Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
17:38:53 (3383414): wrapper (7.7.26015): starting
17:38:53 (3383414): wrapper: running run_atlas (--nthreads 4)
[2026-03-09 17:38:53] Arguments: --nthreads 4
[2026-03-09 17:38:53] Threads: 4
[2026-03-09 17:38:53] Checking for CVMFS
[2026-03-09 17:38:53] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-09 17:38:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-09 17:38:53] Running cvmfs_config stat atlas.cern.ch
[2026-03-09 17:38:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-09 17:38:54] 2.13.3.0 1437033 5014 52696 157090 0 50 3298646 4096001 2748 130560 0 3767319 99.991 175549 972 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2026-03-09 17:38:54] CVMFS is ok
[2026-03-09 17:38:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-09 17:38:54] Small home clusters do not require a local http proxy but it is suggested if
[2026-03-09 17:38:54] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-03-09 17:38:54] Further information can be found at the LHC@home message board.
[2026-03-09 17:38:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-09 17:38:54] Checking for apptainer binary...
[2026-03-09 17:38:54] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-09 17:38:54] Running /usr/bin/apptainer --version
[2026-03-09 17:38:54] apptainer version 1.4.5
[2026-03-09 17:38:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-09 17:38:54] T5810-Ubuntu
[2026-03-09 17:38:54] apptainer works
[2026-03-09 17:38:54] Set ATHENA_PROC_NUMBER=4
[2026-03-09 17:38:54] Set ATHENA_CORE_NUMBER=4
[2026-03-09 17:38:54] Starting ATLAS job with PandaID=7041002698
[2026-03-09 17:38:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/whitlerd/Desktop/BOINC/slots/20 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-09 20:49:37]  *** The last 200 lines of the pilot log: ***
[2026-03-09 20:49:37] 2026-03-10 00:48:48,174 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-09 20:49:37] 2026-03-10 00:48:48,493 | INFO     | time since job start (11374s) is within the limit (349056.0s)
[2026-03-09 20:49:37] 2026-03-10 00:48:49,557 | INFO     | job 7041002698 has state=finished
[2026-03-09 20:49:37] 2026-03-10 00:48:49,557 | INFO     | preparing for final server update for job 7041002698 in state='finished'
[2026-03-09 20:49:37] 2026-03-10 00:48:49,558 | INFO     | reading metadata from: /home/whitlerd/Desktop/BOINC/slots/20/PanDA_Pilot-7041002698/jobReport.json
[2026-03-09 20:49:37] 2026-03-10 00:48:49,560 | INFO     | added worker_node to metadata from /home/whitlerd/Desktop/BOINC/slots/20/workernode_map.json
[2026-03-09 20:49:37] 2026-03-10 00:48:49,561 | INFO     | this job has now completed (state=finished)
[2026-03-09 20:49:37] 2026-03-10 00:48:49,561 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-09 20:49:37] 2026-03-10 00:48:49,561 | INFO     | log transfer has been attempted: DONE
[2026-03-09 20:49:37] 2026-03-10 00:48:49,561 | INFO     | job 7041002698 has finished - writing final server update
[2026-03-09 20:49:37] 2026-03-10 00:48:49,562 | INFO     | total number of processed events: 400 (read)
[2026-03-09 20:49:37] 2026-03-10 00:48:49,569 | INFO     | using path: /home/whitlerd/Desktop/BOINC/slots/20/PanDA_Pilot-7041002698/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 20:49:37] 2026-03-10 00:48:49,570 | INFO     | extracted standard info from prmon json
[2026-03-09 20:49:37] 2026-03-10 00:48:49,570 | INFO     | extracted standard memory fields from prmon json
[2026-03-09 20:49:37] 2026-03-10 00:48:49,570 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-09 20:49:37] 2026-03-10 00:48:49,571 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-09 20:49:37] 2026-03-10 00:48:49,571 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-09 20:49:37] 2026-03-10 00:48:49,575 | INFO     | fitting pss+swap vs Time
[2026-03-09 20:49:37] 2026-03-10 00:48:49,575 | INFO     | sum of square deviations: 1995283922.5
[2026-03-09 20:49:37] 2026-03-10 00:48:49,576 | INFO     | sum of deviations: -36523354354.0
[2026-03-09 20:49:37] 2026-03-10 00:48:49,577 | INFO     | mean x: 1773098019.5
[2026-03-09 20:49:37] 2026-03-10 00:48:49,577 | INFO     | mean y: 2366557.1612903224
[2026-03-09 20:49:37] 2026-03-10 00:48:49,577 | INFO     | intersect: 32458643350.808487
[2026-03-09 20:49:37] 2026-03-10 00:48:49,577 | INFO     | chi2: 1.7353560666489574
[2026-03-09 20:49:37] 2026-03-10 00:48:49,578 | INFO     | sum of square deviations: 1838657730.0
[2026-03-09 20:49:37] 2026-03-10 00:48:49,579 | INFO     | sum of deviations: -35075175985.0
[2026-03-09 20:49:37] 2026-03-10 00:48:49,579 | INFO     | mean x: 1773097867.0
[2026-03-09 20:49:37] 2026-03-10 00:48:49,579 | INFO     | mean y: 2367967.9281767956
[2026-03-09 20:49:37] 2026-03-10 00:48:49,579 | INFO     | intersect: 33826890449.14774
[2026-03-09 20:49:37] 2026-03-10 00:48:49,580 | INFO     | chi2: 1.7294002368106118
[2026-03-09 20:49:37] 2026-03-10 00:48:49,580 | INFO     | current chi2=1.7294002368106118 (change=0.3432050604949609 %)
[2026-03-09 20:49:37] 2026-03-10 00:48:49,580 | INFO     | right removable region: 180
[2026-03-09 20:49:37] 2026-03-10 00:48:49,580 | INFO     | sum of square deviations: 1838657730.0
[2026-03-09 20:49:37] 2026-03-10 00:48:49,582 | INFO     | sum of deviations: -57345152487.0
[2026-03-09 20:49:37] 2026-03-10 00:48:49,582 | INFO     | mean x: 1773098172.0
[2026-03-09 20:49:37] 2026-03-10 00:48:49,582 | INFO     | mean y: 2386470.546961326
[2026-03-09 20:49:37] 2026-03-10 00:48:49,582 | INFO     | intersect: 55302828411.83254
[2026-03-09 20:49:37] 2026-03-10 00:48:49,583 | INFO     | chi2: 0.3945923644397366
[2026-03-09 20:49:37] 2026-03-10 00:48:49,583 | INFO     | current chi2=0.3945923644397366 (change=77.26159074651979 %)
[2026-03-09 20:49:37] 2026-03-10 00:48:49,583 | INFO     | sum of square deviations: 1690450300.0
[2026-03-09 20:49:37] 2026-03-10 00:48:49,584 | INFO     | sum of deviations: -51419315142.5
[2026-03-09 20:49:37] 2026-03-10 00:48:49,584 | INFO     | mean x: 1773098324.5
[2026-03-09 20:49:37] 2026-03-10 00:48:49,585 | INFO     | mean y: 2380347.403409091
[2026-03-09 20:49:37] 2026-03-10 00:48:49,585 | INFO     | intersect: 53935643884.405495
[2026-03-09 20:49:37] 2026-03-10 00:48:49,585 | INFO     | chi2: 0.38963150720967393
[2026-03-09 20:49:37] 2026-03-10 00:48:49,585 | INFO     | current chi2=0.38963150720967393 (change=1.2572106500606943 %)
[2026-03-09 20:49:37] 2026-03-10 00:48:49,585 | INFO     | left removable region: 20
[2026-03-09 20:49:37] 2026-03-10 00:48:49,586 | INFO     | sum of square deviations: 1270051720.0
[2026-03-09 20:49:37] 2026-03-10 00:48:49,586 | INFO     | sum of deviations: -32749982926.000004
[2026-03-09 20:49:37] 2026-03-10 00:48:49,587 | INFO     | mean x: 1773098446.5
[2026-03-09 20:49:37] 2026-03-10 00:48:49,587 | INFO     | mean y: 2362642.4125
[2026-03-09 20:49:37] 2026-03-10 00:48:49,587 | INFO     | intersect: 45724078486.38784
[2026-03-09 20:49:37] 2026-03-10 00:48:49,587 | INFO     | chi2: 0.3291226891768225
[2026-03-09 20:49:37] 2026-03-10 00:48:49,587 | INFO     | current memory leak: -25.79 B/s (using 160 data points, chi2=0.33)
[2026-03-09 20:49:37] 2026-03-10 00:48:49,588 | INFO     | could have reported an average CPU frequency of 2479 MHz (10 samples)
[2026-03-09 20:49:37] 2026-03-10 00:48:49,588 | INFO     | ..............................
[2026-03-09 20:49:37] 2026-03-10 00:48:49,588 | INFO     | . Timing measurements:
[2026-03-09 20:49:37] 2026-03-10 00:48:49,588 | INFO     | . get job = 0 s
[2026-03-09 20:49:37] 2026-03-10 00:48:49,588 | INFO     | . initial setup = 7 s
[2026-03-09 20:49:37] 2026-03-10 00:48:49,588 | INFO     | . payload setup = 6 s
[2026-03-09 20:49:37] 2026-03-10 00:48:49,589 | INFO     | . stage-in = 0 s
[2026-03-09 20:49:37] 2026-03-10 00:48:49,589 | INFO     | . payload execution = 11348 s
[2026-03-09 20:49:37] 2026-03-10 00:48:49,589 | INFO     | . stage-out = 2 s
[2026-03-09 20:49:37] 2026-03-10 00:48:49,589 | INFO     | . log creation = 0 s
[2026-03-09 20:49:37] 2026-03-10 00:48:49,589 | INFO     | ..............................
[2026-03-09 20:49:37] 2026-03-10 00:48:49,702 | INFO     | 
[2026-03-09 20:49:37] 2026-03-10 00:48:49,702 | INFO     | job summary report
[2026-03-09 20:49:37] 2026-03-10 00:48:49,702 | INFO     | --------------------------------------------------
[2026-03-09 20:49:37] 2026-03-10 00:48:49,702 | INFO     | PanDA job id: 7041002698
[2026-03-09 20:49:37] 2026-03-10 00:48:49,702 | INFO     | task id: 48955010
[2026-03-09 20:49:37] 2026-03-10 00:48:49,702 | INFO     | errors: (none)
[2026-03-09 20:49:37] 2026-03-10 00:48:49,702 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-09 20:49:37] 2026-03-10 00:48:49,702 | INFO     | pilot state: finished 
[2026-03-09 20:49:37] 2026-03-10 00:48:49,703 | INFO     | transexitcode: 0
[2026-03-09 20:49:37] 2026-03-10 00:48:49,703 | INFO     | exeerrorcode: 0
[2026-03-09 20:49:37] 2026-03-10 00:48:49,703 | INFO     | exeerrordiag: 
[2026-03-09 20:49:37] 2026-03-10 00:48:49,703 | INFO     | exitcode: 0
[2026-03-09 20:49:37] 2026-03-10 00:48:49,703 | INFO     | exitmsg: OK
[2026-03-09 20:49:37] 2026-03-10 00:48:49,703 | INFO     | cpuconsumptiontime: 43693 s
[2026-03-09 20:49:37] 2026-03-10 00:48:49,703 | INFO     | nevents: 400
[2026-03-09 20:49:37] 2026-03-10 00:48:49,703 | INFO     | neventsw: 0
[2026-03-09 20:49:37] 2026-03-10 00:48:49,703 | INFO     | pid: 3392365
[2026-03-09 20:49:37] 2026-03-10 00:48:49,703 | INFO     | pgrp: 3392365
[2026-03-09 20:49:37] 2026-03-10 00:48:49,704 | INFO     | corecount: 4
[2026-03-09 20:49:37] 2026-03-10 00:48:49,704 | INFO     | event service: False
[2026-03-09 20:49:37] 2026-03-10 00:48:49,704 | INFO     | sizes: {0: 2279986, 1: 2280192, 11: 2280220, 11358: 2309461, 11361: 2318489, 11362: 2318545, 11363: 2318867}
[2026-03-09 20:49:37] 2026-03-10 00:48:49,704 | INFO     | --------------------------------------------------
[2026-03-09 20:49:37] 2026-03-10 00:48:49,704 | INFO     | 
[2026-03-09 20:49:37] 2026-03-10 00:48:49,704 | INFO     | executing command: ls -lF /home/whitlerd/Desktop/BOINC/slots/20
[2026-03-09 20:49:37] 2026-03-10 00:48:49,727 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-09 20:49:37] 2026-03-10 00:48:49,727 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-09 20:49:37] 2026-03-10 00:48:49,727 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-09 20:49:37] 2026-03-10 00:48:49,728 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-09 20:49:37] 2026-03-10 00:48:49,728 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-09 20:49:37] 2026-03-10 00:48:49,728 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-09 20:49:37] 2026-03-10 00:48:49,728 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-09 20:49:37] 2026-03-10 00:48:49,728 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-09 20:49:37] 2026-03-10 00:48:49,728 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-09 20:49:37] 2026-03-10 00:48:49,728 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-09 20:49:37] 2026-03-10 00:48:49,728 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-09 20:49:37] 2026-03-10 00:48:49,728 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-09 20:49:37] 2026-03-10 00:48:49,729 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-09 20:49:37] 2026-03-10 00:48:49,729 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-09 20:49:37] 2026-03-10 00:48:49,729 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-09 20:49:37] 2026-03-10 00:48:49,729 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-09 20:49:37] 2026-03-10 00:48:49,729 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-09 20:49:37] 2026-03-10 00:48:49,729 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-09 20:49:37] 2026-03-10 00:48:49,729 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-09 20:49:37] 2026-03-10 00:48:49,729 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-09 20:49:37] 2026-03-10 00:48:49,730 | INFO     | job 7041002698 has completed (purged errors)
[2026-03-09 20:49:37] 2026-03-10 00:48:49,730 | INFO     | overall cleanup function is called
[2026-03-09 20:49:37] 2026-03-10 00:48:50,738 | INFO     | --- collectZombieJob: --- 10, [3392365]
[2026-03-09 20:49:37] 2026-03-10 00:48:50,738 | INFO     | zombie collector waiting for pid 3392365
[2026-03-09 20:49:37] 2026-03-10 00:48:50,738 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-09 20:49:37] 2026-03-10 00:48:50,738 | INFO     | collected zombie processes
[2026-03-09 20:49:37] 2026-03-10 00:48:50,738 | INFO     | will attempt to kill all subprocesses of pid=3392365
[2026-03-09 20:49:37] 2026-03-10 00:48:50,988 | INFO     | process IDs to be killed: [3392365] (in reverse order)
[2026-03-09 20:49:37] 2026-03-10 00:48:51,049 | WARNING  | found no corresponding commands to process id(s)
[2026-03-09 20:49:37] 2026-03-10 00:48:51,049 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-09 20:49:37] 2026-03-10 00:48:51,055 | INFO     | did not find any defunct processes belonging to 3392365
[2026-03-09 20:49:37] 2026-03-10 00:48:51,062 | INFO     | did not find any defunct processes belonging to 3392365
[2026-03-09 20:49:37] 2026-03-10 00:48:51,062 | INFO     | ready for new job
[2026-03-09 20:49:37] 2026-03-10 00:48:51,062 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-09 20:49:37] 2026-03-10 00:48:51,064 | INFO     | **************************************
[2026-03-09 20:49:37] 2026-03-10 00:48:51,064 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-09 20:49:37] 2026-03-10 00:48:51,064 | INFO     | **************************************
[2026-03-09 20:49:37] 2026-03-10 00:48:51,064 | INFO     | 
[2026-03-09 20:49:37] 2026-03-10 00:48:51,067 | INFO     | architecture information:
[2026-03-09 20:49:37] 2026-03-10 00:48:51,068 | INFO     | executing command: cat /etc/os-release
[2026-03-09 20:49:37] 2026-03-10 00:48:51,089 | INFO     | cat /etc/os-release:
[2026-03-09 20:49:37] NAME="CentOS Linux"
[2026-03-09 20:49:37] VERSION="7 (Core)"
[2026-03-09 20:49:37] ID="centos"
[2026-03-09 20:49:37] ID_LIKE="rhel fedora"
[2026-03-09 20:49:37] VERSION_ID="7"
[2026-03-09 20:49:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-09 20:49:37] ANSI_COLOR="0;31"
[2026-03-09 20:49:37] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-09 20:49:37] HOME_URL="https://www.centos.org/"
[2026-03-09 20:49:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-09 20:49:37] 
[2026-03-09 20:49:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-09 20:49:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-09 20:49:37] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-09 20:49:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-09 20:49:37] 
[2026-03-09 20:49:37] 2026-03-10 00:48:51,089 | INFO     | **************************************
[2026-03-09 20:49:37] 2026-03-10 00:48:51,592 | INFO     | executing command: df -mP /home/whitlerd/Desktop/BOINC/slots/20
[2026-03-09 20:49:37] 2026-03-10 00:48:51,616 | INFO     | sufficient remaining disk space (405006188544 B)
[2026-03-09 20:49:37] 2026-03-10 00:48:51,617 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-09 20:49:37] 2026-03-10 00:48:51,617 | INFO     | current server update state: UPDATING_FINAL
[2026-03-09 20:49:37] 2026-03-10 00:48:51,617 | INFO     | update_server=False
[2026-03-09 20:49:37] 2026-03-10 00:48:51,617 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-09 20:49:37] 2026-03-10 00:48:51,617 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-09 20:49:37] 2026-03-10 00:48:51,617 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-09 20:49:37] 2026-03-10 00:48:51,618 | INFO     | aborting loop
[2026-03-09 20:49:37] 2026-03-10 00:48:52,034 | INFO     | all data control threads have been joined
[2026-03-09 20:49:37] 2026-03-10 00:48:52,622 | INFO     | [job] retrieve thread has finished
[2026-03-09 20:49:37] 2026-03-10 00:48:52,622 | INFO     | [job] queue monitor thread has finished
[2026-03-09 20:49:37] 2026-03-10 00:48:52,623 | INFO     | [job] job monitor thread has finished
[2026-03-09 20:49:37] 2026-03-10 00:48:52,775 | INFO     | all payload control threads have been joined
[2026-03-09 20:49:37] 2026-03-10 00:48:52,892 | INFO     | [payload] execute_payloads thread has finished
[2026-03-09 20:49:37] 2026-03-10 00:48:52,953 | INFO     | [data] copytool_in thread has finished
[2026-03-09 20:49:37] 2026-03-10 00:48:52,988 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-09 20:49:37] 2026-03-10 00:48:53,039 | INFO     | [data] control thread has finished
[2026-03-09 20:49:37] 2026-03-10 00:48:53,074 | INFO     | all job control threads have been joined
[2026-03-09 20:49:37] 2026-03-10 00:48:53,504 | INFO     | [payload] validate_post thread has finished
[2026-03-09 20:49:37] 2026-03-10 00:48:53,655 | INFO     | [job] validate thread has finished
[2026-03-09 20:49:37] 2026-03-10 00:48:53,780 | INFO     | [payload] control thread has finished
[2026-03-09 20:49:37] 2026-03-10 00:48:53,869 | INFO     | [job] create_data_payload thread has finished
[2026-03-09 20:49:37] 2026-03-10 00:48:53,990 | INFO     | [payload] failed_post thread has finished
[2026-03-09 20:49:37] 2026-03-10 00:48:53,994 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-09 20:49:37] 2026-03-10 00:48:54,079 | INFO     | [job] control thread has finished
[2026-03-09 20:49:37] 2026-03-10 00:48:54,121 | INFO     | [payload] validate_pre thread has finished
[2026-03-09 20:49:37] 2026-03-10 00:48:54,294 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-09 20:49:37] 2026-03-10 00:48:54,994 | INFO     | [data] copytool_out thread has finished
[2026-03-09 20:49:37] 2026-03-10 00:48:58,299 | INFO     | [data] queue_monitor thread has finished
[2026-03-09 20:49:37] 2026-03-10 00:49:21,875 | INFO     | PID=3387654 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-09 20:49:37] 2026-03-10 00:49:21,875 | INFO     | .. there are 4 such processes running
[2026-03-09 20:49:37] 2026-03-10 00:49:21,876 | INFO     | found 0 job(s) in 20 queues
[2026-03-09 20:49:37] 2026-03-10 00:49:21,876 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-09 20:49:37] 2026-03-10 00:49:21,876 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-09 20:49:37] 2026-03-10 00:49:32,462 | INFO     | [monitor] cgroup control has ended
[2026-03-09 20:49:37] 2026-03-10 00:49:32,546 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 131784688252736)>', '<ExcThread(monitor, started 131784201193216)>']
[2026-03-09 20:49:37] 2026-03-10 00:49:32,916 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-09 20:49:37] 2026-03-10 00:49:32,916 | INFO     | [monitor] control thread has ended
[2026-03-09 20:49:37] 2026-03-10 00:49:37,556 | INFO     | all workflow threads have been joined
[2026-03-09 20:49:37] 2026-03-10 00:49:37,557 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-09 20:49:37] 2026-03-10 00:49:37,557 | INFO     | traces error code: 0
[2026-03-09 20:49:37] 2026-03-10 00:49:37,558 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-09 20:49:37] 2026-03-10 00:49:37,671 [wrapper] ==== pilot stdout END ====
[2026-03-09 20:49:37] 2026-03-10 00:49:37,673 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-09 20:49:37] 2026-03-10 00:49:37,677 [wrapper] pilotpid: 3387654
[2026-03-09 20:49:37] 2026-03-10 00:49:37,680 [wrapper] Pilot exit status: 0
[2026-03-09 20:49:37] 2026-03-10 00:49:37,689 [wrapper] pandaids: 7041002698
[2026-03-09 20:49:37] 2026-03-10 00:49:37,734 [wrapper] cleanup supervisor_pilot 3467283 3387655
[2026-03-09 20:49:37] 2026-03-10 00:49:37,736 [wrapper] Test setup, not cleaning
[2026-03-09 20:49:37] 2026-03-10 00:49:37,742 [wrapper] apfmon messages muted
[2026-03-09 20:49:37] 2026-03-10 00:49:37,745 [wrapper] ==== wrapper stdout END ====
[2026-03-09 20:49:37] 2026-03-10 00:49:37,749 [wrapper] ==== wrapper stderr END ====
[2026-03-09 20:49:37]  *** Error codes and diagnostics ***
[2026-03-09 20:49:37]     "exeErrorCode": 0,
[2026-03-09 20:49:37]     "exeErrorDiag": "",
[2026-03-09 20:49:37]     "pilotErrorCode": 0,
[2026-03-09 20:49:37]     "pilotErrorDiag": "",
[2026-03-09 20:49:37]  *** Listing of results directory ***
[2026-03-09 20:49:37] total 610804
[2026-03-09 20:49:37] -rw-r--r-- 1 whitlerd whitlerd    584627 Mar  9 13:06 pilot3.tar.gz
[2026-03-09 20:49:37] -rwx------ 1 whitlerd whitlerd     36322 Mar  9 13:49 runpilot2-wrapper.sh
[2026-03-09 20:49:37] -rw-r--r-- 1 whitlerd whitlerd      5111 Mar  9 13:51 queuedata.json
[2026-03-09 20:49:37] -rw-rw-r-- 1 whitlerd whitlerd       100 Mar  9 17:38 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-09 20:49:37] -rwxr-xr-x 1 whitlerd whitlerd      7986 Mar  9 17:38 run_atlas
[2026-03-09 20:49:37] -rw-rw-r-- 1 whitlerd whitlerd       105 Mar  9 17:38 job.xml
[2026-03-09 20:49:37] -rw-r--r-- 2 whitlerd whitlerd 437061295 Mar  9 17:38 EVNT.46701403._001393.pool.root.1
[2026-03-09 20:49:37] -rw-r--r-- 2 whitlerd whitlerd     15845 Mar  9 17:38 start_atlas.sh
[2026-03-09 20:49:37] drwxrwx--x 2 whitlerd whitlerd      4096 Mar  9 17:38 shared
[2026-03-09 20:49:37] -rw-r--r-- 2 whitlerd whitlerd    597960 Mar  9 17:38 input.tar.gz
[2026-03-09 20:49:37] -rw-rw-r-- 1 whitlerd whitlerd         0 Mar  9 17:38 boinc_setup_complete
[2026-03-09 20:49:37] -rw-rw-r-- 1 whitlerd whitlerd      9087 Mar  9 17:38 init_data.xml
[2026-03-09 20:49:37] -rw-rw-r-- 1 whitlerd whitlerd         0 Mar  9 17:38 boinc_lockfile
[2026-03-09 20:49:37] -rw-rw-r-- 1 whitlerd whitlerd      2562 Mar  9 17:38 pandaJob.out
[2026-03-09 20:49:37] -rw------- 1 whitlerd whitlerd   1002738 Mar  9 17:39 agis_schedconf.cvmfs.json
[2026-03-09 20:49:37] -rw------- 1 whitlerd whitlerd       427 Mar  9 17:39 workernode_map.json
[2026-03-09 20:49:37] drwx------ 5 whitlerd whitlerd      4096 Mar  9 17:39 pilot3
[2026-03-09 20:49:37] -rw------- 1 whitlerd whitlerd 180424680 Mar  9 20:48 HITS.48955010._019678.pool.root.1
[2026-03-09 20:49:37] -rw-rw-r-- 1 whitlerd whitlerd       531 Mar  9 20:48 boinc_task_state.xml
[2026-03-09 20:49:37] -rw------- 1 whitlerd whitlerd      1029 Mar  9 20:48 memory_monitor_summary.json
[2026-03-09 20:49:37] -rw------- 1 whitlerd whitlerd   1511578 Mar  9 20:48 agis_ddmendpoints.agis.ALL.json
[2026-03-09 20:49:37] -rw------- 1 whitlerd whitlerd    377400 Mar  9 20:48 log.48955010._019678.job.log.tgz.1
[2026-03-09 20:49:37] -rw------- 1 whitlerd whitlerd      6339 Mar  9 20:48 heartbeat.json
[2026-03-09 20:49:37] -rw------- 1 whitlerd whitlerd        95 Mar  9 20:49 pilot_heartbeat.json
[2026-03-09 20:49:37] -rw-rw-r-- 1 whitlerd whitlerd        28 Mar  9 20:49 wrapper_checkpoint.txt
[2026-03-09 20:49:37] -rw-rw-r-- 1 whitlerd whitlerd      8192 Mar  9 20:49 boinc_mmap_file
[2026-03-09 20:49:37] -rw------- 1 whitlerd whitlerd      4835 Mar  9 20:49 pilotlog.txt
[2026-03-09 20:49:37] -rw------- 1 whitlerd whitlerd   1641416 Mar  9 20:49 log.48955010._019678.job.log.1
[2026-03-09 20:49:37] -rw------- 1 whitlerd whitlerd       357 Mar  9 20:49 output.list
[2026-03-09 20:49:37] -rw-rw-r-- 1 whitlerd whitlerd       620 Mar  9 20:49 runtime_log
[2026-03-09 20:49:37] -rw------- 1 whitlerd whitlerd   2037760 Mar  9 20:49 result.tar.gz
[2026-03-09 20:49:37] -rw-rw-r-- 1 whitlerd whitlerd      9036 Mar  9 20:49 runtime_log.err
[2026-03-09 20:49:37] -rw------- 1 whitlerd whitlerd       649 Mar  9 20:49 Q9rNDmTutJ9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmKLdLDmttdmen.diag
[2026-03-09 20:49:37] -rw-rw-r-- 1 whitlerd whitlerd     21407 Mar  9 20:49 stderr.txt
[2026-03-09 20:49:37] HITS file was successfully produced:
[2026-03-09 20:49:37] -rw------- 1 whitlerd whitlerd 180424680 Mar  9 20:48 shared/HITS.pool.root.1
[2026-03-09 20:49:37]  *** Contents of shared directory: ***
[2026-03-09 20:49:37] total 605616
[2026-03-09 20:49:37] -rw-r--r-- 2 whitlerd whitlerd 437061295 Mar  9 17:38 ATLAS.root_0
[2026-03-09 20:49:37] -rw-r--r-- 2 whitlerd whitlerd     15845 Mar  9 17:38 start_atlas.sh
[2026-03-09 20:49:37] -rw-r--r-- 2 whitlerd whitlerd    597960 Mar  9 17:38 input.tar.gz
[2026-03-09 20:49:37] -rw------- 1 whitlerd whitlerd 180424680 Mar  9 20:48 HITS.pool.root.1
[2026-03-09 20:49:37] -rw------- 1 whitlerd whitlerd   2037760 Mar  9 20:49 result.tar.gz
20:49:39 (3383414): run_atlas exited; CPU time 44051.699571
20:49:39 (3383414): called boinc_finish(0)

</stderr_txt>
]]>

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