Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:24:36 (720257): wrapper (7.7.26015): starting
18:24:36 (720257): wrapper: running run_atlas (--nthreads 4)
[2026-03-09 18:24:36] Arguments: --nthreads 4
[2026-03-09 18:24:36] Threads: 4
[2026-03-09 18:24:36] Checking for CVMFS
[2026-03-09 18:24:36] No cvmfs_config command found, will try listing directly
[2026-03-09 18:24:36] CVMFS is ok
[2026-03-09 18:24:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-09 18:24:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-09 18:24:36] Further information can be found at the LHC@home message board.
[2026-03-09 18:24:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-09 18:24:36] Checking for apptainer binary...
[2026-03-09 18:24:36] which: no apptainer in ((null))
[2026-03-09 18:24:36] apptainer is not installed, using version from CVMFS
[2026-03-09 18:24:36] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-09 18:24:36] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot36/slots/6/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut29.grid.cesnet.cz
[2026-03-09 18:24:36] apptainer works
[2026-03-09 18:24:36] Set ATHENA_PROC_NUMBER=4
[2026-03-09 18:24:36] Set ATHENA_CORE_NUMBER=4
[2026-03-09 18:24:36] Starting ATLAS job with PandaID=7040789332
[2026-03-09 18:24:36] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot36/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-09 19:38:03]  *** The last 200 lines of the pilot log: ***
[2026-03-09 19:38:03]  status_code=0
[2026-03-09 19:38:03]  storage_token=
[2026-03-09 19:38:03]  surl=/var/lib/boinc/var/slot36/slots/6/PanDA_Pilot-7040789332/log.48955006._034608.job.log.tgz.1
[2026-03-09 19:38:03]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7e/f3/log.48955006._034608.job.log.tgz.1
[2026-03-09 19:38:03]  workdir=None
[2026-03-09 19:38:03] ]
[2026-03-09 19:38:03] 2026-03-09 18:37:05,894 | INFO     | transferring file log.48955006._034608.job.log.tgz.1 from /var/lib/boinc/var/slot36/slots/6/PanDA_Pilot-7040789332/log.48955006._034608.job.log.tgz.1 to /var/lib/b
[2026-03-09 19:38:03] 2026-03-09 18:37:05,894 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot36/slots/6/PanDA_Pilot-7040789332/log.48955006._034608.job.log.tgz.1 /var/lib/boinc/var/slot36/slots/6/lo
[2026-03-09 19:38:03] 2026-03-09 18:37:05,911 | INFO     | adding to output.list: log.48955006._034608.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7e/f3/log.48955006._034608.job.log.tg
[2026-03-09 19:38:03] 2026-03-09 18:37:05,911 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-09 19:38:03] 2026-03-09 18:37:05,911 | INFO     | summary of transferred files:
[2026-03-09 19:38:03] 2026-03-09 18:37:05,912 | INFO     |  -- lfn=log.48955006._034608.job.log.tgz.1, status_code=0, status=transferred
[2026-03-09 19:38:03] 2026-03-09 18:37:05,912 | INFO     | stage-out finished correctly
[2026-03-09 19:38:03] 2026-03-09 18:37:06,604 | INFO     | time since job start (4335s) is within the limit (349056.0s)
[2026-03-09 19:38:03] 2026-03-09 18:37:08,155 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-09 19:38:03] 2026-03-09 18:37:08,610 | INFO     | time since job start (4337s) is within the limit (349056.0s)
[2026-03-09 19:38:03] 2026-03-09 18:37:10,181 | INFO     | job 7040789332 has state=finished
[2026-03-09 19:38:03] 2026-03-09 18:37:10,182 | INFO     | preparing for final server update for job 7040789332 in state='finished'
[2026-03-09 19:38:03] 2026-03-09 18:37:10,182 | INFO     | reading metadata from: /var/lib/boinc/var/slot36/slots/6/PanDA_Pilot-7040789332/jobReport.json
[2026-03-09 19:38:03] 2026-03-09 18:37:10,190 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot36/slots/6/workernode_map.json
[2026-03-09 19:38:03] 2026-03-09 18:37:10,190 | INFO     | this job has now completed (state=finished)
[2026-03-09 19:38:03] 2026-03-09 18:37:10,190 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-09 19:38:03] 2026-03-09 18:37:10,190 | INFO     | log transfer has been attempted: DONE
[2026-03-09 19:38:03] 2026-03-09 18:37:10,190 | INFO     | job 7040789332 has finished - writing final server update
[2026-03-09 19:38:03] 2026-03-09 18:37:10,190 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2924447/.job.ad'
[2026-03-09 19:38:03] 2026-03-09 18:37:10,190 | INFO     | total number of processed events: 400 (read)
[2026-03-09 19:38:03] 2026-03-09 18:37:10,211 | INFO     | using path: /var/lib/boinc/var/slot36/slots/6/PanDA_Pilot-7040789332/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 19:38:03] 2026-03-09 18:37:10,212 | INFO     | extracted standard info from prmon json
[2026-03-09 19:38:03] 2026-03-09 18:37:10,212 | INFO     | extracted standard memory fields from prmon json
[2026-03-09 19:38:03] 2026-03-09 18:37:10,212 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-09 19:38:03] 2026-03-09 18:37:10,212 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-09 19:38:03] 2026-03-09 18:37:10,212 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-09 19:38:03] 2026-03-09 18:37:10,213 | INFO     | fitting pss+swap vs Time
[2026-03-09 19:38:03] 2026-03-09 18:37:10,213 | INFO     | sum of square deviations: 81266640.0
[2026-03-09 19:38:03] 2026-03-09 18:37:10,213 | INFO     | sum of deviations: -182468934.0
[2026-03-09 19:38:03] 2026-03-09 18:37:10,213 | INFO     | mean x: 1773079339.5
[2026-03-09 19:38:03] 2026-03-09 18:37:10,213 | INFO     | mean y: 2331387.40625
[2026-03-09 19:38:03] 2026-03-09 18:37:10,213 | INFO     | intersect: 3983447094.613895
[2026-03-09 19:38:03] 2026-03-09 18:37:10,214 | INFO     | chi2: 0.0007630456191980319
[2026-03-09 19:38:03] 2026-03-09 18:37:10,214 | INFO     | current memory leak: -2.25 B/s (using 64 data points, chi2=0.00)
[2026-03-09 19:38:03] 2026-03-09 18:37:10,214 | INFO     | could have reported an average CPU frequency of 3570 MHz (6 samples)
[2026-03-09 19:38:03] 2026-03-09 18:37:10,214 | INFO     | ..............................
[2026-03-09 19:38:03] 2026-03-09 18:37:10,214 | INFO     | . Timing measurements:
[2026-03-09 19:38:03] 2026-03-09 18:37:10,214 | INFO     | . get job = 0 s
[2026-03-09 19:38:03] 2026-03-09 18:37:10,214 | INFO     | . initial setup = 5 s
[2026-03-09 19:38:03] 2026-03-09 18:37:10,214 | INFO     | . payload setup = 5 s
[2026-03-09 19:38:03] 2026-03-09 18:37:10,214 | INFO     | . stage-in = 0 s
[2026-03-09 19:38:03] 2026-03-09 18:37:10,214 | INFO     | . payload execution = 4314 s
[2026-03-09 19:38:03] 2026-03-09 18:37:10,214 | INFO     | . stage-out = 0 s
[2026-03-09 19:38:03] 2026-03-09 18:37:10,214 | INFO     | . log creation = 0 s
[2026-03-09 19:38:03] 2026-03-09 18:37:10,214 | INFO     | ..............................
[2026-03-09 19:38:03] 2026-03-09 18:37:10,295 | INFO     | 
[2026-03-09 19:38:03] 2026-03-09 18:37:10,295 | INFO     | job summary report
[2026-03-09 19:38:03] 2026-03-09 18:37:10,295 | INFO     | --------------------------------------------------
[2026-03-09 19:38:03] 2026-03-09 18:37:10,295 | INFO     | PanDA job id: 7040789332
[2026-03-09 19:38:03] 2026-03-09 18:37:10,295 | INFO     | task id: 48955006
[2026-03-09 19:38:03] 2026-03-09 18:37:10,295 | INFO     | errors: (none)
[2026-03-09 19:38:03] 2026-03-09 18:37:10,295 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-09 19:38:03] 2026-03-09 18:37:10,295 | INFO     | pilot state: finished 
[2026-03-09 19:38:03] 2026-03-09 18:37:10,296 | INFO     | transexitcode: 0
[2026-03-09 19:38:03] 2026-03-09 18:37:10,296 | INFO     | exeerrorcode: 0
[2026-03-09 19:38:03] 2026-03-09 18:37:10,296 | INFO     | exeerrordiag: 
[2026-03-09 19:38:03] 2026-03-09 18:37:10,296 | INFO     | exitcode: 0
[2026-03-09 19:38:03] 2026-03-09 18:37:10,296 | INFO     | exitmsg: OK
[2026-03-09 19:38:03] 2026-03-09 18:37:10,296 | INFO     | cpuconsumptiontime: 16433 s
[2026-03-09 19:38:03] 2026-03-09 18:37:10,296 | INFO     | nevents: 400
[2026-03-09 19:38:03] 2026-03-09 18:37:10,296 | INFO     | neventsw: 0
[2026-03-09 19:38:03] 2026-03-09 18:37:10,296 | INFO     | pid: 730818
[2026-03-09 19:38:03] 2026-03-09 18:37:10,296 | INFO     | pgrp: 730818
[2026-03-09 19:38:03] 2026-03-09 18:37:10,296 | INFO     | corecount: 4
[2026-03-09 19:38:03] 2026-03-09 18:37:10,296 | INFO     | event service: False
[2026-03-09 19:38:03] 2026-03-09 18:37:10,296 | INFO     | sizes: {0: 2280243, 11: 2280243, 4323: 2306264, 4324: 2315284, 4326: 2315340, 4328: 2315534}
[2026-03-09 19:38:03] 2026-03-09 18:37:10,296 | INFO     | --------------------------------------------------
[2026-03-09 19:38:03] 2026-03-09 18:37:10,296 | INFO     | 
[2026-03-09 19:38:03] 2026-03-09 18:37:10,296 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot36/slots/6
[2026-03-09 19:38:03] 2026-03-09 18:37:10,321 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-09 19:38:03] 2026-03-09 18:37:10,322 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-09 19:38:03] 2026-03-09 18:37:10,322 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-09 19:38:03] 2026-03-09 18:37:10,322 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-09 19:38:03] 2026-03-09 18:37:10,322 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-09 19:38:03] 2026-03-09 18:37:10,322 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-09 19:38:03] 2026-03-09 18:37:10,322 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-09 19:38:03] 2026-03-09 18:37:10,322 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-09 19:38:03] 2026-03-09 18:37:10,322 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-09 19:38:03] 2026-03-09 18:37:10,322 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-09 19:38:03] 2026-03-09 18:37:10,322 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-09 19:38:03] 2026-03-09 18:37:10,322 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-09 19:38:03] 2026-03-09 18:37:10,322 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-09 19:38:03] 2026-03-09 18:37:10,322 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-09 19:38:03] 2026-03-09 18:37:10,322 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-09 19:38:03] 2026-03-09 18:37:10,322 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-09 19:38:03] 2026-03-09 18:37:10,322 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-09 19:38:03] 2026-03-09 18:37:10,322 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-09 19:38:03] 2026-03-09 18:37:10,322 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-09 19:38:03] 2026-03-09 18:37:10,322 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-09 19:38:03] 2026-03-09 18:37:10,322 | INFO     | job 7040789332 has completed (purged errors)
[2026-03-09 19:38:03] 2026-03-09 18:37:10,322 | INFO     | overall cleanup function is called
[2026-03-09 19:38:03] 2026-03-09 18:37:10,442 | WARNING  | process 730818 can no longer be monitored (due to stat problems) - aborting
[2026-03-09 19:38:03] 2026-03-09 18:37:10,772 | INFO     | using path: /var/lib/boinc/var/slot36/slots/6/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 19:38:03] 2026-03-09 18:37:10,772 | INFO     | using path: /var/lib/boinc/var/slot36/slots/6/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 19:38:03] 2026-03-09 18:37:10,772 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-09 19:38:03] 2026-03-09 18:37:10,773 | WARNING  | maxPSS not found in memory monitor output
[2026-03-09 19:38:03] 2026-03-09 18:37:10,773 | INFO     | skipping file size check of payload stdout file (/var/lib/boinc/var/slot36/slots/6/PanDA_Pilot-7040789332/payload.stdout) since it has not been created yet
[2026-03-09 19:38:03] 2026-03-09 18:37:10,773 | INFO     | executing command: df -mP /var/lib/boinc/var/slot36/slots/6
[2026-03-09 19:38:03] 2026-03-09 18:37:10,786 | INFO     | sufficient remaining disk space (18714984448 B)
[2026-03-09 19:38:03] 2026-03-09 18:37:10,786 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-03-09 19:38:03] 2026-03-09 18:37:10,786 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot36/slots/6/PanDA_Pilot-7040789332/HITS.48955006._034608.pool.root.1 since it does not exist
[2026-03-09 19:38:03] 2026-03-09 18:37:11,171 | INFO     | number of running child processes to parent process 730818: 1
[2026-03-09 19:38:03] 2026-03-09 18:37:11,171 | INFO     | maximum number of monitored processes: 6
[2026-03-09 19:38:03] 2026-03-09 18:37:11,171 | INFO     | aborting job monitoring since job object (job id=7040789332) has expired
[2026-03-09 19:38:03] 2026-03-09 18:37:11,330 | INFO     | --- collectZombieJob: --- 10, [730818]
[2026-03-09 19:38:03] 2026-03-09 18:37:11,330 | INFO     | zombie collector waiting for pid 730818
[2026-03-09 19:38:03] 2026-03-09 18:37:11,330 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-09 19:38:03] 2026-03-09 18:37:11,330 | INFO     | collected zombie processes
[2026-03-09 19:38:03] 2026-03-09 18:37:11,330 | INFO     | will attempt to kill all subprocesses of pid=730818
[2026-03-09 19:38:03] 2026-03-09 18:37:11,770 | INFO     | process IDs to be killed: [730818] (in reverse order)
[2026-03-09 19:38:03] 2026-03-09 18:37:11,983 | WARNING  | found no corresponding commands to process id(s)
[2026-03-09 19:38:03] 2026-03-09 18:37:11,984 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-09 19:38:03] 2026-03-09 18:37:12,009 | INFO     | did not find any defunct processes belonging to 730818
[2026-03-09 19:38:03] 2026-03-09 18:37:12,033 | INFO     | did not find any defunct processes belonging to 730818
[2026-03-09 19:38:03] 2026-03-09 18:37:12,033 | INFO     | ready for new job
[2026-03-09 19:38:03] 2026-03-09 18:37:12,033 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-09 19:38:03] 2026-03-09 18:37:12,034 | INFO     | **************************************
[2026-03-09 19:38:03] 2026-03-09 18:37:12,034 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-09 19:38:03] 2026-03-09 18:37:12,034 | INFO     | **************************************
[2026-03-09 19:38:03] 2026-03-09 18:37:12,034 | INFO     | 
[2026-03-09 19:38:03] 2026-03-09 18:37:12,040 | INFO     | architecture information:
[2026-03-09 19:38:03] 2026-03-09 18:37:12,041 | INFO     | executing command: cat /etc/os-release
[2026-03-09 19:38:03] 2026-03-09 18:37:12,055 | INFO     | cat /etc/os-release:
[2026-03-09 19:38:03] NAME="CentOS Linux"
[2026-03-09 19:38:03] VERSION="7 (Core)"
[2026-03-09 19:38:03] ID="centos"
[2026-03-09 19:38:03] ID_LIKE="rhel fedora"
[2026-03-09 19:38:03] VERSION_ID="7"
[2026-03-09 19:38:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-09 19:38:03] ANSI_COLOR="0;31"
[2026-03-09 19:38:03] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-09 19:38:03] HOME_URL="https://www.centos.org/"
[2026-03-09 19:38:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-09 19:38:03] 
[2026-03-09 19:38:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-09 19:38:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-09 19:38:03] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-09 19:38:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-09 19:38:03] 
[2026-03-09 19:38:03] 2026-03-09 18:37:12,055 | INFO     | **************************************
[2026-03-09 19:38:03] 2026-03-09 18:37:12,558 | INFO     | executing command: df -mP /var/lib/boinc/var/slot36/slots/6
[2026-03-09 19:38:03] 2026-03-09 18:37:12,573 | INFO     | sufficient remaining disk space (18711838720 B)
[2026-03-09 19:38:03] 2026-03-09 18:37:12,573 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-09 19:38:03] 2026-03-09 18:37:12,573 | INFO     | current server update state: UPDATING_FINAL
[2026-03-09 19:38:03] 2026-03-09 18:37:12,573 | INFO     | update_server=False
[2026-03-09 19:38:03] 2026-03-09 18:37:12,573 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-09 19:38:03] 2026-03-09 18:37:12,573 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-09 19:38:03] 2026-03-09 18:37:12,573 | INFO     | aborting loop
[2026-03-09 19:38:03] 2026-03-09 18:37:12,804 | INFO     | all data control threads have been joined
[2026-03-09 19:38:03] 2026-03-09 18:37:13,143 | INFO     | all payload control threads have been joined
[2026-03-09 19:38:03] 2026-03-09 18:37:13,578 | INFO     | [job] retrieve thread has finished
[2026-03-09 19:38:03] 2026-03-09 18:37:13,578 | INFO     | [job] job monitor thread has finished
[2026-03-09 19:38:03] 2026-03-09 18:37:13,594 | INFO     | [payload] validate_pre thread has finished
[2026-03-09 19:38:03] 2026-03-09 18:37:13,605 | INFO     | [job] validate thread has finished
[2026-03-09 19:38:03] 2026-03-09 18:37:13,671 | INFO     | all job control threads have been joined
[2026-03-09 19:38:03] 2026-03-09 18:37:13,722 | INFO     | [payload] execute_payloads thread has finished
[2026-03-09 19:38:03] 2026-03-09 18:37:13,812 | INFO     | [data] control thread has finished
[2026-03-09 19:38:03] 2026-03-09 18:37:13,982 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-09 19:38:03] 2026-03-09 18:37:14,097 | INFO     | [data] copytool_in thread has finished
[2026-03-09 19:38:03] 2026-03-09 18:37:14,148 | INFO     | [payload] control thread has finished
[2026-03-09 19:38:03] 2026-03-09 18:37:14,220 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-09 19:38:03] 2026-03-09 18:37:14,280 | INFO     | [payload] validate_post thread has finished
[2026-03-09 19:38:03] 2026-03-09 18:37:14,309 | INFO     | [payload] failed_post thread has finished
[2026-03-09 19:38:03] 2026-03-09 18:37:14,679 | INFO     | [job] control thread has finished
[2026-03-09 19:38:03] 2026-03-09 18:37:14,954 | INFO     | [job] create_data_payload thread has finished
[2026-03-09 19:38:03] 2026-03-09 18:37:15,307 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-09 19:38:03] 2026-03-09 18:37:15,989 | INFO     | [data] copytool_out thread has finished
[2026-03-09 19:38:03] 2026-03-09 18:37:16,314 | INFO     | [job] queue monitor thread has finished
[2026-03-09 19:38:03] 2026-03-09 18:37:18,228 | INFO     | [data] queue_monitor thread has finished
[2026-03-09 19:38:03] 2026-03-09 18:37:23,475 | INFO     | job.realtimelogging is not enabled
[2026-03-09 19:38:03] 2026-03-09 18:37:24,481 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-09 19:38:03] 2026-03-09 18:37:42,132 | INFO     | PID=724805 has CPU usage=7.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-09 19:38:03] 2026-03-09 18:37:42,132 | INFO     | .. there are 59 such processes running
[2026-03-09 19:38:03] 2026-03-09 18:37:42,132 | INFO     | found 0 job(s) in 20 queues
[2026-03-09 19:38:03] 2026-03-09 18:37:42,132 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-09 19:38:03] 2026-03-09 18:37:42,132 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-09 19:38:03] 2026-03-09 18:37:57,539 | INFO     | [monitor] cgroup control has ended
[2026-03-09 19:38:03] 2026-03-09 18:37:57,936 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22411135604544)>', '<ExcThread(monitor, started 22410895304448)>']
[2026-03-09 19:38:03] 2026-03-09 18:37:58,220 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-09 19:38:03] 2026-03-09 18:37:58,220 | INFO     | [monitor] control thread has ended
[2026-03-09 19:38:03] 2026-03-09 18:38:02,962 | INFO     | all workflow threads have been joined
[2026-03-09 19:38:03] 2026-03-09 18:38:02,962 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-09 19:38:03] 2026-03-09 18:38:02,963 | INFO     | traces error code: 0
[2026-03-09 19:38:03] 2026-03-09 18:38:02,963 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-09 19:38:03] 2026-03-09 18:38:03,081 [wrapper] ==== pilot stdout END ====
[2026-03-09 19:38:03] 2026-03-09 18:38:03,083 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-09 19:38:03] 2026-03-09 18:38:03,084 [wrapper] pilotpid: 724805
[2026-03-09 19:38:03] 2026-03-09 18:38:03,086 [wrapper] Pilot exit status: 0
[2026-03-09 19:38:03] 2026-03-09 18:38:03,094 [wrapper] pandaids: 7040789332
[2026-03-09 19:38:03] 2026-03-09 18:38:03,215 [wrapper] cleanup supervisor_pilot 1558870 724806
[2026-03-09 19:38:03] 2026-03-09 18:38:03,218 [wrapper] Test setup, not cleaning
[2026-03-09 19:38:03] 2026-03-09 18:38:03,221 [wrapper] apfmon messages muted
[2026-03-09 19:38:03] 2026-03-09 18:38:03,223 [wrapper] ==== wrapper stdout END ====
[2026-03-09 19:38:03] 2026-03-09 18:38:03,225 [wrapper] ==== wrapper stderr END ====
[2026-03-09 19:38:03]  *** Error codes and diagnostics ***
[2026-03-09 19:38:03]     "exeErrorCode": 0,
[2026-03-09 19:38:03]     "exeErrorDiag": "",
[2026-03-09 19:38:03]     "pilotErrorCode": 0,
[2026-03-09 19:38:03]     "pilotErrorDiag": "",
[2026-03-09 19:38:03]  *** Listing of results directory ***
[2026-03-09 19:38:03] total 611044
[2026-03-09 19:38:03] -rw-r--r--. 1 boinc boinc      5111 Mar  9 10:23 queuedata.json
[2026-03-09 19:38:03] -rw-r--r--. 1 boinc boinc    584627 Mar  9 10:23 pilot3.tar.gz
[2026-03-09 19:38:03] -rwx------. 1 boinc boinc     36322 Mar  9 10:23 runpilot2-wrapper.sh
[2026-03-09 19:38:03] -rw-r--r--. 1 boinc boinc       100 Mar  9 18:24 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-09 19:38:03] -rwxr-xr-x. 1 boinc boinc      7986 Mar  9 18:24 run_atlas
[2026-03-09 19:38:03] -rw-r--r--. 1 boinc boinc       105 Mar  9 18:24 job.xml
[2026-03-09 19:38:03] -rw-r--r--. 2 boinc boinc 438161642 Mar  9 18:24 EVNT.46701403._000692.pool.root.1
[2026-03-09 19:38:03] -rw-r--r--. 1 boinc boinc      6705 Mar  9 18:24 init_data.xml
[2026-03-09 19:38:03] -rw-r--r--. 2 boinc boinc     15845 Mar  9 18:24 start_atlas.sh
[2026-03-09 19:38:03] drwxrwx--x. 2 boinc boinc      4096 Mar  9 18:24 shared
[2026-03-09 19:38:03] -rw-r--r--. 2 boinc boinc    597959 Mar  9 18:24 input.tar.gz
[2026-03-09 19:38:03] -rw-r--r--. 1 boinc boinc         0 Mar  9 18:24 boinc_lockfile
[2026-03-09 19:38:03] -rw-r--r--. 1 boinc boinc      2565 Mar  9 18:24 pandaJob.out
[2026-03-09 19:38:03] -rw-------. 1 boinc boinc   1002716 Mar  9 18:24 agis_schedconf.cvmfs.json
[2026-03-09 19:38:03] -rw-------. 1 boinc boinc   1511578 Mar  9 18:24 agis_ddmendpoints.agis.ALL.json
[2026-03-09 19:38:03] -rw-------. 1 boinc boinc       444 Mar  9 18:24 workernode_map.json
[2026-03-09 19:38:03] drwx------. 5 boinc boinc      4096 Mar  9 18:24 pilot3
[2026-03-09 19:38:03] -rw-------. 1 boinc boinc 181744306 Mar  9 19:36 HITS.48955006._034608.pool.root.1
[2026-03-09 19:38:03] -rw-------. 1 boinc boinc      1029 Mar  9 19:37 memory_monitor_summary.json
[2026-03-09 19:38:03] -rw-r--r--. 1 boinc boinc       530 Mar  9 19:37 boinc_task_state.xml
[2026-03-09 19:38:03] -rw-------. 1 boinc boinc    290017 Mar  9 19:37 log.48955006._034608.job.log.tgz.1
[2026-03-09 19:38:03] -rw-------. 1 boinc boinc        95 Mar  9 19:37 pilot_heartbeat.json
[2026-03-09 19:38:03] -rw-------. 1 boinc boinc      6370 Mar  9 19:37 heartbeat.json
[2026-03-09 19:38:03] -rw-r--r--. 1 boinc boinc      8192 Mar  9 19:38 boinc_mmap_file
[2026-03-09 19:38:03] -rw-r--r--. 1 boinc boinc        27 Mar  9 19:38 wrapper_checkpoint.txt
[2026-03-09 19:38:03] -rw-------. 1 boinc boinc      4900 Mar  9 19:38 pilotlog.txt
[2026-03-09 19:38:03] -rw-------. 1 boinc boinc    642724 Mar  9 19:38 log.48955006._034608.job.log.1
[2026-03-09 19:38:03] -rw-------. 1 boinc boinc       357 Mar  9 19:38 output.list
[2026-03-09 19:38:03] -rw-r--r--. 1 boinc boinc       620 Mar  9 19:38 runtime_log
[2026-03-09 19:38:03] -rw-------. 1 boinc boinc    952320 Mar  9 19:38 result.tar.gz
[2026-03-09 19:38:03] -rw-------. 1 boinc boinc       662 Mar  9 19:38 trZNDm90lJ9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDms4bLDmQktinn.diag
[2026-03-09 19:38:03] -rw-r--r--. 1 boinc boinc      9204 Mar  9 19:38 runtime_log.err
[2026-03-09 19:38:03] -rw-r--r--. 1 boinc boinc     22157 Mar  9 19:38 stderr.txt
[2026-03-09 19:38:03] HITS file was successfully produced:
[2026-03-09 19:38:03] -rw-------. 1 boinc boinc 181744306 Mar  9 19:36 shared/HITS.pool.root.1
[2026-03-09 19:38:03]  *** Contents of shared directory: ***
[2026-03-09 19:38:03] total 606924
[2026-03-09 19:38:03] -rw-r--r--. 2 boinc boinc 438161642 Mar  9 18:24 ATLAS.root_0
[2026-03-09 19:38:03] -rw-r--r--. 2 boinc boinc     15845 Mar  9 18:24 start_atlas.sh
[2026-03-09 19:38:03] -rw-r--r--. 2 boinc boinc    597959 Mar  9 18:24 input.tar.gz
[2026-03-09 19:38:03] -rw-------. 1 boinc boinc 181744306 Mar  9 19:36 HITS.pool.root.1
[2026-03-09 19:38:03] -rw-------. 1 boinc boinc    952320 Mar  9 19:38 result.tar.gz
19:38:04 (720257): run_atlas exited; CPU time 16604.633582
19:38:04 (720257): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN