Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:24:16 (1400255): wrapper (7.7.26015): starting
05:24:16 (1400255): wrapper: running run_atlas (--nthreads 4)
[2026-03-10 05:24:16] Arguments: --nthreads 4
[2026-03-10 05:24:16] Threads: 4
[2026-03-10 05:24:16] Checking for CVMFS
[2026-03-10 05:24:16] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-10 05:24:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-10 05:24:17] Running cvmfs_config stat atlas.cern.ch
[2026-03-10 05:24:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-10 05:24:17] 2.9.2.0 7007 8306 101884 157102 0 50 29878563 36864000 0 130560 0 3872226 99.986 304044 9790 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-10 05:24:17] CVMFS is ok
[2026-03-10 05:24:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-10 05:24:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-10 05:24:17] Further information can be found at the LHC@home message board.
[2026-03-10 05:24:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-10 05:24:17] Checking for apptainer binary...
[2026-03-10 05:24:17] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-10 05:24:17] Running /usr/bin/apptainer --version
[2026-03-10 05:24:17] apptainer version 1.4.1-1.1
[2026-03-10 05:24:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-10 05:24:17] thA332a
[2026-03-10 05:24:17] apptainer works
[2026-03-10 05:24:17] Set ATHENA_PROC_NUMBER=4
[2026-03-10 05:24:17] Set ATHENA_CORE_NUMBER=4
[2026-03-10 05:24:17] Starting ATLAS job with PandaID=7047365802
[2026-03-10 05:24:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-10 06:46:48]  *** The last 200 lines of the pilot log: ***
[2026-03-10 06:46:48] 2026-03-10 05:46:15,545 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-10 06:46:48] 2026-03-10 05:46:15,545 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-10 06:46:48] 2026-03-10 05:46:15,545 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-10 06:46:48] 2026-03-10 05:46:15,545 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-10 06:46:48] 2026-03-10 05:46:15,545 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-10 06:46:48] 2026-03-10 05:46:15,545 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-10 06:46:48] 2026-03-10 05:46:15,545 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-10 06:46:48] 2026-03-10 05:46:15,545 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-10 06:46:48] 2026-03-10 05:46:15,545 | INFO     | job 7047365802 has completed (purged errors)
[2026-03-10 06:46:48] 2026-03-10 05:46:15,545 | INFO     | overall cleanup function is called
[2026-03-10 06:46:48] 2026-03-10 05:46:16,551 | INFO     | --- collectZombieJob: --- 10, [1408897]
[2026-03-10 06:46:48] 2026-03-10 05:46:16,552 | INFO     | zombie collector waiting for pid 1408897
[2026-03-10 06:46:48] 2026-03-10 05:46:16,552 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-10 06:46:48] 2026-03-10 05:46:16,552 | INFO     | collected zombie processes
[2026-03-10 06:46:48] 2026-03-10 05:46:16,552 | INFO     | will attempt to kill all subprocesses of pid=1408897
[2026-03-10 06:46:48] 2026-03-10 05:46:16,593 | INFO     | process IDs to be killed: [1408897] (in reverse order)
[2026-03-10 06:46:48] 2026-03-10 05:46:16,625 | WARNING  | found no corresponding commands to process id(s)
[2026-03-10 06:46:48] 2026-03-10 05:46:16,625 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-10 06:46:48] 2026-03-10 05:46:16,627 | INFO     | did not find any defunct processes belonging to 1408897
[2026-03-10 06:46:48] 2026-03-10 05:46:16,628 | INFO     | did not find any defunct processes belonging to 1408897
[2026-03-10 06:46:48] 2026-03-10 05:46:16,628 | INFO     | ready for new job
[2026-03-10 06:46:48] 2026-03-10 05:46:16,628 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-10 06:46:48] 2026-03-10 05:46:16,629 | INFO     | **************************************
[2026-03-10 06:46:48] 2026-03-10 05:46:16,629 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-10 06:46:48] 2026-03-10 05:46:16,629 | INFO     | **************************************
[2026-03-10 06:46:48] 2026-03-10 05:46:16,629 | INFO     | 
[2026-03-10 06:46:48] 2026-03-10 05:46:16,629 | INFO     | architecture information:
[2026-03-10 06:46:48] 2026-03-10 05:46:16,629 | INFO     | executing command: cat /etc/os-release
[2026-03-10 06:46:48] 2026-03-10 05:46:16,643 | INFO     | cat /etc/os-release:
[2026-03-10 06:46:48] NAME="CentOS Linux"
[2026-03-10 06:46:48] VERSION="7 (Core)"
[2026-03-10 06:46:48] ID="centos"
[2026-03-10 06:46:48] ID_LIKE="rhel fedora"
[2026-03-10 06:46:48] VERSION_ID="7"
[2026-03-10 06:46:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-10 06:46:48] ANSI_COLOR="0;31"
[2026-03-10 06:46:48] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-10 06:46:48] HOME_URL="https://www.centos.org/"
[2026-03-10 06:46:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-10 06:46:48] 
[2026-03-10 06:46:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-10 06:46:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-10 06:46:48] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-10 06:46:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-10 06:46:48] 
[2026-03-10 06:46:48] 2026-03-10 05:46:16,644 | INFO     | **************************************
[2026-03-10 06:46:48] 2026-03-10 05:46:17,147 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-10 06:46:48] 2026-03-10 05:46:17,165 | INFO     | sufficient remaining disk space (328313339904 B)
[2026-03-10 06:46:48] 2026-03-10 05:46:17,165 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-10 06:46:48] 2026-03-10 05:46:17,165 | INFO     | current server update state: UPDATING_FINAL
[2026-03-10 06:46:48] 2026-03-10 05:46:17,165 | INFO     | update_server=False
[2026-03-10 06:46:48] 2026-03-10 05:46:17,165 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-10 06:46:48] 2026-03-10 05:46:17,166 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-10 06:46:48] 2026-03-10 05:46:17,166 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-10 06:46:48] 2026-03-10 05:46:17,166 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-10 06:46:48] 2026-03-10 05:46:17,166 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-10 06:46:48] 2026-03-10 05:46:17,166 | INFO     | aborting loop
[2026-03-10 06:46:48] 2026-03-10 05:46:17,357 | INFO     | all data control threads have been joined
[2026-03-10 06:46:48] 2026-03-10 05:46:18,166 | INFO     | [job] retrieve thread has finished
[2026-03-10 06:46:48] 2026-03-10 05:46:18,171 | INFO     | [job] queue monitor thread has finished
[2026-03-10 06:46:48] 2026-03-10 05:46:18,172 | INFO     | [job] job monitor thread has finished
[2026-03-10 06:46:48] 2026-03-10 05:46:18,202 | INFO     | all payload control threads have been joined
[2026-03-10 06:46:48] 2026-03-10 05:46:18,225 | INFO     | [job] create_data_payload thread has finished
[2026-03-10 06:46:48] 2026-03-10 05:46:18,283 | INFO     | [payload] validate_pre thread has finished
[2026-03-10 06:46:48] 2026-03-10 05:46:18,363 | INFO     | [data] control thread has finished
[2026-03-10 06:46:48] 2026-03-10 05:46:18,363 | INFO     | all job control threads have been joined
[2026-03-10 06:46:48] 2026-03-10 05:46:18,410 | INFO     | [data] copytool_in thread has finished
[2026-03-10 06:46:48] 2026-03-10 05:46:18,770 | INFO     | [payload] failed_post thread has finished
[2026-03-10 06:46:48] 2026-03-10 05:46:18,798 | INFO     | [payload] execute_payloads thread has finished
[2026-03-10 06:46:48] 2026-03-10 05:46:19,172 | INFO     | [data] copytool_out thread has finished
[2026-03-10 06:46:48] 2026-03-10 05:46:19,208 | INFO     | [payload] control thread has finished
[2026-03-10 06:46:48] 2026-03-10 05:46:19,306 | INFO     | [payload] validate_post thread has finished
[2026-03-10 06:46:48] 2026-03-10 05:46:19,369 | INFO     | [job] control thread has finished
[2026-03-10 06:46:48] 2026-03-10 05:46:19,585 | INFO     | [job] validate thread has finished
[2026-03-10 06:46:48] 2026-03-10 05:46:21,173 | INFO     | [data] queue_monitor thread has finished
[2026-03-10 06:46:48] 2026-03-10 05:46:27,208 | INFO     | job.realtimelogging is not enabled
[2026-03-10 06:46:48] 2026-03-10 05:46:28,214 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-10 06:46:48] 2026-03-10 05:46:34,926 | INFO     | [monitor] cgroup control has ended
[2026-03-10 06:46:48] 2026-03-10 05:46:36,315 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140171924809536)>', '<ExcThread(monitor, started 140171148257024)>']
[2026-03-10 06:46:48] 2026-03-10 05:46:41,340 | INFO     | all workflow threads have been joined
[2026-03-10 06:46:48] 2026-03-10 05:46:41,341 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-10 06:46:48] 2026-03-10 05:46:41,341 | INFO     | traces error code: 0
[2026-03-10 06:46:48] 2026-03-10 05:46:41,341 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-10 06:46:48] 2026-03-10 05:46:47,994 | INFO     | PID=1404382 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-10 06:46:48] 2026-03-10 05:46:47,995 | INFO     | found 0 job(s) in 20 queues
[2026-03-10 06:46:48] 2026-03-10 05:46:47,995 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-10 06:46:48] 2026-03-10 05:46:47,995 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-10 06:46:48] 2026-03-10 05:46:47,995 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-10 06:46:48] 2026-03-10 05:46:47,995 | INFO     | [monitor] control thread has ended
[2026-03-10 06:46:48] 2026-03-10 05:46:48,068 [wrapper] ==== pilot stdout END ====
[2026-03-10 06:46:48] 2026-03-10 05:46:48,072 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-10 06:46:48] 2026-03-10 05:46:48,076 [wrapper] pilotpid: 1404382
[2026-03-10 06:46:48] 2026-03-10 05:46:48,080 [wrapper] Pilot exit status: 0
[2026-03-10 06:46:48] 2026-03-10 05:46:48,091 [wrapper] pandaids: 7047365802
[2026-03-10 06:46:48] 2026-03-10 05:46:48,111 [wrapper] cleanup supervisor_pilot 1414712 1404383
[2026-03-10 06:46:48] 2026-03-10 05:46:48,114 [wrapper] Test setup, not cleaning
[2026-03-10 06:46:48] 2026-03-10 05:46:48,118 [wrapper] apfmon messages muted
[2026-03-10 06:46:48] 2026-03-10 05:46:48,122 [wrapper] ==== wrapper stdout END ====
[2026-03-10 06:46:48] 2026-03-10 05:46:48,126 [wrapper] ==== wrapper stderr END ====
[2026-03-10 06:46:48]  *** Error codes and diagnostics ***
[2026-03-10 06:46:48]     "exeErrorCode": 0,
[2026-03-10 06:46:48]     "exeErrorDiag": "",
[2026-03-10 06:46:48]     "pilotErrorCode": 0,
[2026-03-10 06:46:48]     "pilotErrorDiag": "",
[2026-03-10 06:46:48]  *** Listing of results directory ***
[2026-03-10 06:46:48] total 403028
[2026-03-10 06:46:48] -rw-r--r-- 1 boinc boinc    584627 Mar  9 14:02 pilot3.tar.gz
[2026-03-10 06:46:48] -rwx------ 1 boinc boinc     36322 Mar  9 15:06 runpilot2-wrapper.sh
[2026-03-10 06:46:48] -rw-r--r-- 1 boinc boinc      5111 Mar  9 15:06 queuedata.json
[2026-03-10 06:46:48] -rw-r--r-- 1 boinc boinc       100 Mar 10 05:24 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-10 06:46:48] -rwxr-xr-x 1 boinc boinc      7986 Mar 10 05:24 run_atlas
[2026-03-10 06:46:48] -rw-r--r-- 1 boinc boinc       105 Mar 10 05:24 job.xml
[2026-03-10 06:46:48] -rw-r--r-- 2 boinc boinc 210574380 Mar 10 05:24 EVNT.48966985._000917.pool.root.1
[2026-03-10 06:46:48] -rw-r--r-- 2 boinc boinc    597964 Mar 10 05:24 input.tar.gz
[2026-03-10 06:46:48] -rw-r--r-- 2 boinc boinc     15845 Mar 10 05:24 start_atlas.sh
[2026-03-10 06:46:48] drwxrwx--x 2 boinc boinc      4096 Mar 10 05:24 shared
[2026-03-10 06:46:48] -rw-r--r-- 1 boinc boinc         0 Mar 10 05:24 boinc_setup_complete
[2026-03-10 06:46:48] -rw-r--r-- 1 boinc boinc      6370 Mar 10 05:24 init_data.xml
[2026-03-10 06:46:48] -rw-r--r-- 1 boinc boinc         0 Mar 10 05:24 boinc_lockfile
[2026-03-10 06:46:48] -rw-r--r-- 1 boinc boinc      2592 Mar 10 05:24 pandaJob.out
[2026-03-10 06:46:48] -rw------- 1 boinc boinc   1006495 Mar 10 05:24 agis_schedconf.cvmfs.json
[2026-03-10 06:46:48] -rw------- 1 boinc boinc   1511578 Mar 10 05:24 agis_ddmendpoints.agis.ALL.json
[2026-03-10 06:46:48] -rw------- 1 boinc boinc       428 Mar 10 05:24 workernode_map.json
[2026-03-10 06:46:48] drwx------ 5 boinc boinc      4096 Mar 10 05:24 pilot3
[2026-03-10 06:46:48] -rw------- 1 boinc boinc        95 Mar 10 06:45 pilot_heartbeat.json
[2026-03-10 06:46:48] -rw------- 1 boinc boinc 196231647 Mar 10 06:45 HITS.48966988._023554.pool.root.1
[2026-03-10 06:46:48] -rw-r--r-- 1 boinc boinc       529 Mar 10 06:45 boinc_task_state.xml
[2026-03-10 06:46:48] -rw------- 1 boinc boinc      1019 Mar 10 06:46 memory_monitor_summary.json
[2026-03-10 06:46:48] -rw------- 1 boinc boinc    268423 Mar 10 06:46 log.48966988._023554.job.log.tgz.1
[2026-03-10 06:46:48] -rw------- 1 boinc boinc      6315 Mar 10 06:46 heartbeat.json
[2026-03-10 06:46:48] -rw-r--r-- 1 boinc boinc        27 Mar 10 06:46 wrapper_checkpoint.txt
[2026-03-10 06:46:48] -rw-r--r-- 1 boinc boinc      8192 Mar 10 06:46 boinc_mmap_file
[2026-03-10 06:46:48] -rw------- 1 boinc boinc       747 Mar 10 06:46 pilotlog.txt
[2026-03-10 06:46:48] -rw------- 1 boinc boinc    720064 Mar 10 06:46 log.48966988._023554.job.log.1
[2026-03-10 06:46:48] -rw------- 1 boinc boinc       357 Mar 10 06:46 output.list
[2026-03-10 06:46:48] -rw-r--r-- 1 boinc boinc       620 Mar 10 06:46 runtime_log
[2026-03-10 06:46:48] -rw------- 1 boinc boinc   1003520 Mar 10 06:46 result.tar.gz
[2026-03-10 06:46:48] -rw------- 1 boinc boinc       658 Mar 10 06:46 uOhKDmbQqJ9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmZgcLDmyoUMan.diag
[2026-03-10 06:46:48] -rw-r--r-- 1 boinc boinc      8901 Mar 10 06:46 runtime_log.err
[2026-03-10 06:46:48] -rw-r--r-- 1 boinc boinc     11709 Mar 10 06:46 stderr.txt
[2026-03-10 06:46:48] HITS file was successfully produced:
[2026-03-10 06:46:48] -rw------- 1 boinc boinc 196231647 Mar 10 06:45 shared/HITS.pool.root.1
[2026-03-10 06:46:48]  *** Contents of shared directory: ***
[2026-03-10 06:46:48] total 398864
[2026-03-10 06:46:48] -rw-r--r-- 2 boinc boinc 210574380 Mar 10 05:24 ATLAS.root_0
[2026-03-10 06:46:48] -rw-r--r-- 2 boinc boinc    597964 Mar 10 05:24 input.tar.gz
[2026-03-10 06:46:48] -rw-r--r-- 2 boinc boinc     15845 Mar 10 05:24 start_atlas.sh
[2026-03-10 06:46:48] -rw------- 1 boinc boinc 196231647 Mar 10 06:45 HITS.pool.root.1
[2026-03-10 06:46:48] -rw------- 1 boinc boinc   1003520 Mar 10 06:46 result.tar.gz
06:46:49 (1400255): run_atlas exited; CPU time 18537.113009
06:46:49 (1400255): called boinc_finish(0)

</stderr_txt>
]]>

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