Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:26:22 (1401302): wrapper (7.7.26015): starting
22:26:22 (1401302): wrapper: running run_atlas (--nthreads 4)
[2026-03-09 22:26:22] Arguments: --nthreads 4
[2026-03-09 22:26:22] Threads: 4
[2026-03-09 22:26:22] Checking for CVMFS
[2026-03-09 22:26:22] No cvmfs_config command found, will try listing directly
[2026-03-09 22:26:22] CVMFS is ok
[2026-03-09 22:26:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-09 22:26:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-09 22:26:22] Further information can be found at the LHC@home message board.
[2026-03-09 22:26:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-09 22:26:22] Checking for apptainer binary...
[2026-03-09 22:26:22] which: no apptainer in ((null))
[2026-03-09 22:26:22] apptainer is not installed, using version from CVMFS
[2026-03-09 22:26:22] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-09 22:26:22] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot16/slots/4/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut18.grid.cesnet.cz
[2026-03-09 22:26:22] apptainer works
[2026-03-09 22:26:22] Set ATHENA_PROC_NUMBER=4
[2026-03-09 22:26:22] Set ATHENA_CORE_NUMBER=4
[2026-03-09 22:26:22] Starting ATLAS job with PandaID=7047365547
[2026-03-09 22:26:22] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot16/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
00:07:36 (2550554): wrapper (7.7.26015): starting
00:07:36 (2550554): wrapper: running run_atlas (--nthreads 4)
[2026-03-10 00:07:36] Arguments: --nthreads 4
[2026-03-10 00:07:36] Threads: 4
[2026-03-10 00:07:36] This job has been restarted, cleaning up previous attempt
[2026-03-10 00:07:36] Checking for CVMFS
[2026-03-10 00:07:36] No cvmfs_config command found, will try listing directly
[2026-03-10 00:07:36] CVMFS is ok
[2026-03-10 00:07:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-10 00:07:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-10 00:07:36] Further information can be found at the LHC@home message board.
[2026-03-10 00:07:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-10 00:07:36] Checking for apptainer binary...
[2026-03-10 00:07:36] which: no apptainer in ((null))
[2026-03-10 00:07:36] apptainer is not installed, using version from CVMFS
[2026-03-10 00:07:36] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-10 00:07:36] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot16/slots/4/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut18.grid.cesnet.cz
[2026-03-10 00:07:36] apptainer works
[2026-03-10 00:07:36] Set ATHENA_PROC_NUMBER=4
[2026-03-10 00:07:36] Set ATHENA_CORE_NUMBER=4
[2026-03-10 00:07:36] Starting ATLAS job with PandaID=7047365547
[2026-03-10 00:07:36] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot16/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-10 01:55:18]  *** The last 200 lines of the pilot log: ***
[2026-03-10 01:55:18] 2026-03-10 00:54:44,933 | INFO     | extracted standard memory fields from prmon json
[2026-03-10 01:55:18] 2026-03-10 00:54:44,933 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-10 01:55:18] 2026-03-10 00:54:44,933 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-10 01:55:18] 2026-03-10 00:54:44,933 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-10 01:55:18] 2026-03-10 00:54:44,935 | INFO     | fitting pss+swap vs Time
[2026-03-10 01:55:18] 2026-03-10 00:54:44,935 | INFO     | sum of square deviations: 358927660.0
[2026-03-10 01:55:18] 2026-03-10 00:54:44,935 | INFO     | sum of deviations: 11744281322.000002
[2026-03-10 01:55:18] 2026-03-10 00:54:44,935 | INFO     | mean x: 1773100860.0
[2026-03-10 01:55:18] 2026-03-10 00:54:44,935 | INFO     | mean y: 2294939.8857142855
[2026-03-10 01:55:18] 2026-03-10 00:54:44,935 | INFO     | intersect: -58014396535.27154
[2026-03-10 01:55:18] 2026-03-10 00:54:44,936 | INFO     | chi2: 1.0997839863256451
[2026-03-10 01:55:18] 2026-03-10 00:54:44,936 | INFO     | sum of square deviations: 310052325.0
[2026-03-10 01:55:18] 2026-03-10 00:54:44,936 | INFO     | sum of deviations: 11127460972.999996
[2026-03-10 01:55:18] 2026-03-10 00:54:44,936 | INFO     | mean x: 1773100707.5
[2026-03-10 01:55:18] 2026-03-10 00:54:44,936 | INFO     | mean y: 2293013.72
[2026-03-10 01:55:18] 2026-03-10 00:54:44,936 | INFO     | intersect: -63632478710.39118
[2026-03-10 01:55:18] 2026-03-10 00:54:44,936 | INFO     | chi2: 1.1012639506301583
[2026-03-10 01:55:18] 2026-03-10 00:54:44,936 | INFO     | current chi2=1.1012639506301583 (change=-0.13456863556066737 %)
[2026-03-10 01:55:18] 2026-03-10 00:54:44,936 | INFO     | right removable region: 99
[2026-03-10 01:55:18] 2026-03-10 00:54:44,936 | INFO     | sum of square deviations: 310052325.0
[2026-03-10 01:55:18] 2026-03-10 00:54:44,937 | INFO     | sum of deviations: 1712513085.0
[2026-03-10 01:55:18] 2026-03-10 00:54:44,937 | INFO     | mean x: 1773101012.5
[2026-03-10 01:55:18] 2026-03-10 00:54:44,937 | INFO     | mean y: 2325307.24
[2026-03-10 01:55:18] 2026-03-10 00:54:44,937 | INFO     | intersect: -9791049681.749353
[2026-03-10 01:55:18] 2026-03-10 00:54:44,937 | INFO     | chi2: 0.000717207490946846
[2026-03-10 01:55:18] 2026-03-10 00:54:44,937 | INFO     | current chi2=0.000717207490946846 (change=99.93478651263662 %)
[2026-03-10 01:55:18] 2026-03-10 00:54:44,937 | INFO     | sum of square deviations: 265828240.0
[2026-03-10 01:55:18] 2026-03-10 00:54:44,937 | INFO     | sum of deviations: 1194979264.0000005
[2026-03-10 01:55:18] 2026-03-10 00:54:44,937 | INFO     | mean x: 1773101165.0
[2026-03-10 01:55:18] 2026-03-10 00:54:44,937 | INFO     | mean y: 2327080.094736842
[2026-03-10 01:55:18] 2026-03-10 00:54:44,937 | INFO     | intersect: -7968305103.8645115
[2026-03-10 01:55:18] 2026-03-10 00:54:44,937 | INFO     | chi2: 0.00027840207830864605
[2026-03-10 01:55:18] 2026-03-10 00:54:44,937 | INFO     | current chi2=0.00027840207830864605 (change=61.18249156306162 %)
[2026-03-10 01:55:18] 2026-03-10 00:54:44,938 | INFO     | sum of square deviations: 226022842.5
[2026-03-10 01:55:18] 2026-03-10 00:54:44,938 | INFO     | sum of deviations: 910929622.5
[2026-03-10 01:55:18] 2026-03-10 00:54:44,938 | INFO     | mean x: 1773101317.5
[2026-03-10 01:55:18] 2026-03-10 00:54:44,938 | INFO     | mean y: 2328165.277777778
[2026-03-10 01:55:18] 2026-03-10 00:54:44,938 | INFO     | intersect: -7143721746.931992
[2026-03-10 01:55:18] 2026-03-10 00:54:44,938 | INFO     | chi2: 0.0002135186697425161
[2026-03-10 01:55:18] 2026-03-10 00:54:44,938 | INFO     | current chi2=0.0002135186697425161 (change=23.305648061361804 %)
[2026-03-10 01:55:18] 2026-03-10 00:54:44,938 | INFO     | left removable region: 30
[2026-03-10 01:55:18] 2026-03-10 00:54:44,938 | INFO     | sum of square deviations: 101843770.0
[2026-03-10 01:55:18] 2026-03-10 00:54:44,938 | INFO     | sum of deviations: 295065845.0
[2026-03-10 01:55:18] 2026-03-10 00:54:44,938 | INFO     | mean x: 1773101592.0
[2026-03-10 01:55:18] 2026-03-10 00:54:44,938 | INFO     | mean y: 2330711.275362319
[2026-03-10 01:55:18] 2026-03-10 00:54:44,938 | INFO     | intersect: -5134770159.149262
[2026-03-10 01:55:18] 2026-03-10 00:54:44,938 | INFO     | chi2: 6.369879667730701e-05
[2026-03-10 01:55:18] 2026-03-10 00:54:44,939 | INFO     | current memory leak: 2.90 B/s (using 69 data points, chi2=0.00)
[2026-03-10 01:55:18] 2026-03-10 00:54:44,939 | INFO     | could have reported an average CPU frequency of 3571 MHz (7 samples)
[2026-03-10 01:55:18] 2026-03-10 00:54:44,939 | INFO     | ..............................
[2026-03-10 01:55:18] 2026-03-10 00:54:44,939 | INFO     | . Timing measurements:
[2026-03-10 01:55:18] 2026-03-10 00:54:44,939 | INFO     | . get job = 0 s
[2026-03-10 01:55:18] 2026-03-10 00:54:44,939 | INFO     | . initial setup = 0 s
[2026-03-10 01:55:18] 2026-03-10 00:54:44,939 | INFO     | . payload setup = 5 s
[2026-03-10 01:55:18] 2026-03-10 00:54:44,939 | INFO     | . stage-in = 0 s
[2026-03-10 01:55:18] 2026-03-10 00:54:44,939 | INFO     | . payload execution = 6395 s
[2026-03-10 01:55:18] 2026-03-10 00:54:44,939 | INFO     | . stage-out = 0 s
[2026-03-10 01:55:18] 2026-03-10 00:54:44,939 | INFO     | . log creation = 0 s
[2026-03-10 01:55:18] 2026-03-10 00:54:44,939 | INFO     | ..............................
[2026-03-10 01:55:18] 2026-03-10 00:54:44,988 | INFO     | 
[2026-03-10 01:55:18] 2026-03-10 00:54:44,989 | INFO     | job summary report
[2026-03-10 01:55:18] 2026-03-10 00:54:44,989 | INFO     | --------------------------------------------------
[2026-03-10 01:55:18] 2026-03-10 00:54:44,989 | INFO     | PanDA job id: 7047365547
[2026-03-10 01:55:18] 2026-03-10 00:54:44,989 | INFO     | task id: 48966988
[2026-03-10 01:55:18] 2026-03-10 00:54:44,989 | INFO     | errors: (none)
[2026-03-10 01:55:18] 2026-03-10 00:54:44,989 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-10 01:55:18] 2026-03-10 00:54:44,989 | INFO     | pilot state: finished 
[2026-03-10 01:55:18] 2026-03-10 00:54:44,989 | INFO     | transexitcode: 0
[2026-03-10 01:55:18] 2026-03-10 00:54:44,989 | INFO     | exeerrorcode: 0
[2026-03-10 01:55:18] 2026-03-10 00:54:44,989 | INFO     | exeerrordiag: 
[2026-03-10 01:55:18] 2026-03-10 00:54:44,989 | INFO     | exitcode: 0
[2026-03-10 01:55:18] 2026-03-10 00:54:44,989 | INFO     | exitmsg: OK
[2026-03-10 01:55:18] 2026-03-10 00:54:44,989 | INFO     | cpuconsumptiontime: 24283 s
[2026-03-10 01:55:18] 2026-03-10 00:54:44,989 | INFO     | nevents: 400
[2026-03-10 01:55:18] 2026-03-10 00:54:44,989 | INFO     | neventsw: 0
[2026-03-10 01:55:18] 2026-03-10 00:54:44,989 | INFO     | pid: 2558372
[2026-03-10 01:55:18] 2026-03-10 00:54:44,989 | INFO     | pgrp: 2558372
[2026-03-10 01:55:18] 2026-03-10 00:54:44,989 | INFO     | corecount: 4
[2026-03-10 01:55:18] 2026-03-10 00:54:44,989 | INFO     | event service: False
[2026-03-10 01:55:18] 2026-03-10 00:54:44,989 | INFO     | sizes: {0: 2280282, 11: 2280282, 6404: 2307535, 6406: 2316555, 6407: 2316611, 6408: 2316805}
[2026-03-10 01:55:18] 2026-03-10 00:54:44,989 | INFO     | --------------------------------------------------
[2026-03-10 01:55:18] 2026-03-10 00:54:44,989 | INFO     | 
[2026-03-10 01:55:18] 2026-03-10 00:54:44,989 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot16/slots/4
[2026-03-10 01:55:18] 2026-03-10 00:54:45,008 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-10 01:55:18] 2026-03-10 00:54:45,009 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-10 01:55:18] 2026-03-10 00:54:45,009 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-10 01:55:18] 2026-03-10 00:54:45,009 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-10 01:55:18] 2026-03-10 00:54:45,009 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-10 01:55:18] 2026-03-10 00:54:45,009 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-10 01:55:18] 2026-03-10 00:54:45,009 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-10 01:55:18] 2026-03-10 00:54:45,009 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-10 01:55:18] 2026-03-10 00:54:45,009 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-10 01:55:18] 2026-03-10 00:54:45,009 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-10 01:55:18] 2026-03-10 00:54:45,009 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-10 01:55:18] 2026-03-10 00:54:45,009 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-10 01:55:18] 2026-03-10 00:54:45,009 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-10 01:55:18] 2026-03-10 00:54:45,009 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-10 01:55:18] 2026-03-10 00:54:45,009 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-10 01:55:18] 2026-03-10 00:54:45,009 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-10 01:55:18] 2026-03-10 00:54:45,009 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-10 01:55:18] 2026-03-10 00:54:45,009 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-10 01:55:18] 2026-03-10 00:54:45,009 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-10 01:55:18] 2026-03-10 00:54:45,009 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-10 01:55:18] 2026-03-10 00:54:45,010 | INFO     | job 7047365547 has completed (purged errors)
[2026-03-10 01:55:18] 2026-03-10 00:54:45,010 | INFO     | overall cleanup function is called
[2026-03-10 01:55:18] 2026-03-10 00:54:46,017 | INFO     | --- collectZombieJob: --- 10, [2558372]
[2026-03-10 01:55:18] 2026-03-10 00:54:46,017 | INFO     | zombie collector waiting for pid 2558372
[2026-03-10 01:55:18] 2026-03-10 00:54:46,017 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-10 01:55:18] 2026-03-10 00:54:46,017 | INFO     | collected zombie processes
[2026-03-10 01:55:18] 2026-03-10 00:54:46,017 | INFO     | will attempt to kill all subprocesses of pid=2558372
[2026-03-10 01:55:18] 2026-03-10 00:54:46,601 | INFO     | process IDs to be killed: [2558372] (in reverse order)
[2026-03-10 01:55:18] 2026-03-10 00:54:46,864 | WARNING  | found no corresponding commands to process id(s)
[2026-03-10 01:55:18] 2026-03-10 00:54:46,864 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-10 01:55:18] 2026-03-10 00:54:46,896 | INFO     | did not find any defunct processes belonging to 2558372
[2026-03-10 01:55:18] 2026-03-10 00:54:46,927 | INFO     | did not find any defunct processes belonging to 2558372
[2026-03-10 01:55:18] 2026-03-10 00:54:46,927 | INFO     | ready for new job
[2026-03-10 01:55:18] 2026-03-10 00:54:46,927 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-10 01:55:18] 2026-03-10 00:54:46,928 | INFO     | **************************************
[2026-03-10 01:55:18] 2026-03-10 00:54:46,928 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-10 01:55:18] 2026-03-10 00:54:46,928 | INFO     | **************************************
[2026-03-10 01:55:18] 2026-03-10 00:54:46,928 | INFO     | 
[2026-03-10 01:55:18] 2026-03-10 00:54:46,934 | INFO     | architecture information:
[2026-03-10 01:55:18] 2026-03-10 00:54:46,934 | INFO     | executing command: cat /etc/os-release
[2026-03-10 01:55:18] 2026-03-10 00:54:46,945 | INFO     | cat /etc/os-release:
[2026-03-10 01:55:18] NAME="CentOS Linux"
[2026-03-10 01:55:18] VERSION="7 (Core)"
[2026-03-10 01:55:18] ID="centos"
[2026-03-10 01:55:18] ID_LIKE="rhel fedora"
[2026-03-10 01:55:18] VERSION_ID="7"
[2026-03-10 01:55:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-10 01:55:18] ANSI_COLOR="0;31"
[2026-03-10 01:55:18] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-10 01:55:18] HOME_URL="https://www.centos.org/"
[2026-03-10 01:55:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-10 01:55:18] 
[2026-03-10 01:55:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-10 01:55:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-10 01:55:18] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-10 01:55:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-10 01:55:18] 
[2026-03-10 01:55:18] 2026-03-10 00:54:46,946 | INFO     | **************************************
[2026-03-10 01:55:18] 2026-03-10 00:54:47,448 | INFO     | executing command: df -mP /var/lib/boinc/var/slot16/slots/4
[2026-03-10 01:55:18] 2026-03-10 00:54:47,465 | INFO     | sufficient remaining disk space (21150826496 B)
[2026-03-10 01:55:18] 2026-03-10 00:54:47,465 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-10 01:55:18] 2026-03-10 00:54:47,465 | INFO     | current server update state: UPDATING_FINAL
[2026-03-10 01:55:18] 2026-03-10 00:54:47,465 | INFO     | update_server=False
[2026-03-10 01:55:18] 2026-03-10 00:54:47,465 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-10 01:55:18] 2026-03-10 00:54:47,875 | WARNING  | process 2558372 can no longer be monitored (due to stat problems) - aborting
[2026-03-10 01:55:18] 2026-03-10 00:54:48,210 | INFO     | all data control threads have been joined
[2026-03-10 01:55:18] 2026-03-10 00:54:48,211 | INFO     | using path: /var/lib/boinc/var/slot16/slots/4/memory_monitor_summary.json (trf name=prmon)
[2026-03-10 01:55:18] 2026-03-10 00:54:48,471 | INFO     | [job] retrieve thread has finished
[2026-03-10 01:55:18] 2026-03-10 00:54:48,490 | INFO     | [payload] execute_payloads thread has finished
[2026-03-10 01:55:18] 2026-03-10 00:54:48,632 | INFO     | all job control threads have been joined
[2026-03-10 01:55:18] 2026-03-10 00:54:48,657 | INFO     | all payload control threads have been joined
[2026-03-10 01:55:18] 2026-03-10 00:54:48,709 | INFO     | number of running child processes to parent process 2558372: 1
[2026-03-10 01:55:18] 2026-03-10 00:54:48,710 | INFO     | maximum number of monitored processes: 6
[2026-03-10 01:55:18] 2026-03-10 00:54:48,710 | INFO     | aborting job monitoring since job object (job id=7047365547) has expired
[2026-03-10 01:55:18] 2026-03-10 00:54:48,710 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-10 01:55:18] 2026-03-10 00:54:48,710 | INFO     | will abort loop
[2026-03-10 01:55:18] 2026-03-10 00:54:48,831 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-10 01:55:18] 2026-03-10 00:54:48,943 | INFO     | [payload] validate_post thread has finished
[2026-03-10 01:55:18] 2026-03-10 00:54:49,217 | INFO     | [data] control thread has finished
[2026-03-10 01:55:18] 2026-03-10 00:54:49,455 | INFO     | [payload] failed_post thread has finished
[2026-03-10 01:55:18] 2026-03-10 00:54:49,537 | INFO     | [job] create_data_payload thread has finished
[2026-03-10 01:55:18] 2026-03-10 00:54:49,563 | INFO     | [job] validate thread has finished
[2026-03-10 01:55:18] 2026-03-10 00:54:49,637 | INFO     | [job] control thread has finished
[2026-03-10 01:55:18] 2026-03-10 00:54:49,661 | INFO     | [data] copytool_in thread has finished
[2026-03-10 01:55:18] 2026-03-10 00:54:49,662 | INFO     | [payload] control thread has finished
[2026-03-10 01:55:18] 2026-03-10 00:54:49,714 | INFO     | [job] job monitor thread has finished
[2026-03-10 01:55:18] 2026-03-10 00:54:49,908 | INFO     | [payload] validate_pre thread has finished
[2026-03-10 01:55:18] 2026-03-10 00:54:49,998 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-10 01:55:18] 2026-03-10 00:54:50,281 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-10 01:55:18] 2026-03-10 00:54:50,836 | INFO     | [data] copytool_out thread has finished
[2026-03-10 01:55:18] 2026-03-10 00:54:51,003 | INFO     | [job] queue monitor thread has finished
[2026-03-10 01:55:18] 2026-03-10 00:54:54,289 | INFO     | [data] queue_monitor thread has finished
[2026-03-10 01:55:18] 2026-03-10 00:54:56,144 | INFO     | [monitor] cgroup control has ended
[2026-03-10 01:55:18] 2026-03-10 00:54:58,020 | INFO     | job.realtimelogging is not enabled
[2026-03-10 01:55:18] 2026-03-10 00:54:59,025 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-10 01:55:18] 2026-03-10 00:54:59,641 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22801524037440)>', '<ExcThread(monitor, started 22801280132864)>']
[2026-03-10 01:55:18] 2026-03-10 00:55:04,666 | INFO     | all workflow threads have been joined
[2026-03-10 01:55:18] 2026-03-10 00:55:04,666 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-10 01:55:18] 2026-03-10 00:55:04,666 | INFO     | traces error code: 0
[2026-03-10 01:55:18] 2026-03-10 00:55:04,667 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-10 01:55:18] 2026-03-10 00:55:18,230 | INFO     | PID=2555113 has CPU usage=9.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-10 01:55:18] 2026-03-10 00:55:18,231 | INFO     | .. there are 64 such processes running
[2026-03-10 01:55:18] 2026-03-10 00:55:18,231 | INFO     | found 0 job(s) in 20 queues
[2026-03-10 01:55:18] 2026-03-10 00:55:18,231 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-10 01:55:18] 2026-03-10 00:55:18,232 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-10 01:55:18] 2026-03-10 00:55:18,232 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-10 01:55:18] 2026-03-10 00:55:18,232 | INFO     | [monitor] control thread has ended
[2026-03-10 01:55:18] 2026-03-10 00:55:18,345 [wrapper] ==== pilot stdout END ====
[2026-03-10 01:55:18] 2026-03-10 00:55:18,347 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-10 01:55:18] 2026-03-10 00:55:18,350 [wrapper] pilotpid: 2555113
[2026-03-10 01:55:18] 2026-03-10 00:55:18,359 [wrapper] Pilot exit status: 0
[2026-03-10 01:55:18] 2026-03-10 00:55:18,395 [wrapper] pandaids: 7047365547 7047365547
[2026-03-10 01:55:18] 2026-03-10 00:55:18,564 [wrapper] cleanup supervisor_pilot 3729729 2555114
[2026-03-10 01:55:18] 2026-03-10 00:55:18,588 [wrapper] Test setup, not cleaning
[2026-03-10 01:55:18] 2026-03-10 00:55:18,625 [wrapper] apfmon messages muted
[2026-03-10 01:55:18] 2026-03-10 00:55:18,637 [wrapper] ==== wrapper stdout END ====
[2026-03-10 01:55:18] 2026-03-10 00:55:18,675 [wrapper] ==== wrapper stderr END ====
[2026-03-10 01:55:18]  *** Error codes and diagnostics ***
[2026-03-10 01:55:18]     "exeErrorCode": 0,
[2026-03-10 01:55:18]     "exeErrorDiag": "",
[2026-03-10 01:55:18]     "pilotErrorCode": 0,
[2026-03-10 01:55:18]     "pilotErrorDiag": "",
[2026-03-10 01:55:18]  *** Listing of results directory ***
[2026-03-10 01:55:19] total 614069
[2026-03-10 01:55:19] drwx------. 5 boinc boinc        22 Feb  2 16:00 pilot3
[2026-03-10 01:55:19] -rw-r--r--. 1 boinc boinc    584627 Mar  9 14:02 pilot3.tar.gz
[2026-03-10 01:55:19] -rwx------. 1 boinc boinc     36322 Mar  9 15:06 runpilot2-wrapper.sh
[2026-03-10 01:55:19] -rw-r--r--. 1 boinc boinc      5111 Mar  9 15:06 queuedata.json
[2026-03-10 01:55:19] -rw-r--r--. 1 boinc boinc       100 Mar  9 22:26 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-10 01:55:19] -rwxr-xr-x. 1 boinc boinc      7986 Mar  9 22:26 run_atlas
[2026-03-10 01:55:19] -rw-r--r--. 1 boinc boinc       105 Mar  9 22:26 job.xml
[2026-03-10 01:55:19] -rw-r--r--. 3 boinc boinc 212931263 Mar  9 22:26 EVNT.48966985._000908.pool.root.1
[2026-03-10 01:55:19] -rw-r--r--. 3 boinc boinc 212931263 Mar  9 22:26 ATLAS.root_0
[2026-03-10 01:55:19] -rw-r--r--. 2 boinc boinc     15845 Mar  9 22:26 start_atlas.sh
[2026-03-10 01:55:19] drwxrwx--x. 2 boinc boinc         5 Mar  9 22:26 shared
[2026-03-10 01:55:19] -rw-r--r--. 2 boinc boinc    597969 Mar  9 22:26 input.tar.gz
[2026-03-10 01:55:19] -rw-r--r--. 1 boinc boinc         0 Mar  9 22:26 boinc_lockfile
[2026-03-10 01:55:19] -rw-r--r--. 1 boinc boinc      6710 Mar 10 00:07 init_data.xml
[2026-03-10 01:55:19] -rw-r--r--. 1 boinc boinc      2592 Mar 10 00:07 pandaJob.out
[2026-03-10 01:55:19] -rw-------. 1 boinc boinc   1002738 Mar 10 00:07 agis_schedconf.cvmfs.json
[2026-03-10 01:55:19] -rw-------. 1 boinc boinc       444 Mar 10 00:07 workernode_map.json
[2026-03-10 01:55:19] -rw-------. 1 boinc boinc 200321702 Mar 10 01:54 HITS.48966988._023336.pool.root.1
[2026-03-10 01:55:19] -rw-r--r--. 1 boinc boinc       531 Mar 10 01:54 boinc_task_state.xml
[2026-03-10 01:55:19] -rw-------. 1 boinc boinc      1045 Mar 10 01:54 memory_monitor_summary.json
[2026-03-10 01:55:19] -rw-------. 1 boinc boinc   1511578 Mar 10 01:54 agis_ddmendpoints.agis.ALL.json
[2026-03-10 01:55:19] -rw-------. 1 boinc boinc    296915 Mar 10 01:54 log.48966988._023336.job.log.tgz.1
[2026-03-10 01:55:19] -rw-------. 1 boinc boinc      6380 Mar 10 01:54 heartbeat.json
[2026-03-10 01:55:19] -rw-r--r--. 1 boinc boinc      8192 Mar 10 01:55 boinc_mmap_file
[2026-03-10 01:55:19] -rw-r--r--. 1 boinc boinc        28 Mar 10 01:55 wrapper_checkpoint.txt
[2026-03-10 01:55:19] -rw-------. 1 boinc boinc       823 Mar 10 01:55 pilotlog.txt
[2026-03-10 01:55:19] -rw-------. 1 boinc boinc        97 Mar 10 01:55 pilot_heartbeat.json
[2026-03-10 01:55:19] -rw-------. 1 boinc boinc    917799 Mar 10 01:55 log.48966988._023336.job.log.1
[2026-03-10 01:55:19] -rw-------. 1 boinc boinc       357 Mar 10 01:55 output.list
[2026-03-10 01:55:19] -rw-r--r--. 1 boinc boinc       620 Mar 10 01:55 runtime_log
[2026-03-10 01:55:19] -rw-------. 1 boinc boinc   1228800 Mar 10 01:55 result.tar.gz
[2026-03-10 01:55:19] -rw-r--r--. 1 boinc boinc      9281 Mar 10 01:55 runtime_log.err
[2026-03-10 01:55:19] -rw-------. 1 boinc boinc       794 Mar 10 01:55 PLONDmPQqJ9n9Rq4apOajLDm4fhM0noT9bVooX4SDmJwZLDmUvxRmn.diag
[2026-03-10 01:55:19] -rw-r--r--. 1 boinc boinc     22752 Mar 10 01:55 stderr.txt
[2026-03-10 01:55:19] HITS file was successfully produced:
[2026-03-10 01:55:19] -rw-------. 1 boinc boinc 200321702 Mar 10 01:54 shared/HITS.pool.root.1
[2026-03-10 01:55:19]  *** Contents of shared directory: ***
[2026-03-10 01:55:19] total 404467
[2026-03-10 01:55:19] -rw-r--r--. 3 boinc boinc 212931263 Mar  9 22:26 ATLAS.root_0
[2026-03-10 01:55:19] -rw-r--r--. 2 boinc boinc     15845 Mar  9 22:26 start_atlas.sh
[2026-03-10 01:55:19] -rw-r--r--. 2 boinc boinc    597969 Mar  9 22:26 input.tar.gz
[2026-03-10 01:55:19] -rw-------. 1 boinc boinc 200321702 Mar 10 01:54 HITS.pool.root.1
[2026-03-10 01:55:19] -rw-------. 1 boinc boinc   1228800 Mar 10 01:55 result.tar.gz
01:55:20 (2550554): run_atlas exited; CPU time 24606.937611
01:55:20 (2550554): called boinc_finish(0)

</stderr_txt>
]]>

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