Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:45:01 (18651): wrapper (7.7.26015): starting
08:45:01 (18651): wrapper: running run_atlas (--nthreads 4)
[2026-03-11 08:45:01] Arguments: --nthreads 4
[2026-03-11 08:45:01] Threads: 4
[2026-03-11 08:45:01] Checking for CVMFS
[2026-03-11 08:45:01] No cvmfs_config command found, will try listing directly
[2026-03-11 08:45:01] CVMFS is ok
[2026-03-11 08:45:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-11 08:45:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-11 08:45:01] Further information can be found at the LHC@home message board.
[2026-03-11 08:45:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-11 08:45:01] Checking for apptainer binary...
[2026-03-11 08:45:01] which: no apptainer in ((null))
[2026-03-11 08:45:01] apptainer is not installed, using version from CVMFS
[2026-03-11 08:45:01] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-11 08:45:01] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot36/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut04.grid.cesnet.cz
[2026-03-11 08:45:01] apptainer works
[2026-03-11 08:45:01] Set ATHENA_PROC_NUMBER=4
[2026-03-11 08:45:01] Set ATHENA_CORE_NUMBER=4
[2026-03-11 08:45:01] Starting ATLAS job with PandaID=7041005088
[2026-03-11 08:45:01] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot36/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-11 11:53:35]  *** The last 200 lines of the pilot log: ***
[2026-03-11 11:53:35] 2026-03-11 10:43:41,837 | INFO     | extracted standard memory fields from prmon json
[2026-03-11 11:53:35] 2026-03-11 10:43:41,837 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-11 11:53:35] 2026-03-11 10:43:41,838 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-11 11:53:35] 2026-03-11 10:43:41,838 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-11 11:53:35] 2026-03-11 10:43:41,841 | INFO     | fitting pss+swap vs Time
[2026-03-11 11:53:35] 2026-03-11 10:43:41,842 | INFO     | sum of square deviations: 1690450300.0
[2026-03-11 11:53:35] 2026-03-11 10:43:41,843 | INFO     | sum of deviations: 4209758657.0
[2026-03-11 11:53:35] 2026-03-11 10:43:41,843 | INFO     | mean x: 1773220478.5
[2026-03-11 11:53:35] 2026-03-11 10:43:41,843 | INFO     | mean y: 2297338.375
[2026-03-11 11:53:35] 2026-03-11 10:43:41,843 | INFO     | intersect: -4413585376.505796
[2026-03-11 11:53:35] 2026-03-11 10:43:41,844 | INFO     | chi2: 2.3318105380767613
[2026-03-11 11:53:35] 2026-03-11 10:43:41,844 | INFO     | sum of square deviations: 1550429070.0
[2026-03-11 11:53:35] 2026-03-11 10:43:41,845 | INFO     | sum of deviations: 16073135097.999998
[2026-03-11 11:53:35] 2026-03-11 10:43:41,845 | INFO     | mean x: 1773220326.0
[2026-03-11 11:53:35] 2026-03-11 10:43:41,845 | INFO     | mean y: 2309952.9122807016
[2026-03-11 11:53:35] 2026-03-11 10:43:41,845 | INFO     | intersect: -18380478663.349667
[2026-03-11 11:53:35] 2026-03-11 10:43:41,846 | INFO     | chi2: 1.3388614863858332
[2026-03-11 11:53:35] 2026-03-11 10:43:41,846 | INFO     | current chi2=1.3388614863858332 (change=42.58274999091032 %)
[2026-03-11 11:53:35] 2026-03-11 10:43:41,846 | INFO     | sum of square deviations: 1418361477.5
[2026-03-11 11:53:35] 2026-03-11 10:43:41,847 | INFO     | sum of deviations: 15575871576.999996
[2026-03-11 11:53:35] 2026-03-11 10:43:41,847 | INFO     | mean x: 1773220173.5
[2026-03-11 11:53:35] 2026-03-11 10:43:41,847 | INFO     | mean y: 2309378.5542168673
[2026-03-11 11:53:35] 2026-03-11 10:43:41,847 | INFO     | intersect: -19470476747.069847
[2026-03-11 11:53:35] 2026-03-11 10:43:41,847 | INFO     | chi2: 1.3400102666538933
[2026-03-11 11:53:35] 2026-03-11 10:43:41,848 | INFO     | current chi2=1.3400102666538933 (change=-0.08580277196270282 %)
[2026-03-11 11:53:35] 2026-03-11 10:43:41,848 | INFO     | right removable region: 165
[2026-03-11 11:53:35] 2026-03-11 10:43:41,848 | INFO     | sum of square deviations: 1550429070.0
[2026-03-11 11:53:35] 2026-03-11 10:43:41,849 | INFO     | sum of deviations: -17804348587.0
[2026-03-11 11:53:35] 2026-03-11 10:43:41,849 | INFO     | mean x: 1773220631.0
[2026-03-11 11:53:35] 2026-03-11 10:43:41,849 | INFO     | mean y: 2320960.409356725
[2026-03-11 11:53:35] 2026-03-11 10:43:41,849 | INFO     | intersect: 20365095915.334637
[2026-03-11 11:53:35] 2026-03-11 10:43:41,850 | INFO     | chi2: 1.0382406152606838
[2026-03-11 11:53:35] 2026-03-11 10:43:41,850 | INFO     | current chi2=1.0382406152606838 (change=55.47491537983152 %)
[2026-03-11 11:53:35] 2026-03-11 10:43:41,850 | INFO     | sum of square deviations: 1418361477.5
[2026-03-11 11:53:35] 2026-03-11 10:43:41,851 | INFO     | sum of deviations: -15856828122.0
[2026-03-11 11:53:35] 2026-03-11 10:43:41,851 | INFO     | mean x: 1773220783.5
[2026-03-11 11:53:35] 2026-03-11 10:43:41,851 | INFO     | mean y: 2318712.746987952
[2026-03-11 11:53:35] 2026-03-11 10:43:41,851 | INFO     | intersect: 19826360490.783554
[2026-03-11 11:53:35] 2026-03-11 10:43:41,852 | INFO     | chi2: 1.0369780572562504
[2026-03-11 11:53:35] 2026-03-11 10:43:41,852 | INFO     | current chi2=1.0369780572562504 (change=0.1216055301512566 %)
[2026-03-11 11:53:35] 2026-03-11 10:43:41,852 | INFO     | left removable region: 20
[2026-03-11 11:53:35] 2026-03-11 10:43:41,852 | INFO     | sum of square deviations: 945282840.0
[2026-03-11 11:53:35] 2026-03-11 10:43:41,853 | INFO     | sum of deviations: -1312759528.0
[2026-03-11 11:53:35] 2026-03-11 10:43:41,853 | INFO     | mean x: 1773220753.0
[2026-03-11 11:53:35] 2026-03-11 10:43:41,853 | INFO     | mean y: 2329010.103448276
[2026-03-11 11:53:35] 2026-03-11 10:43:41,853 | INFO     | intersect: 2464885548.999346
[2026-03-11 11:53:35] 2026-03-11 10:43:41,853 | INFO     | chi2: 0.008365133401159594
[2026-03-11 11:53:35] 2026-03-11 10:43:41,854 | INFO     | current memory leak: -1.39 B/s (using 145 data points, chi2=0.01)
[2026-03-11 11:53:35] 2026-03-11 10:43:41,854 | INFO     | could have reported an average CPU frequency of 2561 MHz (9 samples)
[2026-03-11 11:53:35] 2026-03-11 10:43:41,854 | INFO     | ..............................
[2026-03-11 11:53:35] 2026-03-11 10:43:41,854 | INFO     | . Timing measurements:
[2026-03-11 11:53:35] 2026-03-11 10:43:41,854 | INFO     | . get job = 0 s
[2026-03-11 11:53:35] 2026-03-11 10:43:41,855 | INFO     | . initial setup = 6 s
[2026-03-11 11:53:35] 2026-03-11 10:43:41,855 | INFO     | . payload setup = 6 s
[2026-03-11 11:53:35] 2026-03-11 10:43:41,855 | INFO     | . stage-in = 0 s
[2026-03-11 11:53:35] 2026-03-11 10:43:41,855 | INFO     | . payload execution = 10680 s
[2026-03-11 11:53:35] 2026-03-11 10:43:41,855 | INFO     | . stage-out = 0 s
[2026-03-11 11:53:35] 2026-03-11 10:43:41,855 | INFO     | . log creation = 0 s
[2026-03-11 11:53:35] 2026-03-11 10:43:41,855 | INFO     | ..............................
[2026-03-11 11:53:35] 2026-03-11 10:43:42,379 | INFO     | 
[2026-03-11 11:53:35] 2026-03-11 10:43:42,379 | INFO     | job summary report
[2026-03-11 11:53:35] 2026-03-11 10:43:42,379 | INFO     | --------------------------------------------------
[2026-03-11 11:53:35] 2026-03-11 10:43:42,379 | INFO     | PanDA job id: 7041005088
[2026-03-11 11:53:35] 2026-03-11 10:43:42,380 | INFO     | task id: 48955010
[2026-03-11 11:53:35] 2026-03-11 10:43:42,380 | INFO     | errors: (none)
[2026-03-11 11:53:35] 2026-03-11 10:43:42,380 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-11 11:53:35] 2026-03-11 10:43:42,380 | INFO     | pilot state: finished 
[2026-03-11 11:53:35] 2026-03-11 10:43:42,380 | INFO     | transexitcode: 0
[2026-03-11 11:53:35] 2026-03-11 10:43:42,380 | INFO     | exeerrorcode: 0
[2026-03-11 11:53:35] 2026-03-11 10:43:42,380 | INFO     | exeerrordiag: 
[2026-03-11 11:53:35] 2026-03-11 10:43:42,380 | INFO     | exitcode: 0
[2026-03-11 11:53:35] 2026-03-11 10:43:42,380 | INFO     | exitmsg: OK
[2026-03-11 11:53:35] 2026-03-11 10:43:42,380 | INFO     | cpuconsumptiontime: 40177 s
[2026-03-11 11:53:35] 2026-03-11 10:43:42,380 | INFO     | nevents: 400
[2026-03-11 11:53:35] 2026-03-11 10:43:42,380 | INFO     | neventsw: 0
[2026-03-11 11:53:35] 2026-03-11 10:43:42,380 | INFO     | pid: 27558
[2026-03-11 11:53:35] 2026-03-11 10:43:42,381 | INFO     | pgrp: 27558
[2026-03-11 11:53:35] 2026-03-11 10:43:42,381 | INFO     | corecount: 4
[2026-03-11 11:53:35] 2026-03-11 10:43:42,381 | INFO     | event service: False
[2026-03-11 11:53:35] 2026-03-11 10:43:42,381 | INFO     | sizes: {0: 2279984, 1: 2280190, 11: 2280218, 10690: 2309303, 10691: 2318323, 10692: 2318379, 10693: 2318765}
[2026-03-11 11:53:35] 2026-03-11 10:43:42,381 | INFO     | --------------------------------------------------
[2026-03-11 11:53:35] 2026-03-11 10:43:42,381 | INFO     | 
[2026-03-11 11:53:35] 2026-03-11 10:43:42,381 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot36/slots/0
[2026-03-11 11:53:35] 2026-03-11 10:43:42,403 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-11 11:53:35] 2026-03-11 10:43:42,403 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-11 11:53:35] 2026-03-11 10:43:42,403 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-11 11:53:35] 2026-03-11 10:43:42,404 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-11 11:53:35] 2026-03-11 10:43:42,404 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-11 11:53:35] 2026-03-11 10:43:42,404 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-11 11:53:35] 2026-03-11 10:43:42,404 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-11 11:53:35] 2026-03-11 10:43:42,404 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-11 11:53:35] 2026-03-11 10:43:42,404 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-11 11:53:35] 2026-03-11 10:43:42,404 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-11 11:53:35] 2026-03-11 10:43:42,404 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-11 11:53:35] 2026-03-11 10:43:42,404 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-11 11:53:35] 2026-03-11 10:43:42,404 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-11 11:53:35] 2026-03-11 10:43:42,405 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-11 11:53:35] 2026-03-11 10:43:42,405 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-11 11:53:35] 2026-03-11 10:43:42,406 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-11 11:53:35] 2026-03-11 10:43:42,406 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-11 11:53:35] 2026-03-11 10:43:42,406 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-11 11:53:35] 2026-03-11 10:43:42,406 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-11 11:53:35] 2026-03-11 10:43:42,406 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-11 11:53:35] 2026-03-11 10:43:42,406 | INFO     | job 7041005088 has completed (purged errors)
[2026-03-11 11:53:35] 2026-03-11 10:43:42,406 | INFO     | overall cleanup function is called
[2026-03-11 11:53:35] 2026-03-11 10:43:43,414 | INFO     | --- collectZombieJob: --- 10, [27558]
[2026-03-11 11:53:35] 2026-03-11 10:43:43,414 | INFO     | zombie collector waiting for pid 27558
[2026-03-11 11:53:35] 2026-03-11 10:43:43,414 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-11 11:53:35] 2026-03-11 10:43:43,414 | INFO     | collected zombie processes
[2026-03-11 11:53:35] 2026-03-11 10:43:43,414 | INFO     | will attempt to kill all subprocesses of pid=27558
[2026-03-11 11:53:35] 2026-03-11 10:43:43,825 | INFO     | process IDs to be killed: [27558] (in reverse order)
[2026-03-11 11:53:35] 2026-03-11 10:43:43,966 | WARNING  | found no corresponding commands to process id(s)
[2026-03-11 11:53:35] 2026-03-11 10:43:43,966 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-11 11:53:35] 2026-03-11 10:43:43,979 | INFO     | did not find any defunct processes belonging to 27558
[2026-03-11 11:53:35] 2026-03-11 10:43:43,992 | INFO     | did not find any defunct processes belonging to 27558
[2026-03-11 11:53:35] 2026-03-11 10:43:43,993 | INFO     | ready for new job
[2026-03-11 11:53:35] 2026-03-11 10:43:43,993 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-11 11:53:35] 2026-03-11 10:43:43,995 | INFO     | **************************************
[2026-03-11 11:53:35] 2026-03-11 10:43:43,995 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-11 11:53:35] 2026-03-11 10:43:43,995 | INFO     | **************************************
[2026-03-11 11:53:35] 2026-03-11 10:43:43,995 | INFO     | 
[2026-03-11 11:53:35] 2026-03-11 10:43:43,999 | INFO     | architecture information:
[2026-03-11 11:53:35] 2026-03-11 10:43:44,000 | INFO     | executing command: cat /etc/os-release
[2026-03-11 11:53:35] 2026-03-11 10:43:44,018 | INFO     | cat /etc/os-release:
[2026-03-11 11:53:35] NAME="CentOS Linux"
[2026-03-11 11:53:35] VERSION="7 (Core)"
[2026-03-11 11:53:35] ID="centos"
[2026-03-11 11:53:35] ID_LIKE="rhel fedora"
[2026-03-11 11:53:35] VERSION_ID="7"
[2026-03-11 11:53:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-11 11:53:35] ANSI_COLOR="0;31"
[2026-03-11 11:53:35] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-11 11:53:35] HOME_URL="https://www.centos.org/"
[2026-03-11 11:53:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-11 11:53:35] 
[2026-03-11 11:53:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-11 11:53:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-11 11:53:35] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-11 11:53:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-11 11:53:35] 
[2026-03-11 11:53:35] 2026-03-11 10:43:44,018 | INFO     | **************************************
[2026-03-11 11:53:35] 2026-03-11 10:43:44,521 | INFO     | executing command: df -mP /var/lib/boinc/var/slot36/slots/0
[2026-03-11 11:53:35] 2026-03-11 10:43:44,542 | INFO     | sufficient remaining disk space (23265804288 B)
[2026-03-11 11:53:35] 2026-03-11 10:43:44,542 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-11 11:53:35] 2026-03-11 10:43:44,543 | INFO     | current server update state: UPDATING_FINAL
[2026-03-11 11:53:35] 2026-03-11 10:43:44,543 | INFO     | update_server=False
[2026-03-11 11:53:35] 2026-03-11 10:43:44,543 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-11 11:53:35] 2026-03-11 10:43:44,946 | INFO     | all data control threads have been joined
[2026-03-11 11:53:35] 2026-03-11 10:43:45,052 | INFO     | all job control threads have been joined
[2026-03-11 11:53:35] 2026-03-11 10:43:45,190 | WARNING  | process 27558 can no longer be monitored (due to stat problems) - aborting
[2026-03-11 11:53:35] 2026-03-11 10:43:45,511 | INFO     | using path: /var/lib/boinc/var/slot36/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-11 11:53:35] 2026-03-11 10:43:45,548 | INFO     | [job] retrieve thread has finished
[2026-03-11 11:53:35] 2026-03-11 10:43:45,847 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-11 11:53:35] 2026-03-11 10:43:45,876 | INFO     | all payload control threads have been joined
[2026-03-11 11:53:35] 2026-03-11 10:43:45,929 | INFO     | [payload] validate_pre thread has finished
[2026-03-11 11:53:35] 2026-03-11 10:43:45,947 | INFO     | number of running child processes to parent process 27558: 1
[2026-03-11 11:53:35] 2026-03-11 10:43:45,948 | INFO     | maximum number of monitored processes: 6
[2026-03-11 11:53:35] 2026-03-11 10:43:45,948 | INFO     | aborting job monitoring since job object (job id=7041005088) has expired
[2026-03-11 11:53:35] 2026-03-11 10:43:45,948 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-11 11:53:35] 2026-03-11 10:43:45,948 | INFO     | will abort loop
[2026-03-11 11:53:35] 2026-03-11 10:43:45,951 | INFO     | [data] control thread has finished
[2026-03-11 11:53:35] 2026-03-11 10:43:46,016 | INFO     | [data] copytool_in thread has finished
[2026-03-11 11:53:35] 2026-03-11 10:43:46,057 | INFO     | [job] control thread has finished
[2026-03-11 11:53:35] 2026-03-11 10:43:46,087 | INFO     | [payload] failed_post thread has finished
[2026-03-11 11:53:35] 2026-03-11 10:43:46,341 | INFO     | [payload] execute_payloads thread has finished
[2026-03-11 11:53:35] 2026-03-11 10:43:46,835 | INFO     | [payload] validate_post thread has finished
[2026-03-11 11:53:35] 2026-03-11 10:43:46,865 | INFO     | [job] create_data_payload thread has finished
[2026-03-11 11:53:35] 2026-03-11 10:43:46,881 | INFO     | [payload] control thread has finished
[2026-03-11 11:53:35] 2026-03-11 10:43:46,953 | INFO     | [job] job monitor thread has finished
[2026-03-11 11:53:35] 2026-03-11 10:43:46,958 | INFO     | [job] validate thread has finished
[2026-03-11 11:53:35] 2026-03-11 10:43:46,959 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-11 11:53:35] 2026-03-11 10:43:47,110 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-11 11:53:35] 2026-03-11 10:43:47,853 | INFO     | [data] copytool_out thread has finished
[2026-03-11 11:53:35] 2026-03-11 10:43:47,963 | INFO     | [job] queue monitor thread has finished
[2026-03-11 11:53:35] 2026-03-11 10:43:51,115 | INFO     | [data] queue_monitor thread has finished
[2026-03-11 11:53:35] 2026-03-11 10:43:55,168 | INFO     | job.realtimelogging is not enabled
[2026-03-11 11:53:35] 2026-03-11 10:43:56,173 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-11 11:53:35] 2026-03-11 10:44:14,329 | INFO     | PID=22711 has CPU usage=9.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-11 11:53:35] 2026-03-11 10:44:14,329 | INFO     | .. there are 12 such processes running
[2026-03-11 11:53:35] 2026-03-11 10:44:14,329 | INFO     | found 0 job(s) in 20 queues
[2026-03-11 11:53:35] 2026-03-11 10:44:14,329 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-11 11:53:35] 2026-03-11 10:44:14,329 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-11 11:53:35] 2026-03-11 10:44:35,302 | INFO     | [monitor] cgroup control has ended
[2026-03-11 11:53:35] 2026-03-11 10:44:37,155 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23054423217984)>', '<ExcThread(monitor, started 23054186198784)>']
[2026-03-11 11:53:35] 2026-03-11 10:44:37,434 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-11 11:53:35] 2026-03-11 10:44:37,435 | INFO     | [monitor] control thread has ended
[2026-03-11 11:53:35] 2026-03-11 10:44:42,180 | INFO     | all workflow threads have been joined
[2026-03-11 11:53:35] 2026-03-11 10:44:42,180 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-11 11:53:35] 2026-03-11 10:44:42,180 | INFO     | traces error code: 0
[2026-03-11 11:53:35] 2026-03-11 10:44:42,181 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-11 11:53:35] 2026-03-11 10:44:42,337 [wrapper] ==== pilot stdout END ====
[2026-03-11 11:53:35] 2026-03-11 10:44:42,340 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-11 11:53:35] 2026-03-11 10:44:42,342 [wrapper] pilotpid: 22711
[2026-03-11 11:53:35] 2026-03-11 10:44:42,345 [wrapper] Pilot exit status: 0
[2026-03-11 11:53:35] 2026-03-11 10:44:42,355 [wrapper] pandaids: 7041005088
[2026-03-11 11:53:35] 2026-03-11 10:44:42,441 [wrapper] cleanup supervisor_pilot  223805 22712
[2026-03-11 11:53:35] 2026-03-11 10:44:42,444 [wrapper] Test setup, not cleaning
[2026-03-11 11:53:35] 2026-03-11 10:44:42,448 [wrapper] apfmon messages muted
[2026-03-11 11:53:35] 2026-03-11 10:44:42,451 [wrapper] ==== wrapper stdout END ====
[2026-03-11 11:53:35] 2026-03-11 10:44:42,454 [wrapper] ==== wrapper stderr END ====
[2026-03-11 11:53:35]  *** Error codes and diagnostics ***
[2026-03-11 11:53:35]     "exeErrorCode": 0,
[2026-03-11 11:53:35]     "exeErrorDiag": "",
[2026-03-11 11:53:35]     "pilotErrorCode": 0,
[2026-03-11 11:53:35]     "pilotErrorDiag": "",
[2026-03-11 11:53:35]  *** Listing of results directory ***
[2026-03-11 11:53:35] total 611456
[2026-03-11 11:53:35] -rw-r--r--. 1 boinc boinc    584627 Mar  9 18:06 pilot3.tar.gz
[2026-03-11 11:53:35] -rwx------. 1 boinc boinc     36322 Mar  9 18:49 runpilot2-wrapper.sh
[2026-03-11 11:53:35] -rw-r--r--. 1 boinc boinc      5111 Mar  9 18:51 queuedata.json
[2026-03-11 11:53:35] -rw-r--r--. 1 boinc boinc       100 Mar 11 08:44 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-11 11:53:35] -rwxr-xr-x. 1 boinc boinc      7986 Mar 11 08:44 run_atlas
[2026-03-11 11:53:35] -rw-r--r--. 1 boinc boinc       105 Mar 11 08:44 job.xml
[2026-03-11 11:53:35] -rw-r--r--. 1 boinc boinc      6562 Mar 11 08:45 init_data.xml
[2026-03-11 11:53:35] -rw-r--r--. 2 boinc boinc 438904718 Mar 11 08:45 EVNT.46701403._001398.pool.root.1
[2026-03-11 11:53:35] -rw-r--r--. 2 boinc boinc     15845 Mar 11 08:45 start_atlas.sh
[2026-03-11 11:53:35] drwxrwx--x. 2 boinc boinc      4096 Mar 11 08:45 shared
[2026-03-11 11:53:35] -rw-r--r--. 2 boinc boinc    597960 Mar 11 08:45 input.tar.gz
[2026-03-11 11:53:35] -rw-r--r--. 1 boinc boinc         0 Mar 11 08:45 boinc_lockfile
[2026-03-11 11:53:35] -rw-r--r--. 1 boinc boinc      2563 Mar 11 08:45 pandaJob.out
[2026-03-11 11:53:35] -rw-------. 1 boinc boinc   1006644 Mar 11 08:45 agis_schedconf.cvmfs.json
[2026-03-11 11:53:35] -rw-------. 1 boinc boinc   1511578 Mar 11 08:45 agis_ddmendpoints.agis.ALL.json
[2026-03-11 11:53:35] -rw-------. 1 boinc boinc       452 Mar 11 08:45 workernode_map.json
[2026-03-11 11:53:35] drwx------. 5 boinc boinc      4096 Mar 11 08:45 pilot3
[2026-03-11 11:53:35] -rw-r--r--. 1 boinc boinc       530 Mar 11 11:43 boinc_task_state.xml
[2026-03-11 11:53:35] -rw-------. 1 boinc boinc 179515628 Mar 11 11:43 HITS.48955010._019940.pool.root.1
[2026-03-11 11:53:35] -rw-------. 1 boinc boinc        95 Mar 11 11:43 pilot_heartbeat.json
[2026-03-11 11:53:35] -rw-------. 1 boinc boinc      1033 Mar 11 11:43 memory_monitor_summary.json
[2026-03-11 11:53:35] -rw-------. 1 boinc boinc    378893 Mar 11 11:43 log.48955010._019940.job.log.tgz.1
[2026-03-11 11:53:35] -rw-------. 1 boinc boinc      6406 Mar 11 11:43 heartbeat.json
[2026-03-11 11:53:35] -rw-------. 1 boinc boinc      5427 Mar 11 11:44 pilotlog.txt
[2026-03-11 11:53:35] -rw-------. 1 boinc boinc   1504126 Mar 11 11:44 log.48955010._019940.job.log.1
[2026-03-11 11:53:35] -rw-------. 1 boinc boinc       357 Mar 11 11:44 output.list
[2026-03-11 11:53:35] -rw-r--r--. 1 boinc boinc       620 Mar 11 11:44 runtime_log
[2026-03-11 11:53:35] -rw-------. 1 boinc boinc   1904640 Mar 11 11:44 result.tar.gz
[2026-03-11 11:53:35] -rw-r--r--. 1 boinc boinc      9205 Mar 11 11:44 runtime_log.err
[2026-03-11 11:53:35] -rw-------. 1 boinc boinc       664 Mar 11 11:44 PCCODmbutJ9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmQMdLDmBil27n.diag
[2026-03-11 11:53:35] -rw-r--r--. 1 boinc boinc        27 Mar 11 11:53 wrapper_checkpoint.txt
[2026-03-11 11:53:35] -rw-r--r--. 1 boinc boinc      8192 Mar 11 11:53 boinc_mmap_file
[2026-03-11 11:53:35] -rw-r--r--. 1 boinc boinc     20824 Mar 11 11:53 stderr.txt
[2026-03-11 11:53:35] HITS file was successfully produced:
[2026-03-11 11:53:35] -rw-------. 1 boinc boinc 179515628 Mar 11 11:43 shared/HITS.pool.root.1
[2026-03-11 11:53:35]  *** Contents of shared directory: ***
[2026-03-11 11:53:35] total 606400
[2026-03-11 11:53:35] -rw-r--r--. 2 boinc boinc 438904718 Mar 11 08:45 ATLAS.root_0
[2026-03-11 11:53:35] -rw-r--r--. 2 boinc boinc     15845 Mar 11 08:45 start_atlas.sh
[2026-03-11 11:53:35] -rw-r--r--. 2 boinc boinc    597960 Mar 11 08:45 input.tar.gz
[2026-03-11 11:53:35] -rw-------. 1 boinc boinc 179515628 Mar 11 11:43 HITS.pool.root.1
[2026-03-11 11:53:35] -rw-------. 1 boinc boinc   1904640 Mar 11 11:44 result.tar.gz
11:53:36 (18651): run_atlas exited; CPU time 40640.081717
11:53:36 (18651): called boinc_finish(0)

</stderr_txt>
]]>

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