.0
[2026-03-09 18:42:32] 2026-03-09 22:41:58,168 | INFO     | mean x: 1773089039.5
[2026-03-09 18:42:32] 2026-03-09 22:41:58,168 | INFO     | mean y: 2368995.876190476
[2026-03-09 18:42:32] 2026-03-09 22:41:58,168 | INFO     | intersect: 19317864905.407486
[2026-03-09 18:42:32] 2026-03-09 22:41:58,169 | INFO     | chi2: 0.2880531002292549
[2026-03-09 18:42:32] 2026-03-09 22:41:58,169 | INFO     | current memory leak: -10.89 B/s (using 210 data points, chi2=0.29)
[2026-03-09 18:42:32] 2026-03-09 22:41:58,170 | INFO     | could have reported an average CPU frequency of 2444 MHz (12 samples)
[2026-03-09 18:42:32] 2026-03-09 22:41:58,170 | INFO     | ..............................
[2026-03-09 18:42:32] 2026-03-09 22:41:58,170 | INFO     | . Timing measurements:
[2026-03-09 18:42:32] 2026-03-09 22:41:58,170 | INFO     | . get job = 0 s
[2026-03-09 18:42:32] 2026-03-09 22:41:58,171 | INFO     | . initial setup = 8 s
[2026-03-09 18:42:32] 2026-03-09 22:41:58,171 | INFO     | . payload setup = 6 s
[2026-03-09 18:42:32] 2026-03-09 22:41:58,171 | INFO     | . stage-in = 0 s
[2026-03-09 18:42:32] 2026-03-09 22:41:58,171 | INFO     | . payload execution = 14666 s
[2026-03-09 18:42:32] 2026-03-09 22:41:58,171 | INFO     | . stage-out = 2 s
[2026-03-09 18:42:32] 2026-03-09 22:41:58,171 | INFO     | . log creation = 0 s
[2026-03-09 18:42:32] 2026-03-09 22:41:58,171 | INFO     | ..............................
[2026-03-09 18:42:32] 2026-03-09 22:41:58,282 | INFO     | 
[2026-03-09 18:42:32] 2026-03-09 22:41:58,282 | INFO     | job summary report
[2026-03-09 18:42:32] 2026-03-09 22:41:58,282 | INFO     | --------------------------------------------------
[2026-03-09 18:42:32] 2026-03-09 22:41:58,282 | INFO     | PanDA job id: 7036032359
[2026-03-09 18:42:32] 2026-03-09 22:41:58,282 | INFO     | task id: 48838432
[2026-03-09 18:42:32] 2026-03-09 22:41:58,282 | INFO     | errors: (none)
[2026-03-09 18:42:32] 2026-03-09 22:41:58,282 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-09 18:42:32] 2026-03-09 22:41:58,283 | INFO     | pilot state: finished 
[2026-03-09 18:42:32] 2026-03-09 22:41:58,283 | INFO     | transexitcode: 0
[2026-03-09 18:42:32] 2026-03-09 22:41:58,283 | INFO     | exeerrorcode: 0
[2026-03-09 18:42:32] 2026-03-09 22:41:58,283 | INFO     | exeerrordiag: 
[2026-03-09 18:42:32] 2026-03-09 22:41:58,283 | INFO     | exitcode: 0
[2026-03-09 18:42:32] 2026-03-09 22:41:58,283 | INFO     | exitmsg: OK
[2026-03-09 18:42:32] 2026-03-09 22:41:58,283 | INFO     | cpuconsumptiontime: 57403 s
[2026-03-09 18:42:32] 2026-03-09 22:41:58,283 | INFO     | nevents: 400
[2026-03-09 18:42:32] 2026-03-09 22:41:58,283 | INFO     | neventsw: 0
[2026-03-09 18:42:32] 2026-03-09 22:41:58,284 | INFO     | pid: 3308076
[2026-03-09 18:42:32] 2026-03-09 22:41:58,284 | INFO     | pgrp: 3308076
[2026-03-09 18:42:32] 2026-03-09 22:41:58,284 | INFO     | corecount: 4
[2026-03-09 18:42:32] 2026-03-09 22:41:58,284 | INFO     | event service: False
[2026-03-09 18:42:32] 2026-03-09 22:41:58,284 | INFO     | sizes: {0: 2279163, 1: 2280296, 12: 2280296, 14676: 2311138, 14679: 2320166, 14681: 2320222, 14684: 2320544}
[2026-03-09 18:42:32] 2026-03-09 22:41:58,284 | INFO     | --------------------------------------------------
[2026-03-09 18:42:32] 2026-03-09 22:41:58,284 | INFO     | 
[2026-03-09 18:42:32] 2026-03-09 22:41:58,284 | INFO     | executing command: ls -lF /home/whitlerd/Desktop/BOINC/slots/22
[2026-03-09 18:42:32] 2026-03-09 22:41:58,304 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-09 18:42:32] 2026-03-09 22:41:58,305 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-09 18:42:32] 2026-03-09 22:41:58,305 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-09 18:42:32] 2026-03-09 22:41:58,305 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-09 18:42:32] 2026-03-09 22:41:58,305 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-09 18:42:32] 2026-03-09 22:41:58,305 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-09 18:42:32] 2026-03-09 22:41:58,306 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-09 18:42:32] 2026-03-09 22:41:58,306 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-09 18:42:32] 2026-03-09 22:41:58,306 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-09 18:42:32] 2026-03-09 22:41:58,306 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-09 18:42:32] 2026-03-09 22:41:58,306 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-09 18:42:32] 2026-03-09 22:41:58,306 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-09 18:42:32] 2026-03-09 22:41:58,306 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-09 18:42:32] 2026-03-09 22:41:58,306 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-09 18:42:32] 2026-03-09 22:41:58,307 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-09 18:42:32] 2026-03-09 22:41:58,307 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-09 18:42:32] 2026-03-09 22:41:58,307 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-09 18:42:32] 2026-03-09 22:41:58,307 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-09 18:42:32] 2026-03-09 22:41:58,307 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-09 18:42:32] 2026-03-09 22:41:58,307 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-09 18:42:32] 2026-03-09 22:41:58,307 | INFO     | job 7036032359 has completed (purged errors)
[2026-03-09 18:42:32] 2026-03-09 22:41:58,308 | INFO     | overall cleanup function is called
[2026-03-09 18:42:32] 2026-03-09 22:41:58,311 | INFO     | PID=3303381 has CPU usage=11.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-09 18:42:32] 2026-03-09 22:41:58,311 | INFO     | .. there are 4 such processes running
[2026-03-09 18:42:32] 2026-03-09 22:41:59,318 | INFO     | --- collectZombieJob: --- 10, [3308076]
[2026-03-09 18:42:32] 2026-03-09 22:41:59,318 | INFO     | zombie collector waiting for pid 3308076
[2026-03-09 18:42:32] 2026-03-09 22:41:59,318 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-09 18:42:32] 2026-03-09 22:41:59,318 | INFO     | collected zombie processes
[2026-03-09 18:42:32] 2026-03-09 22:41:59,318 | INFO     | will attempt to kill all subprocesses of pid=3308076
[2026-03-09 18:42:32] 2026-03-09 22:41:59,572 | INFO     | process IDs to be killed: [3308076] (in reverse order)
[2026-03-09 18:42:32] 2026-03-09 22:41:59,654 | WARNING  | found no corresponding commands to process id(s)
[2026-03-09 18:42:32] 2026-03-09 22:41:59,654 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-09 18:42:32] 2026-03-09 22:41:59,660 | INFO     | did not find any defunct processes belonging to 3308076
[2026-03-09 18:42:32] 2026-03-09 22:41:59,664 | INFO     | did not find any defunct processes belonging to 3308076
[2026-03-09 18:42:32] 2026-03-09 22:41:59,665 | INFO     | ready for new job
[2026-03-09 18:42:32] 2026-03-09 22:41:59,665 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-09 18:42:32] 2026-03-09 22:41:59,667 | INFO     | **************************************
[2026-03-09 18:42:32] 2026-03-09 22:41:59,667 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-09 18:42:32] 2026-03-09 22:41:59,667 | INFO     | **************************************
[2026-03-09 18:42:32] 2026-03-09 22:41:59,667 | INFO     | 
[2026-03-09 18:42:32] 2026-03-09 22:41:59,670 | INFO     | architecture information:
[2026-03-09 18:42:32] 2026-03-09 22:41:59,670 | INFO     | executing command: cat /etc/os-release
[2026-03-09 18:42:32] 2026-03-09 22:41:59,684 | INFO     | cat /etc/os-release:
[2026-03-09 18:42:32] NAME="CentOS Linux"
[2026-03-09 18:42:32] VERSION="7 (Core)"
[2026-03-09 18:42:32] ID="centos"
[2026-03-09 18:42:32] ID_LIKE="rhel fedora"
[2026-03-09 18:42:32] VERSION_ID="7"
[2026-03-09 18:42:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-09 18:42:32] ANSI_COLOR="0;31"
[2026-03-09 18:42:32] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-09 18:42:32] HOME_URL="https://www.centos.org/"
[2026-03-09 18:42:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-09 18:42:32] 
[2026-03-09 18:42:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-09 18:42:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-09 18:42:32] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-09 18:42:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-09 18:42:32] 
[2026-03-09 18:42:32] 2026-03-09 22:41:59,684 | INFO     | **************************************
[2026-03-09 18:42:32] 2026-03-09 22:42:00,187 | INFO     | executing command: df -mP /home/whitlerd/Desktop/BOINC/slots/22
[2026-03-09 18:42:32] 2026-03-09 22:42:00,210 | INFO     | sufficient remaining disk space (405869166592 B)
[2026-03-09 18:42:32] 2026-03-09 22:42:00,210 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-09 18:42:32] 2026-03-09 22:42:00,211 | INFO     | current server update state: UPDATING_FINAL
[2026-03-09 18:42:32] 2026-03-09 22:42:00,211 | INFO     | update_server=False
[2026-03-09 18:42:32] 2026-03-09 22:42:00,211 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-09 18:42:32] 2026-03-09 22:42:00,211 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-09 18:42:32] 2026-03-09 22:42:00,211 | INFO     | aborting loop
[2026-03-09 18:42:32] 2026-03-09 22:42:00,212 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-09 18:42:32] 2026-03-09 22:42:00,265 | INFO     | all payload control threads have been joined
[2026-03-09 18:42:32] 2026-03-09 22:42:00,406 | INFO     | all data control threads have been joined
[2026-03-09 18:42:32] 2026-03-09 22:42:00,904 | INFO     | all job control threads have been joined
[2026-03-09 18:42:32] 2026-03-09 22:42:00,996 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-09 18:42:32] 2026-03-09 22:42:01,216 | INFO     | [job] retrieve thread has finished
[2026-03-09 18:42:32] 2026-03-09 22:42:01,217 | INFO     | [job] job monitor thread has finished
[2026-03-09 18:42:32] 2026-03-09 22:42:01,217 | INFO     | [job] queue monitor thread has finished
[2026-03-09 18:42:32] 2026-03-09 22:42:01,270 | INFO     | [payload] control thread has finished
[2026-03-09 18:42:32] 2026-03-09 22:42:01,392 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-09 18:42:32] 2026-03-09 22:42:01,411 | INFO     | [data] control thread has finished
[2026-03-09 18:42:32] 2026-03-09 22:42:01,479 | INFO     | [data] copytool_in thread has finished
[2026-03-09 18:42:32] 2026-03-09 22:42:01,481 | INFO     | [payload] execute_payloads thread has finished
[2026-03-09 18:42:32] 2026-03-09 22:42:01,907 | INFO     | [job] control thread has finished
[2026-03-09 18:42:32] 2026-03-09 22:42:01,957 | INFO     | [job] validate thread has finished
[2026-03-09 18:42:32] 2026-03-09 22:42:02,105 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-09 18:42:32] 2026-03-09 22:42:02,276 | INFO     | [payload] failed_post thread has finished
[2026-03-09 18:42:32] 2026-03-09 22:42:02,451 | INFO     | [job] create_data_payload thread has finished
[2026-03-09 18:42:32] 2026-03-09 22:42:02,552 | INFO     | [payload] validate_pre thread has finished
[2026-03-09 18:42:32] 2026-03-09 22:42:02,628 | INFO     | [payload] validate_post thread has finished
[2026-03-09 18:42:32] 2026-03-09 22:42:03,001 | INFO     | [data] copytool_out thread has finished
[2026-03-09 18:42:32] 2026-03-09 22:42:05,399 | INFO     | [data] queue_monitor thread has finished
[2026-03-09 18:42:32] 2026-03-09 22:42:25,847 | INFO     | [monitor] cgroup control has ended
[2026-03-09 18:42:32] 2026-03-09 22:42:26,853 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139795363981120)>', '<ExcThread(monitor, started 139794734638848)>']
[2026-03-09 18:42:32] 2026-03-09 22:42:30,622 | INFO     | PID=3303381 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-09 18:42:32] 2026-03-09 22:42:30,622 | INFO     | .. there are 4 such processes running
[2026-03-09 18:42:32] 2026-03-09 22:42:30,622 | INFO     | found 0 job(s) in 20 queues
[2026-03-09 18:42:32] 2026-03-09 22:42:30,622 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-09 18:42:32] 2026-03-09 22:42:30,622 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-09 18:42:32] 2026-03-09 22:42:30,622 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-09 18:42:32] 2026-03-09 22:42:30,622 | INFO     | [monitor] control thread has ended
[2026-03-09 18:42:32] 2026-03-09 22:42:31,878 | INFO     | all workflow threads have been joined
[2026-03-09 18:42:32] 2026-03-09 22:42:31,878 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-09 18:42:32] 2026-03-09 22:42:31,879 | INFO     | traces error code: 0
[2026-03-09 18:42:32] 2026-03-09 22:42:31,879 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-09 18:42:32] 2026-03-09 22:42:31,993 [wrapper] ==== pilot stdout END ====
[2026-03-09 18:42:32] 2026-03-09 22:42:31,995 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-09 18:42:32] 2026-03-09 22:42:31,998 [wrapper] pilotpid: 3303381
[2026-03-09 18:42:32] 2026-03-09 22:42:32,005 [wrapper] Pilot exit status: 0
[2026-03-09 18:42:32] 2026-03-09 22:42:32,015 [wrapper] pandaids: 7036032359
[2026-03-09 18:42:32] 2026-03-09 22:42:32,060 [wrapper] cleanup supervisor_pilot 3424303 3303382
[2026-03-09 18:42:32] 2026-03-09 22:42:32,063 [wrapper] Test setup, not cleaning
[2026-03-09 18:42:32] 2026-03-09 22:42:32,067 [wrapper] apfmon messages muted
[2026-03-09 18:42:32] 2026-03-09 22:42:32,069 [wrapper] ==== wrapper stdout END ====
[2026-03-09 18:42:32] 2026-03-09 22:42:32,071 [wrapper] ==== wrapper stderr END ====
[2026-03-09 18:42:32]  *** Error codes and diagnostics ***
[2026-03-09 18:42:32]     "exeErrorCode": 0,
[2026-03-09 18:42:32]     "exeErrorDiag": "",
[2026-03-09 18:42:32]     "pilotErrorCode": 0,
[2026-03-09 18:42:32]     "pilotErrorDiag": "",
[2026-03-09 18:42:32]  *** Listing of results directory ***
[2026-03-09 18:42:32] total 513436
[2026-03-09 18:42:32] -rw-r--r-- 1 whitlerd whitlerd    584627 Mar  2 09:48 pilot3.tar.gz
[2026-03-09 18:42:32] -rwx------ 1 whitlerd whitlerd     36322 Mar  2 10:01 runpilot2-wrapper.sh
[2026-03-09 18:42:32] -rw-r--r-- 1 whitlerd whitlerd      5111 Mar  2 10:01 queuedata.json
[2026-03-09 18:42:32] -rw-rw-r-- 1 whitlerd whitlerd       100 Mar  9 14:36 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-09 18:42:32] -rwxr-xr-x 1 whitlerd whitlerd      7986 Mar  9 14:36 run_atlas
[2026-03-09 18:42:32] -rw-rw-r-- 1 whitlerd whitlerd       105 Mar  9 14:36 job.xml
[2026-03-09 18:42:32] -rw-r--r-- 2 whitlerd whitlerd 289382417 Mar  9 14:36 EVNT.48220101._000248.pool.root.1
[2026-03-09 18:42:32] -rw-r--r-- 2 whitlerd whitlerd     15845 Mar  9 14:36 start_atlas.sh
[2026-03-09 18:42:32] drwxrwx--x 2 whitlerd whitlerd      4096 Mar  9 14:36 shared
[2026-03-09 18:42:32] -rw-r--r-- 2 whitlerd whitlerd    597963 Mar  9 14:36 input.tar.gz
[2026-03-09 18:42:32] -rw-rw-r-- 1 whitlerd whitlerd      9087 Mar  9 14:36 init_data.xml
[2026-03-09 18:42:32] -rw-rw-r-- 1 whitlerd whitlerd         0 Mar  9 14:36 boinc_setup_complete
[2026-03-09 18:42:32] -rw-rw-r-- 1 whitlerd whitlerd         0 Mar  9 14:36 boinc_lockfile
[2026-03-09 18:42:32] -rw-rw-r-- 1 whitlerd whitlerd      2580 Mar  9 14:36 pandaJob.out
[2026-03-09 18:42:32] -rw------- 1 whitlerd whitlerd   1002738 Mar  9 14:36 agis_schedconf.cvmfs.json
[2026-03-09 18:42:32] -rw------- 1 whitlerd whitlerd       425 Mar  9 14:37 workernode_map.json
[2026-03-09 18:42:32] drwx------ 5 whitlerd whitlerd      4096 Mar  9 14:37 pilot3
[2026-03-09 18:42:32] -rw------- 1 whitlerd whitlerd 227397791 Mar  9 18:41 HITS.48838432._006546.pool.root.1
[2026-03-09 18:42:32] -rw-rw-r-- 1 whitlerd whitlerd       530 Mar  9 18:41 boinc_task_state.xml
[2026-03-09 18:42:32] -rw------- 1 whitlerd whitlerd        95 Mar  9 18:41 pilot_heartbeat.json
[2026-03-09 18:42:32] -rw------- 1 whitlerd whitlerd      1030 Mar  9 18:41 memory_monitor_summary.json
[2026-03-09 18:42:32] -rw------- 1 whitlerd whitlerd   1511578 Mar  9 18:41 agis_ddmendpoints.agis.ALL.json
[2026-03-09 18:42:32] -rw------- 1 whitlerd whitlerd    407608 Mar  9 18:41 log.48838432._006546.job.log.tgz.1
[2026-03-09 18:42:32] -rw------- 1 whitlerd whitlerd      6333 Mar  9 18:41 heartbeat.json
[2026-03-09 18:42:32] -rw-rw-r-- 1 whitlerd whitlerd      8192 Mar  9 18:42 boinc_mmap_file
[2026-03-09 18:42:32] -rw-rw-r-- 1 whitlerd whitlerd        28 Mar  9 18:42 wrapper_checkpoint.txt
[2026-03-09 18:42:32] -rw------- 1 whitlerd whitlerd      4835 Mar  9 18:42 pilotlog.txt
[2026-03-09 18:42:32] -rw------- 1 whitlerd whitlerd   2109037 Mar  9 18:42 log.48838432._006546.job.log.1
[2026-03-09 18:42:32] -rw------- 1 whitlerd whitlerd       357 Mar  9 18:42 output.list
[2026-03-09 18:42:32] -rw-rw-r-- 1 whitlerd whitlerd       620 Mar  9 18:42 runtime_log
[2026-03-09 18:42:32] -rw------- 1 whitlerd whitlerd   2539520 Mar  9 18:42 result.tar.gz
[2026-03-09 18:42:32] -rw------- 1 whitlerd whitlerd       649 Mar  9 18:42 uYnKDmDxJH9n9Rq4apOajLDm4fhM0noT9bVooX4SDmimBLDmUZzU9n.diag
[2026-03-09 18:42:32] -rw-rw-r-- 1 whitlerd whitlerd      9036 Mar  9 18:42 runtime_log.err
[2026-03-09 18:42:32] -rw-rw-r-- 1 whitlerd whitlerd     21263 Mar  9 18:42 stderr.txt
[2026-03-09 18:42:32] HITS file was successfully produced:
[2026-03-09 18:42:32] -rw------- 1 whitlerd whitlerd 227397791 Mar  9 18:41 shared/HITS.pool.root.1
[2026-03-09 18:42:32]  *** Contents of shared directory: ***
[2026-03-09 18:42:32] total 507764
[2026-03-09 18:42:32] -rw-r--r-- 2 whitlerd whitlerd 289382417 Mar  9 14:36 ATLAS.root_0
[2026-03-09 18:42:32] -rw-r--r-- 2 whitlerd whitlerd     15845 Mar  9 14:36 start_atlas.sh
[2026-03-09 18:42:32] -rw-r--r-- 2 whitlerd whitlerd    597963 Mar  9 14:36 input.tar.gz
[2026-03-09 18:42:32] -rw------- 1 whitlerd whitlerd 227397791 Mar  9 18:41 HITS.pool.root.1
[2026-03-09 18:42:32] -rw------- 1 whitlerd whitlerd   2539520 Mar  9 18:42 result.tar.gz
18:42:33 (3299106): run_atlas exited; CPU time 57860.144030
18:42:33 (3299106): called boinc_finish(0)

</stderr_txt>
]]>

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