Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
19:35:49 (26051): wrapper (7.7.26015): starting
19:35:49 (26051): wrapper: running run_atlas (--nthreads 8)
[2026-03-09 19:35:49] Arguments: --nthreads 8
[2026-03-09 19:35:49] Threads: 8
[2026-03-09 19:35:49] Checking for CVMFS
[2026-03-09 19:35:50] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-09 19:35:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-09 19:35:50] Running cvmfs_config stat atlas.cern.ch
[2026-03-09 19:35:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-09 19:35:50] 2.11.0.0 6744 7586 58004 157086 2 50 3337940 4096000 917 130560 0 513232 98.716 907075 290 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-03-09 19:35:50] CVMFS is ok
[2026-03-09 19:35:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-09 19:35:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-09 19:35:50] Further information can be found at the LHC@home message board.
[2026-03-09 19:35:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-09 19:35:50] Checking for apptainer binary...
[2026-03-09 19:35:50] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-03-09 19:35:50] apptainer is not installed, using version from CVMFS
[2026-03-09 19:35:50] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-09 19:35:50] WARNING: Environment variable TMPDIR already has value [/tmp/job_11279875/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node149
[2026-03-09 19:35:50] apptainer works
[2026-03-09 19:35:50] Set ATHENA_PROC_NUMBER=8
[2026-03-09 19:35:50] Set ATHENA_CORE_NUMBER=8
[2026-03-09 19:35:50] Starting ATLAS job with PandaID=7036038260
[2026-03-09 19:35:50] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11279875/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-09 20:17:20]  *** The last 200 lines of the pilot log: ***
[2026-03-09 20:17:20]  domain=
[2026-03-09 20:17:20]  filesize=298638
[2026-03-09 20:17:20]  filetype=log
[2026-03-09 20:17:20]  guid=00ab0623-2d7f-4db0-875a-a0e36a5930cd
[2026-03-09 20:17:20]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-09 20:17:20]  is_altstaged=None
[2026-03-09 20:17:20]  is_tar=False
[2026-03-09 20:17:20]  lfn=log.48700858._002242.job.log.tgz.1
[2026-03-09 20:17:20]  mtime=0
[2026-03-09 20:17:20]  protocol_id=None
[2026-03-09 20:17:20]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-09 20:17:20]  replicas=None
[2026-03-09 20:17:20]  scope=mc23_13p6TeV
[2026-03-09 20:17:20]  status=None
[2026-03-09 20:17:20]  status_code=0
[2026-03-09 20:17:20]  storage_token=
[2026-03-09 20:17:20]  surl=/tmp/job_11279875/atlas/pilot/slots/0/PanDA_Pilot-7036038260/log.48700858._002242.job.log.tgz.1
[2026-03-09 20:17:20]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cb/82/log.48700858._002242.job.log.tgz.1
[2026-03-09 20:17:20]  workdir=None
[2026-03-09 20:17:20] ]
[2026-03-09 20:17:20] 2026-03-09 19:16:44,296 | INFO     | transferring file log.48700858._002242.job.log.tgz.1 from /tmp/job_11279875/atlas/pilot/slots/0/PanDA_Pilot-7036038260/log.48700858._002242.job.log.tgz.1 to /tmp/j
[2026-03-09 20:17:20] 2026-03-09 19:16:44,296 | INFO     | executing command: /usr/bin/env mv /tmp/job_11279875/atlas/pilot/slots/0/PanDA_Pilot-7036038260/log.48700858._002242.job.log.tgz.1 /tmp/job_11279875/atlas/pilot/sl
[2026-03-09 20:17:20] 2026-03-09 19:16:44,305 | INFO     | adding to output.list: log.48700858._002242.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cb/82/log.48700858._002242.job.log.tg
[2026-03-09 20:17:20] 2026-03-09 19:16:44,305 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-09 20:17:20] 2026-03-09 19:16:44,305 | INFO     | summary of transferred files:
[2026-03-09 20:17:20] 2026-03-09 19:16:44,305 | INFO     |  -- lfn=log.48700858._002242.job.log.tgz.1, status_code=0, status=transferred
[2026-03-09 20:17:20] 2026-03-09 19:16:44,305 | INFO     | stage-out finished correctly
[2026-03-09 20:17:20] 2026-03-09 19:16:44,753 | INFO     | time since job start (2447s) is within the limit (349056.0s)
[2026-03-09 20:17:20] 2026-03-09 19:16:45,118 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-09 20:17:20] 2026-03-09 19:16:46,502 | INFO     | monitor loop #189: job 0:7036038260 is in state 'finished'
[2026-03-09 20:17:20] 2026-03-09 19:16:46,502 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-09 20:17:20] 2026-03-09 19:16:46,759 | INFO     | time since job start (2449s) is within the limit (349056.0s)
[2026-03-09 20:17:20] 2026-03-09 19:16:47,267 | INFO     | job 7036038260 has state=finished
[2026-03-09 20:17:20] 2026-03-09 19:16:47,267 | INFO     | preparing for final server update for job 7036038260 in state='finished'
[2026-03-09 20:17:20] 2026-03-09 19:16:47,267 | INFO     | reading metadata from: /tmp/job_11279875/atlas/pilot/slots/0/PanDA_Pilot-7036038260/jobReport.json
[2026-03-09 20:17:20] 2026-03-09 19:16:47,268 | INFO     | added worker_node to metadata from /tmp/job_11279875/atlas/pilot/slots/0/workernode_map.json
[2026-03-09 20:17:20] 2026-03-09 19:16:47,268 | INFO     | this job has now completed (state=finished)
[2026-03-09 20:17:20] 2026-03-09 19:16:47,268 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-09 20:17:20] 2026-03-09 19:16:47,268 | INFO     | log transfer has been attempted: DONE
[2026-03-09 20:17:20] 2026-03-09 19:16:47,268 | INFO     | job 7036038260 has finished - writing final server update
[2026-03-09 20:17:20] 2026-03-09 19:16:47,269 | INFO     | total number of processed events: 400 (read)
[2026-03-09 20:17:20] 2026-03-09 19:16:47,286 | INFO     | using path: /tmp/job_11279875/atlas/pilot/slots/0/PanDA_Pilot-7036038260/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 20:17:20] 2026-03-09 19:16:47,286 | INFO     | extracted standard info from prmon json
[2026-03-09 20:17:20] 2026-03-09 19:16:47,286 | INFO     | extracted standard memory fields from prmon json
[2026-03-09 20:17:20] 2026-03-09 19:16:47,286 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-09 20:17:20] 2026-03-09 19:16:47,286 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-09 20:17:20] 2026-03-09 19:16:47,286 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-09 20:17:20] 2026-03-09 19:16:47,287 | INFO     | fitting pss+swap vs Time
[2026-03-09 20:17:20] 2026-03-09 19:16:47,287 | INFO     | sum of square deviations: 11133232.0
[2026-03-09 20:17:20] 2026-03-09 19:16:47,287 | INFO     | sum of deviations: -2434203109.0
[2026-03-09 20:17:20] 2026-03-09 19:16:47,287 | INFO     | mean x: 1773082654.0
[2026-03-09 20:17:20] 2026-03-09 19:16:47,287 | INFO     | mean y: 2870562.5757575757
[2026-03-09 20:17:20] 2026-03-09 19:16:47,287 | INFO     | intersect: 387674959752.91785
[2026-03-09 20:17:20] 2026-03-09 19:16:47,287 | INFO     | chi2: 0.07203555724665892
[2026-03-09 20:17:20] 2026-03-09 19:16:47,287 | INFO     | current memory leak: -218.64 B/s (using 33 data points, chi2=0.07)
[2026-03-09 20:17:20] 2026-03-09 19:16:47,287 | INFO     | could have reported an average CPU frequency of 2395 MHz (5 samples)
[2026-03-09 20:17:20] 2026-03-09 19:16:47,288 | INFO     | ..............................
[2026-03-09 20:17:20] 2026-03-09 19:16:47,288 | INFO     | . Timing measurements:
[2026-03-09 20:17:20] 2026-03-09 19:16:47,288 | INFO     | . get job = 0 s
[2026-03-09 20:17:20] 2026-03-09 19:16:47,288 | INFO     | . initial setup = 2 s
[2026-03-09 20:17:20] 2026-03-09 19:16:47,288 | INFO     | . payload setup = 2 s
[2026-03-09 20:17:20] 2026-03-09 19:16:47,288 | INFO     | . stage-in = 0 s
[2026-03-09 20:17:20] 2026-03-09 19:16:47,288 | INFO     | . payload execution = 2429 s
[2026-03-09 20:17:20] 2026-03-09 19:16:47,288 | INFO     | . stage-out = 0 s
[2026-03-09 20:17:20] 2026-03-09 19:16:47,288 | INFO     | . log creation = 0 s
[2026-03-09 20:17:20] 2026-03-09 19:16:47,288 | INFO     | ..............................
[2026-03-09 20:17:20] 2026-03-09 19:16:47,335 | INFO     | 
[2026-03-09 20:17:20] 2026-03-09 19:16:47,336 | INFO     | job summary report
[2026-03-09 20:17:20] 2026-03-09 19:16:47,336 | INFO     | --------------------------------------------------
[2026-03-09 20:17:20] 2026-03-09 19:16:47,336 | INFO     | PanDA job id: 7036038260
[2026-03-09 20:17:20] 2026-03-09 19:16:47,336 | INFO     | task id: 48700858
[2026-03-09 20:17:20] 2026-03-09 19:16:47,336 | INFO     | errors: (none)
[2026-03-09 20:17:20] 2026-03-09 19:16:47,336 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-09 20:17:20] 2026-03-09 19:16:47,336 | INFO     | pilot state: finished 
[2026-03-09 20:17:20] 2026-03-09 19:16:47,336 | INFO     | transexitcode: 0
[2026-03-09 20:17:20] 2026-03-09 19:16:47,336 | INFO     | exeerrorcode: 0
[2026-03-09 20:17:20] 2026-03-09 19:16:47,336 | INFO     | exeerrordiag: 
[2026-03-09 20:17:20] 2026-03-09 19:16:47,336 | INFO     | exitcode: 0
[2026-03-09 20:17:20] 2026-03-09 19:16:47,336 | INFO     | exitmsg: OK
[2026-03-09 20:17:20] 2026-03-09 19:16:47,336 | INFO     | cpuconsumptiontime: 15586 s
[2026-03-09 20:17:20] 2026-03-09 19:16:47,336 | INFO     | nevents: 400
[2026-03-09 20:17:20] 2026-03-09 19:16:47,336 | INFO     | neventsw: 0
[2026-03-09 20:17:20] 2026-03-09 19:16:47,336 | INFO     | pid: 4381
[2026-03-09 20:17:20] 2026-03-09 19:16:47,336 | INFO     | pgrp: 4381
[2026-03-09 20:17:20] 2026-03-09 19:16:47,336 | INFO     | corecount: 8
[2026-03-09 20:17:20] 2026-03-09 19:16:47,336 | INFO     | event service: False
[2026-03-09 20:17:20] 2026-03-09 19:16:47,336 | INFO     | sizes: {0: 2280252, 11: 2280252, 2435: 2305504, 2436: 2314532, 2437: 2314588, 2439: 2314814}
[2026-03-09 20:17:20] 2026-03-09 19:16:47,336 | INFO     | --------------------------------------------------
[2026-03-09 20:17:20] 2026-03-09 19:16:47,336 | INFO     | 
[2026-03-09 20:17:20] 2026-03-09 19:16:47,336 | INFO     | executing command: ls -lF /tmp/job_11279875/atlas/pilot/slots/0
[2026-03-09 20:17:20] 2026-03-09 19:16:47,345 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-09 20:17:20] 2026-03-09 19:16:47,345 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-09 20:17:20] 2026-03-09 19:16:47,345 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-09 20:17:20] 2026-03-09 19:16:47,345 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-09 20:17:20] 2026-03-09 19:16:47,345 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-09 20:17:20] 2026-03-09 19:16:47,345 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-09 20:17:20] 2026-03-09 19:16:47,345 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-09 20:17:20] 2026-03-09 19:16:47,345 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-09 20:17:20] 2026-03-09 19:16:47,345 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-09 20:17:20] 2026-03-09 19:16:47,345 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-09 20:17:20] 2026-03-09 19:16:47,345 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-09 20:17:20] 2026-03-09 19:16:47,345 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-09 20:17:20] 2026-03-09 19:16:47,346 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-09 20:17:20] 2026-03-09 19:16:47,346 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-09 20:17:20] 2026-03-09 19:16:47,346 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-09 20:17:20] 2026-03-09 19:16:47,346 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-09 20:17:20] 2026-03-09 19:16:47,346 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-09 20:17:20] 2026-03-09 19:16:47,346 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-09 20:17:20] 2026-03-09 19:16:47,346 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-09 20:17:20] 2026-03-09 19:16:47,346 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-09 20:17:20] 2026-03-09 19:16:47,346 | INFO     | job 7036038260 has completed (purged errors)
[2026-03-09 20:17:20] 2026-03-09 19:16:47,346 | INFO     | overall cleanup function is called
[2026-03-09 20:17:20] 2026-03-09 19:16:48,352 | INFO     | --- collectZombieJob: --- 10, [4381]
[2026-03-09 20:17:20] 2026-03-09 19:16:48,352 | INFO     | zombie collector waiting for pid 4381
[2026-03-09 20:17:20] 2026-03-09 19:16:48,352 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-09 20:17:20] 2026-03-09 19:16:48,352 | INFO     | collected zombie processes
[2026-03-09 20:17:20] 2026-03-09 19:16:48,352 | INFO     | will attempt to kill all subprocesses of pid=4381
[2026-03-09 20:17:20] 2026-03-09 19:16:48,442 | INFO     | process IDs to be killed: [4381] (in reverse order)
[2026-03-09 20:17:20] 2026-03-09 19:16:48,473 | WARNING  | found no corresponding commands to process id(s)
[2026-03-09 20:17:20] 2026-03-09 19:16:48,473 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-09 20:17:20] 2026-03-09 19:16:48,477 | INFO     | did not find any defunct processes belonging to 4381
[2026-03-09 20:17:20] 2026-03-09 19:16:48,479 | INFO     | did not find any defunct processes belonging to 4381
[2026-03-09 20:17:20] 2026-03-09 19:16:48,479 | INFO     | ready for new job
[2026-03-09 20:17:20] 2026-03-09 19:16:48,479 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-09 20:17:20] 2026-03-09 19:16:48,480 | INFO     | **************************************
[2026-03-09 20:17:20] 2026-03-09 19:16:48,480 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-09 20:17:20] 2026-03-09 19:16:48,480 | INFO     | **************************************
[2026-03-09 20:17:20] 2026-03-09 19:16:48,480 | INFO     | 
[2026-03-09 20:17:20] 2026-03-09 19:16:48,493 | INFO     | architecture information:
[2026-03-09 20:17:20] 2026-03-09 19:16:48,493 | INFO     | executing command: cat /etc/os-release
[2026-03-09 20:17:20] 2026-03-09 19:16:48,500 | INFO     | cat /etc/os-release:
[2026-03-09 20:17:20] NAME="CentOS Linux"
[2026-03-09 20:17:20] VERSION="7 (Core)"
[2026-03-09 20:17:20] ID="centos"
[2026-03-09 20:17:20] ID_LIKE="rhel fedora"
[2026-03-09 20:17:20] VERSION_ID="7"
[2026-03-09 20:17:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-09 20:17:20] ANSI_COLOR="0;31"
[2026-03-09 20:17:20] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-09 20:17:20] HOME_URL="https://www.centos.org/"
[2026-03-09 20:17:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-09 20:17:20] 
[2026-03-09 20:17:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-09 20:17:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-09 20:17:20] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-09 20:17:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-09 20:17:20] 
[2026-03-09 20:17:20] 2026-03-09 19:16:48,500 | INFO     | **************************************
[2026-03-09 20:17:20] 2026-03-09 19:16:49,003 | INFO     | executing command: df -mP /tmp/job_11279875/atlas/pilot/slots/0
[2026-03-09 20:17:20] 2026-03-09 19:16:49,008 | INFO     | sufficient remaining disk space (225547649024 B)
[2026-03-09 20:17:20] 2026-03-09 19:16:49,009 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-09 20:17:20] 2026-03-09 19:16:49,009 | INFO     | current server update state: UPDATING_FINAL
[2026-03-09 20:17:20] 2026-03-09 19:16:49,009 | INFO     | update_server=False
[2026-03-09 20:17:20] 2026-03-09 19:16:49,009 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-09 20:17:20] 2026-03-09 19:16:49,009 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-09 20:17:20] 2026-03-09 19:16:49,260 | INFO     | all payload control threads have been joined
[2026-03-09 20:17:20] 2026-03-09 19:16:49,431 | INFO     | all job control threads have been joined
[2026-03-09 20:17:20] 2026-03-09 19:16:49,462 | INFO     | all data control threads have been joined
[2026-03-09 20:17:20] 2026-03-09 19:16:49,864 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-09 20:17:20] 2026-03-09 19:16:50,010 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-09 20:17:20] 2026-03-09 19:16:50,010 | INFO     | aborting loop
[2026-03-09 20:17:20] 2026-03-09 19:16:50,010 | INFO     | [job] retrieve thread has finished
[2026-03-09 20:17:20] 2026-03-09 19:16:50,014 | INFO     | [job] queue monitor thread has finished
[2026-03-09 20:17:20] 2026-03-09 19:16:50,187 | INFO     | [payload] execute_payloads thread has finished
[2026-03-09 20:17:20] 2026-03-09 19:16:50,265 | INFO     | [payload] control thread has finished
[2026-03-09 20:17:20] 2026-03-09 19:16:50,334 | INFO     | [data] copytool_in thread has finished
[2026-03-09 20:17:20] 2026-03-09 19:16:50,436 | INFO     | [job] control thread has finished
[2026-03-09 20:17:20] 2026-03-09 19:16:50,467 | INFO     | [data] control thread has finished
[2026-03-09 20:17:20] 2026-03-09 19:16:50,545 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-09 20:17:20] 2026-03-09 19:16:50,774 | INFO     | [payload] validate_post thread has finished
[2026-03-09 20:17:20] 2026-03-09 19:16:50,905 | INFO     | [payload] failed_post thread has finished
[2026-03-09 20:17:20] 2026-03-09 19:16:51,015 | INFO     | [job] job monitor thread has finished
[2026-03-09 20:17:20] 2026-03-09 19:16:51,093 | INFO     | [job] create_data_payload thread has finished
[2026-03-09 20:17:20] 2026-03-09 19:16:51,169 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-09 20:17:20] 2026-03-09 19:16:51,252 | INFO     | [payload] validate_pre thread has finished
[2026-03-09 20:17:20] 2026-03-09 19:16:51,277 | INFO     | [job] validate thread has finished
[2026-03-09 20:17:20] 2026-03-09 19:16:51,869 | INFO     | [data] copytool_out thread has finished
[2026-03-09 20:17:20] 2026-03-09 19:16:55,174 | INFO     | [data] queue_monitor thread has finished
[2026-03-09 20:17:20] 2026-03-09 19:17:00,672 | INFO     | [monitor] cgroup control has ended
[2026-03-09 20:17:20] 2026-03-09 19:17:01,313 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456063190784)>']
[2026-03-09 20:17:20] 2026-03-09 19:17:06,339 | INFO     | all workflow threads have been joined
[2026-03-09 20:17:20] 2026-03-09 19:17:06,339 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-09 20:17:20] 2026-03-09 19:17:06,339 | INFO     | traces error code: 0
[2026-03-09 20:17:20] 2026-03-09 19:17:06,339 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-09 20:17:20] 2026-03-09 19:17:19,941 | INFO     | PID=30699 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-09 20:17:20] 2026-03-09 19:17:19,941 | INFO     | found 0 job(s) in 20 queues
[2026-03-09 20:17:20] 2026-03-09 19:17:19,942 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-09 20:17:20] 2026-03-09 19:17:19,942 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-09 20:17:20] 2026-03-09 19:17:19,942 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-09 20:17:20] 2026-03-09 19:17:19,942 | INFO     | [monitor] control thread has ended
[2026-03-09 20:17:20] 2026-03-09 19:17:19,995 [wrapper] ==== pilot stdout END ====
[2026-03-09 20:17:20] 2026-03-09 19:17:19,997 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-09 20:17:20] 2026-03-09 19:17:19,998 [wrapper] pilotpid: 30699
[2026-03-09 20:17:20] 2026-03-09 19:17:19,999 [wrapper] Pilot exit status: 0
[2026-03-09 20:17:20] 2026-03-09 19:17:20,003 [wrapper] pandaids: 7036038260
[2026-03-09 20:17:20] 2026-03-09 19:17:20,023 [wrapper] cleanup supervisor_pilot 16462 30700
[2026-03-09 20:17:20] 2026-03-09 19:17:20,024 [wrapper] Test setup, not cleaning
[2026-03-09 20:17:20] 2026-03-09 19:17:20,025 [wrapper] apfmon messages muted
[2026-03-09 20:17:20] 2026-03-09 19:17:20,026 [wrapper] ==== wrapper stdout END ====
[2026-03-09 20:17:20] 2026-03-09 19:17:20,027 [wrapper] ==== wrapper stderr END ====
[2026-03-09 20:17:20]  *** Error codes and diagnostics ***
[2026-03-09 20:17:20]     "exeErrorCode": 0,
[2026-03-09 20:17:20]     "exeErrorDiag": "",
[2026-03-09 20:17:20]     "pilotErrorCode": 0,
[2026-03-09 20:17:20]     "pilotErrorDiag": "",
[2026-03-09 20:17:20]  *** Listing of results directory ***
[2026-03-09 20:17:20] total 333224
[2026-03-09 20:17:20] -rw------- 1 mf493845 unix-user    584627 Mar  2 18:06 pilot3.tar.gz
[2026-03-09 20:17:20] -rwx------ 1 mf493845 unix-user     36322 Mar  2 18:11 runpilot2-wrapper.sh
[2026-03-09 20:17:20] -rw------- 1 mf493845 unix-user      5111 Mar  2 18:12 queuedata.json
[2026-03-09 20:17:20] -rw------- 1 mf493845 unix-user       100 Mar  9 18:47 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-09 20:17:20] -rwxr-xr-x 1 mf493845 unix-user      7986 Mar  9 18:47 run_atlas
[2026-03-09 20:17:20] -rw------- 1 mf493845 unix-user       105 Mar  9 18:47 job.xml
[2026-03-09 20:17:20] -rw-r--r-- 2 mf493845 unix-user 190768422 Mar  9 19:35 EVNT.48700856._000089.pool.root.1
[2026-03-09 20:17:20] -rw-r--r-- 2 mf493845 unix-user     15845 Mar  9 19:35 start_atlas.sh
[2026-03-09 20:17:20] drwxrwx--x 2 mf493845 unix-user       100 Mar  9 19:35 shared
[2026-03-09 20:17:20] -rw-r--r-- 2 mf493845 unix-user    597943 Mar  9 19:35 input.tar.gz
[2026-03-09 20:17:20] -rw------- 1 mf493845 unix-user      6390 Mar  9 19:35 init_data.xml
[2026-03-09 20:17:20] -rw------- 1 mf493845 unix-user         0 Mar  9 19:35 boinc_setup_complete
[2026-03-09 20:17:20] -rw------- 1 mf493845 unix-user      8192 Mar  9 19:35 boinc_mmap_file
[2026-03-09 20:17:20] -rw------- 1 mf493845 unix-user         0 Mar  9 19:35 boinc_lockfile
[2026-03-09 20:17:20] -rw------- 1 mf493845 unix-user      2520 Mar  9 19:35 pandaJob.out
[2026-03-09 20:17:20] -rw------- 1 mf493845 unix-user   1002738 Mar  9 19:35 agis_schedconf.cvmfs.json
[2026-03-09 20:17:20] -rw------- 1 mf493845 unix-user   1511578 Mar  9 19:35 agis_ddmendpoints.agis.ALL.json
[2026-03-09 20:17:20] -rw------- 1 mf493845 unix-user       416 Mar  9 19:35 workernode_map.json
[2026-03-09 20:17:20] drwx------ 5 mf493845 unix-user       440 Mar  9 19:35 pilot3
[2026-03-09 20:17:20] -rw------- 1 mf493845 unix-user 145173162 Mar  9 20:16 HITS.48700858._002242.pool.root.1
[2026-03-09 20:17:20] -rw------- 1 mf493845 unix-user      1016 Mar  9 20:16 memory_monitor_summary.json
[2026-03-09 20:17:20] -rw------- 1 mf493845 unix-user    298638 Mar  9 20:16 log.48700858._002242.job.log.tgz.1
[2026-03-09 20:17:20] -rw------- 1 mf493845 unix-user      6316 Mar  9 20:16 heartbeat.json
[2026-03-09 20:17:20] -rw------- 1 mf493845 unix-user       745 Mar  9 20:17 pilotlog.txt
[2026-03-09 20:17:20] -rw------- 1 mf493845 unix-user        95 Mar  9 20:17 pilot_heartbeat.json
[2026-03-09 20:17:20] -rw------- 1 mf493845 unix-user    392364 Mar  9 20:17 log.48700858._002242.job.log.1
[2026-03-09 20:17:20] -rw------- 1 mf493845 unix-user       357 Mar  9 20:17 output.list
[2026-03-09 20:17:20] -rw------- 1 mf493845 unix-user       620 Mar  9 20:17 runtime_log
[2026-03-09 20:17:20] -rw------- 1 mf493845 unix-user    706560 Mar  9 20:17 result.tar.gz
[2026-03-09 20:17:20] -rw------- 1 mf493845 unix-user      9219 Mar  9 20:17 runtime_log.err
[2026-03-09 20:17:20] -rw------- 1 mf493845 unix-user       644 Mar  9 20:17 oywMDmeyLH9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmo5DLDmMO6ann.diag
[2026-03-09 20:17:20] -rw------- 1 mf493845 unix-user     21637 Mar  9 20:17 stderr.txt
[2026-03-09 20:17:20] HITS file was successfully produced:
[2026-03-09 20:17:20] -rw------- 1 mf493845 unix-user 145173162 Mar  9 20:16 shared/HITS.pool.root.1
[2026-03-09 20:17:20]  *** Contents of shared directory: ***
[2026-03-09 20:17:20] total 329364
[2026-03-09 20:17:20] -rw-r--r-- 2 mf493845 unix-user 190768422 Mar  9 19:35 ATLAS.root_0
[2026-03-09 20:17:20] -rw-r--r-- 2 mf493845 unix-user     15845 Mar  9 19:35 start_atlas.sh
[2026-03-09 20:17:20] -rw-r--r-- 2 mf493845 unix-user    597943 Mar  9 19:35 input.tar.gz
[2026-03-09 20:17:20] -rw------- 1 mf493845 unix-user 145173162 Mar  9 20:16 HITS.pool.root.1
[2026-03-09 20:17:20] -rw------- 1 mf493845 unix-user    706560 Mar  9 20:17 result.tar.gz
20:17:21 (26051): run_atlas exited; CPU time 15615.641471
20:17:21 (26051): called boinc_finish(0)

</stderr_txt>
]]>

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