Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:21:17 (1176939): wrapper (7.7.26015): starting
04:21:17 (1176939): wrapper: running run_atlas (--nthreads 2)
[2026-03-10 04:21:17] Arguments: --nthreads 2
[2026-03-10 04:21:17] Threads: 2
[2026-03-10 04:21:17] Checking for CVMFS
[2026-03-10 04:21:17] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-10 04:21:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-10 04:21:18] Running cvmfs_config stat atlas.cern.ch
[2026-03-10 04:21:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-10 04:21:18] 2.9.2.0 6608 10878 61992 157100 2 49 24810363 36864000 0 130560 0 3056025 99.976 404992 14336 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-10 04:21:18] CVMFS is ok
[2026-03-10 04:21:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-10 04:21:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-10 04:21:18] Further information can be found at the LHC@home message board.
[2026-03-10 04:21:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-10 04:21:18] Checking for apptainer binary...
[2026-03-10 04:21:18] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-10 04:21:18] Running /usr/bin/apptainer --version
[2026-03-10 04:21:18] apptainer version 1.4.1-1.1
[2026-03-10 04:21:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-10 04:21:18] atlasA219
[2026-03-10 04:21:18] apptainer works
[2026-03-10 04:21:18] Set ATHENA_PROC_NUMBER=2
[2026-03-10 04:21:18] Set ATHENA_CORE_NUMBER=2
[2026-03-10 04:21:18] Starting ATLAS job with PandaID=7047232216
[2026-03-10 04:21:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-10 06:35:53]  *** The last 200 lines of the pilot log: ***
[2026-03-10 06:35:53] 2026-03-10 05:35:16,626 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-10 06:35:53] 2026-03-10 05:35:16,626 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-10 06:35:53] 2026-03-10 05:35:16,626 | INFO     | job 7047232216 has completed (purged errors)
[2026-03-10 06:35:53] 2026-03-10 05:35:16,626 | INFO     | overall cleanup function is called
[2026-03-10 06:35:53] 2026-03-10 05:35:16,659 | WARNING  | process 1185377 can no longer be monitored (due to stat problems) - aborting
[2026-03-10 06:35:53] 2026-03-10 05:35:16,692 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-10 06:35:53] 2026-03-10 05:35:16,731 | INFO     | number of running child processes to parent process 1185377: 1
[2026-03-10 06:35:53] 2026-03-10 05:35:16,731 | INFO     | maximum number of monitored processes: 6
[2026-03-10 06:35:53] 2026-03-10 05:35:16,731 | INFO     | aborting job monitoring since job object (job id=7047232216) has expired
[2026-03-10 06:35:53] 2026-03-10 05:35:17,633 | INFO     | --- collectZombieJob: --- 10, [1185377]
[2026-03-10 06:35:53] 2026-03-10 05:35:17,633 | INFO     | zombie collector waiting for pid 1185377
[2026-03-10 06:35:53] 2026-03-10 05:35:17,634 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-10 06:35:53] 2026-03-10 05:35:17,634 | INFO     | collected zombie processes
[2026-03-10 06:35:53] 2026-03-10 05:35:17,634 | INFO     | will attempt to kill all subprocesses of pid=1185377
[2026-03-10 06:35:53] 2026-03-10 05:35:17,675 | INFO     | process IDs to be killed: [1185377] (in reverse order)
[2026-03-10 06:35:53] 2026-03-10 05:35:17,700 | WARNING  | found no corresponding commands to process id(s)
[2026-03-10 06:35:53] 2026-03-10 05:35:17,700 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-10 06:35:53] 2026-03-10 05:35:17,701 | INFO     | did not find any defunct processes belonging to 1185377
[2026-03-10 06:35:53] 2026-03-10 05:35:17,702 | INFO     | did not find any defunct processes belonging to 1185377
[2026-03-10 06:35:53] 2026-03-10 05:35:17,702 | INFO     | ready for new job
[2026-03-10 06:35:53] 2026-03-10 05:35:17,702 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-10 06:35:53] 2026-03-10 05:35:17,703 | INFO     | **************************************
[2026-03-10 06:35:53] 2026-03-10 05:35:17,703 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-10 06:35:53] 2026-03-10 05:35:17,703 | INFO     | **************************************
[2026-03-10 06:35:53] 2026-03-10 05:35:17,703 | INFO     | 
[2026-03-10 06:35:53] 2026-03-10 05:35:17,703 | INFO     | architecture information:
[2026-03-10 06:35:53] 2026-03-10 05:35:17,703 | INFO     | executing command: cat /etc/os-release
[2026-03-10 06:35:53] 2026-03-10 05:35:17,712 | INFO     | cat /etc/os-release:
[2026-03-10 06:35:53] NAME="CentOS Linux"
[2026-03-10 06:35:53] VERSION="7 (Core)"
[2026-03-10 06:35:53] ID="centos"
[2026-03-10 06:35:53] ID_LIKE="rhel fedora"
[2026-03-10 06:35:53] VERSION_ID="7"
[2026-03-10 06:35:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-10 06:35:53] ANSI_COLOR="0;31"
[2026-03-10 06:35:53] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-10 06:35:53] HOME_URL="https://www.centos.org/"
[2026-03-10 06:35:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-10 06:35:53] 
[2026-03-10 06:35:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-10 06:35:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-10 06:35:53] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-10 06:35:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-10 06:35:53] 
[2026-03-10 06:35:53] 2026-03-10 05:35:17,712 | INFO     | **************************************
[2026-03-10 06:35:53] 2026-03-10 05:35:18,216 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-10 06:35:53] 2026-03-10 05:35:18,229 | INFO     | sufficient remaining disk space (183688495104 B)
[2026-03-10 06:35:53] 2026-03-10 05:35:18,229 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-10 06:35:53] 2026-03-10 05:35:18,229 | INFO     | current server update state: UPDATING_FINAL
[2026-03-10 06:35:53] 2026-03-10 05:35:18,229 | INFO     | update_server=False
[2026-03-10 06:35:53] 2026-03-10 05:35:18,229 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-10 06:35:53] 2026-03-10 05:35:18,229 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-10 06:35:53] 2026-03-10 05:35:18,229 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-10 06:35:53] 2026-03-10 05:35:18,229 | INFO     | aborting loop
[2026-03-10 06:35:53] 2026-03-10 05:35:18,357 | INFO     | all job control threads have been joined
[2026-03-10 06:35:53] 2026-03-10 05:35:18,466 | INFO     | all payload control threads have been joined
[2026-03-10 06:35:53] 2026-03-10 05:35:19,067 | INFO     | all data control threads have been joined
[2026-03-10 06:35:53] 2026-03-10 05:35:19,235 | INFO     | [job] retrieve thread has finished
[2026-03-10 06:35:53] 2026-03-10 05:35:19,236 | INFO     | [job] queue monitor thread has finished
[2026-03-10 06:35:53] 2026-03-10 05:35:19,236 | INFO     | [job] job monitor thread has finished
[2026-03-10 06:35:53] 2026-03-10 05:35:19,296 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-10 06:35:53] 2026-03-10 05:35:19,297 | INFO     | [payload] validate_post thread has finished
[2026-03-10 06:35:53] 2026-03-10 05:35:19,363 | INFO     | [job] control thread has finished
[2026-03-10 06:35:53] 2026-03-10 05:35:19,467 | INFO     | [payload] control thread has finished
[2026-03-10 06:35:53] 2026-03-10 05:35:19,807 | INFO     | [payload] failed_post thread has finished
[2026-03-10 06:35:53] 2026-03-10 05:35:19,818 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-10 06:35:53] 2026-03-10 05:35:20,073 | INFO     | [data] control thread has finished
[2026-03-10 06:35:53] 2026-03-10 05:35:20,265 | INFO     | [job] validate thread has finished
[2026-03-10 06:35:53] 2026-03-10 05:35:20,304 | INFO     | job.realtimelogging is not enabled
[2026-03-10 06:35:53] 2026-03-10 05:35:20,377 | INFO     | [job] create_data_payload thread has finished
[2026-03-10 06:35:53] 2026-03-10 05:35:20,471 | INFO     | [payload] execute_payloads thread has finished
[2026-03-10 06:35:53] 2026-03-10 05:35:20,560 | INFO     | [payload] validate_pre thread has finished
[2026-03-10 06:35:53] 2026-03-10 05:35:20,706 | INFO     | [data] copytool_in thread has finished
[2026-03-10 06:35:53] 2026-03-10 05:35:21,302 | INFO     | [data] copytool_out thread has finished
[2026-03-10 06:35:53] 2026-03-10 05:35:21,309 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-10 06:35:53] 2026-03-10 05:35:23,825 | INFO     | [data] queue_monitor thread has finished
[2026-03-10 06:35:53] 2026-03-10 05:35:46,603 | INFO     | [monitor] cgroup control has ended
[2026-03-10 06:35:53] 2026-03-10 05:35:48,031 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140129628411712)>', '<ExcThread(monitor, started 140128970319616)>']
[2026-03-10 06:35:53] 2026-03-10 05:35:48,535 | INFO     | PID=1180969 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-10 06:35:53] 2026-03-10 05:35:48,535 | INFO     | found 0 job(s) in 20 queues
[2026-03-10 06:35:53] 2026-03-10 05:35:48,535 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-10 06:35:53] 2026-03-10 05:35:48,535 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-10 06:35:53] 2026-03-10 05:35:48,535 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-10 06:35:53] 2026-03-10 05:35:48,535 | INFO     | [monitor] control thread has ended
[2026-03-10 06:35:53] 2026-03-10 05:35:53,054 | INFO     | all workflow threads have been joined
[2026-03-10 06:35:53] 2026-03-10 05:35:53,055 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-10 06:35:53] 2026-03-10 05:35:53,055 | INFO     | traces error code: 0
[2026-03-10 06:35:53] 2026-03-10 05:35:53,056 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-10 06:35:53] 2026-03-10 05:35:53,101 [wrapper] ==== pilot stdout END ====
[2026-03-10 06:35:53] 2026-03-10 05:35:53,104 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-10 06:35:53] 2026-03-10 05:35:53,106 [wrapper] pilotpid: 1180969
[2026-03-10 06:35:53] 2026-03-10 05:35:53,109 [wrapper] Pilot exit status: 0
[2026-03-10 06:35:53] 2026-03-10 05:35:53,115 [wrapper] pandaids: 7047232216
[2026-03-10 06:35:53] 2026-03-10 05:35:53,131 [wrapper] cleanup supervisor_pilot 1191370 1180970
[2026-03-10 06:35:53] 2026-03-10 05:35:53,133 [wrapper] Test setup, not cleaning
[2026-03-10 06:35:53] 2026-03-10 05:35:53,136 [wrapper] apfmon messages muted
[2026-03-10 06:35:53] 2026-03-10 05:35:53,138 [wrapper] ==== wrapper stdout END ====
[2026-03-10 06:35:53] 2026-03-10 05:35:53,140 [wrapper] ==== wrapper stderr END ====
[2026-03-10 06:35:53]  *** Error codes and diagnostics ***
[2026-03-10 06:35:53]     "exeErrorCode": 0,
[2026-03-10 06:35:53]     "exeErrorDiag": "",
[2026-03-10 06:35:53]     "pilotErrorCode": 0,
[2026-03-10 06:35:53]     "pilotErrorDiag": "",
[2026-03-10 06:35:53]  *** Listing of results directory ***
[2026-03-10 06:35:53] total 454136
[2026-03-10 06:35:53] -rw-r--r-- 1 boinc boinc    584627 Mar  9 12:47 pilot3.tar.gz
[2026-03-10 06:35:53] -rw-r--r-- 1 boinc boinc      5111 Mar  9 12:47 queuedata.json
[2026-03-10 06:35:53] -rwx------ 1 boinc boinc     36322 Mar  9 12:47 runpilot2-wrapper.sh
[2026-03-10 06:35:53] -rw-r--r-- 1 boinc boinc       100 Mar 10 04:21 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-10 06:35:53] -rwxr-xr-x 1 boinc boinc      7986 Mar 10 04:21 run_atlas
[2026-03-10 06:35:53] -rw-r--r-- 1 boinc boinc       105 Mar 10 04:21 job.xml
[2026-03-10 06:35:53] -rw-r--r-- 2 boinc boinc 265328695 Mar 10 04:21 EVNT.48958633._000086.pool.root.1
[2026-03-10 06:35:53] -rw-r--r-- 2 boinc boinc    597930 Mar 10 04:21 input.tar.gz
[2026-03-10 06:35:53] -rw-r--r-- 2 boinc boinc     15845 Mar 10 04:21 start_atlas.sh
[2026-03-10 06:35:53] drwxrwx--x 2 boinc boinc      4096 Mar 10 04:21 shared
[2026-03-10 06:35:53] -rw-r--r-- 1 boinc boinc         0 Mar 10 04:21 boinc_setup_complete
[2026-03-10 06:35:53] -rw-r--r-- 1 boinc boinc      6207 Mar 10 04:21 init_data.xml
[2026-03-10 06:35:53] -rw-r--r-- 1 boinc boinc         0 Mar 10 04:21 boinc_lockfile
[2026-03-10 06:35:53] -rw-r--r-- 1 boinc boinc      2526 Mar 10 04:21 pandaJob.out
[2026-03-10 06:35:53] -rw------- 1 boinc boinc   1006495 Mar 10 04:21 agis_schedconf.cvmfs.json
[2026-03-10 06:35:53] -rw------- 1 boinc boinc   1511578 Mar 10 04:21 agis_ddmendpoints.agis.ALL.json
[2026-03-10 06:35:53] -rw------- 1 boinc boinc       420 Mar 10 04:21 workernode_map.json
[2026-03-10 06:35:53] drwx------ 5 boinc boinc      4096 Mar 10 04:21 pilot3
[2026-03-10 06:35:53] -rw------- 1 boinc boinc 192919549 Mar 10 06:34 HITS.48958635._002218.pool.root.1
[2026-03-10 06:35:53] -rw-r--r-- 1 boinc boinc       530 Mar 10 06:35 boinc_task_state.xml
[2026-03-10 06:35:53] -rw------- 1 boinc boinc      1018 Mar 10 06:35 memory_monitor_summary.json
[2026-03-10 06:35:53] -rw------- 1 boinc boinc    286501 Mar 10 06:35 log.48958635._002218.job.log.tgz.1
[2026-03-10 06:35:53] -rw------- 1 boinc boinc      6305 Mar 10 06:35 heartbeat.json
[2026-03-10 06:35:53] -rw-r--r-- 1 boinc boinc      8192 Mar 10 06:35 boinc_mmap_file
[2026-03-10 06:35:53] -rw-r--r-- 1 boinc boinc        27 Mar 10 06:35 wrapper_checkpoint.txt
[2026-03-10 06:35:53] -rw------- 1 boinc boinc        95 Mar 10 06:35 pilot_heartbeat.json
[2026-03-10 06:35:53] -rw------- 1 boinc boinc      4820 Mar 10 06:35 pilotlog.txt
[2026-03-10 06:35:53] -rw------- 1 boinc boinc   1146220 Mar 10 06:35 log.48958635._002218.job.log.1
[2026-03-10 06:35:53] -rw------- 1 boinc boinc       357 Mar 10 06:35 output.list
[2026-03-10 06:35:53] -rw-r--r-- 1 boinc boinc       620 Mar 10 06:35 runtime_log
[2026-03-10 06:35:53] -rw------- 1 boinc boinc   1454080 Mar 10 06:35 result.tar.gz
[2026-03-10 06:35:53] -rw-r--r-- 1 boinc boinc      8911 Mar 10 06:35 runtime_log.err
[2026-03-10 06:35:53] -rw------- 1 boinc boinc       661 Mar 10 06:35 ZIvLDmSGoJ9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmdIcLDm04Ltbn.diag
[2026-03-10 06:35:53] -rw-r--r-- 1 boinc boinc     11740 Mar 10 06:35 stderr.txt
[2026-03-10 06:35:53] HITS file was successfully produced:
[2026-03-10 06:35:53] -rw------- 1 boinc boinc 192919549 Mar 10 06:34 shared/HITS.pool.root.1
[2026-03-10 06:35:53]  *** Contents of shared directory: ***
[2026-03-10 06:35:53] total 449536
[2026-03-10 06:35:53] -rw-r--r-- 2 boinc boinc 265328695 Mar 10 04:21 ATLAS.root_0
[2026-03-10 06:35:53] -rw-r--r-- 2 boinc boinc    597930 Mar 10 04:21 input.tar.gz
[2026-03-10 06:35:53] -rw-r--r-- 2 boinc boinc     15845 Mar 10 04:21 start_atlas.sh
[2026-03-10 06:35:53] -rw------- 1 boinc boinc 192919549 Mar 10 06:34 HITS.pool.root.1
[2026-03-10 06:35:53] -rw------- 1 boinc boinc   1454080 Mar 10 06:35 result.tar.gz
06:35:54 (1176939): run_atlas exited; CPU time 15624.148926
06:35:54 (1176939): called boinc_finish(0)

</stderr_txt>
]]>

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