Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
13:21:17 (3267238): wrapper (7.7.26015): starting
13:21:17 (3267238): wrapper: running run_atlas (--nthreads 4)
[2026-03-09 13:21:17] Arguments: --nthreads 4
[2026-03-09 13:21:17] Threads: 4
[2026-03-09 13:21:17] Checking for CVMFS
[2026-03-09 13:21:17] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-09 13:21:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-09 13:21:18] Running cvmfs_config stat atlas.cern.ch
[2026-03-09 13:21:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-09 13:21:18] 2.13.3.0 1437033 4757 53680 157085 2 9 3269857 4096000 2748 130560 0 3599592 99.991 168253 1058 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2026-03-09 13:21:18] CVMFS is ok
[2026-03-09 13:21:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-09 13:21:18] Small home clusters do not require a local http proxy but it is suggested if
[2026-03-09 13:21:18] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-03-09 13:21:18] Further information can be found at the LHC@home message board.
[2026-03-09 13:21:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-09 13:21:18] Checking for apptainer binary...
[2026-03-09 13:21:18] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-09 13:21:18] Running /usr/bin/apptainer --version
[2026-03-09 13:21:18] apptainer version 1.4.5
[2026-03-09 13:21:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-09 13:21:18] T5810-Ubuntu
[2026-03-09 13:21:18] apptainer works
[2026-03-09 13:21:18] Set ATHENA_PROC_NUMBER=4
[2026-03-09 13:21:18] Set ATHENA_CORE_NUMBER=4
[2026-03-09 13:21:18] Starting ATLAS job with PandaID=7047365576
[2026-03-09 13:21:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/whitlerd/Desktop/BOINC/slots/20 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-09 17:36:10]  *** The last 200 lines of the pilot log: ***
[2026-03-09 17:36:10] 2026-03-09 21:35:11,491 | INFO     | time since job start (15212s) is within the limit (349056.0s)
[2026-03-09 17:36:10] 2026-03-09 21:35:11,753 | INFO     | job 7047365576 has state=finished
[2026-03-09 17:36:10] 2026-03-09 21:35:11,754 | INFO     | preparing for final server update for job 7047365576 in state='finished'
[2026-03-09 17:36:10] 2026-03-09 21:35:11,754 | INFO     | reading metadata from: /home/whitlerd/Desktop/BOINC/slots/20/PanDA_Pilot-7047365576/jobReport.json
[2026-03-09 17:36:10] 2026-03-09 21:35:11,756 | INFO     | added worker_node to metadata from /home/whitlerd/Desktop/BOINC/slots/20/workernode_map.json
[2026-03-09 17:36:10] 2026-03-09 21:35:11,756 | INFO     | this job has now completed (state=finished)
[2026-03-09 17:36:10] 2026-03-09 21:35:11,756 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-09 17:36:10] 2026-03-09 21:35:11,757 | INFO     | log transfer has been attempted: DONE
[2026-03-09 17:36:10] 2026-03-09 21:35:11,757 | INFO     | job 7047365576 has finished - writing final server update
[2026-03-09 17:36:10] 2026-03-09 21:35:11,757 | INFO     | total number of processed events: 400 (read)
[2026-03-09 17:36:10] 2026-03-09 21:35:11,764 | INFO     | using path: /home/whitlerd/Desktop/BOINC/slots/20/PanDA_Pilot-7047365576/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 17:36:10] 2026-03-09 21:35:11,764 | INFO     | extracted standard info from prmon json
[2026-03-09 17:36:10] 2026-03-09 21:35:11,764 | INFO     | extracted standard memory fields from prmon json
[2026-03-09 17:36:10] 2026-03-09 21:35:11,764 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-09 17:36:10] 2026-03-09 21:35:11,765 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-09 17:36:10] 2026-03-09 21:35:11,765 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-09 17:36:10] 2026-03-09 21:35:11,769 | INFO     | fitting pss+swap vs Time
[2026-03-09 17:36:10] 2026-03-09 21:35:11,769 | INFO     | sum of square deviations: 4787066500.0
[2026-03-09 17:36:10] 2026-03-09 21:35:11,771 | INFO     | sum of deviations: -98238774615.0
[2026-03-09 17:36:10] 2026-03-09 21:35:11,771 | INFO     | mean x: 1773084486.0
[2026-03-09 17:36:10] 2026-03-09 21:35:11,771 | INFO     | mean y: 2395981.2088353415
[2026-03-09 17:36:10] 2026-03-09 21:35:11,771 | INFO     | intersect: 36389115738.18466
[2026-03-09 17:36:10] 2026-03-09 21:35:11,771 | INFO     | chi2: 1.9009468200285469
[2026-03-09 17:36:10] 2026-03-09 21:35:11,772 | INFO     | sum of square deviations: 4504437945.0
[2026-03-09 17:36:10] 2026-03-09 21:35:11,773 | INFO     | sum of deviations: -95797440239.99998
[2026-03-09 17:36:10] 2026-03-09 21:35:11,773 | INFO     | mean x: 1773084333.5
[2026-03-09 17:36:10] 2026-03-09 21:35:11,774 | INFO     | mean y: 2397298.6721311477
[2026-03-09 17:36:10] 2026-03-09 21:35:11,774 | INFO     | intersect: 37711195278.11604
[2026-03-09 17:36:10] 2026-03-09 21:35:11,774 | INFO     | chi2: 1.8890966390045922
[2026-03-09 17:36:10] 2026-03-09 21:35:11,774 | INFO     | current chi2=1.8890966390045922 (change=0.6233830898949964 %)
[2026-03-09 17:36:10] 2026-03-09 21:35:11,774 | INFO     | right removable region: 243
[2026-03-09 17:36:10] 2026-03-09 21:35:11,775 | INFO     | sum of square deviations: 4504437945.0
[2026-03-09 17:36:10] 2026-03-09 21:35:11,776 | INFO     | sum of deviations: -126891656520.50002
[2026-03-09 17:36:10] 2026-03-09 21:35:11,776 | INFO     | mean x: 1773084638.5
[2026-03-09 17:36:10] 2026-03-09 21:35:11,776 | INFO     | mean y: 2411240.651639344
[2026-03-09 17:36:10] 2026-03-09 21:35:11,777 | INFO     | intersect: 49950850907.8157
[2026-03-09 17:36:10] 2026-03-09 21:35:11,777 | INFO     | chi2: 0.5524764220608986
[2026-03-09 17:36:10] 2026-03-09 21:35:11,777 | INFO     | current chi2=0.5524764220608986 (change=70.93677654524801 %)
[2026-03-09 17:36:10] 2026-03-09 21:35:11,777 | INFO     | sum of square deviations: 4233158440.0
[2026-03-09 17:36:10] 2026-03-09 21:35:11,779 | INFO     | sum of deviations: -117877547044.0
[2026-03-09 17:36:10] 2026-03-09 21:35:11,779 | INFO     | mean x: 1773084791.0
[2026-03-09 17:36:10] 2026-03-09 21:35:11,779 | INFO     | mean y: 2406162.3054393306
[2026-03-09 17:36:10] 2026-03-09 21:35:11,779 | INFO     | intersect: 49376151281.1164
[2026-03-09 17:36:10] 2026-03-09 21:35:11,780 | INFO     | chi2: 0.548870659790926
[2026-03-09 17:36:10] 2026-03-09 21:35:11,780 | INFO     | current chi2=0.548870659790926 (change=0.6526545072316606 %)
[2026-03-09 17:36:10] 2026-03-09 21:35:11,780 | INFO     | left removable region: 20
[2026-03-09 17:36:10] 2026-03-09 21:35:11,780 | INFO     | sum of square deviations: 3438620752.0
[2026-03-09 17:36:10] 2026-03-09 21:35:11,781 | INFO     | sum of deviations: -93377091755.99997
[2026-03-09 17:36:10] 2026-03-09 21:35:11,782 | INFO     | mean x: 1773084913.0
[2026-03-09 17:36:10] 2026-03-09 21:35:11,782 | INFO     | mean y: 2394666.201793722
[2026-03-09 17:36:10] 2026-03-09 21:35:11,782 | INFO     | intersect: 48151209133.77068
[2026-03-09 17:36:10] 2026-03-09 21:35:11,782 | INFO     | chi2: 0.5132870690889529
[2026-03-09 17:36:10] 2026-03-09 21:35:11,782 | INFO     | current memory leak: -27.16 B/s (using 223 data points, chi2=0.51)
[2026-03-09 17:36:10] 2026-03-09 21:35:11,783 | INFO     | could have reported an average CPU frequency of 2576 MHz (12 samples)
[2026-03-09 17:36:10] 2026-03-09 21:35:11,783 | INFO     | ..............................
[2026-03-09 17:36:10] 2026-03-09 21:35:11,783 | INFO     | . Timing measurements:
[2026-03-09 17:36:10] 2026-03-09 21:35:11,783 | INFO     | . get job = 0 s
[2026-03-09 17:36:10] 2026-03-09 21:35:11,783 | INFO     | . initial setup = 8 s
[2026-03-09 17:36:10] 2026-03-09 21:35:11,783 | INFO     | . payload setup = 6 s
[2026-03-09 17:36:10] 2026-03-09 21:35:11,783 | INFO     | . stage-in = 0 s
[2026-03-09 17:36:10] 2026-03-09 21:35:11,783 | INFO     | . payload execution = 15181 s
[2026-03-09 17:36:10] 2026-03-09 21:35:11,783 | INFO     | . stage-out = 3 s
[2026-03-09 17:36:10] 2026-03-09 21:35:11,784 | INFO     | . log creation = 0 s
[2026-03-09 17:36:10] 2026-03-09 21:35:11,784 | INFO     | ..............................
[2026-03-09 17:36:10] 2026-03-09 21:35:11,873 | INFO     | 
[2026-03-09 17:36:10] 2026-03-09 21:35:11,873 | INFO     | job summary report
[2026-03-09 17:36:10] 2026-03-09 21:35:11,873 | INFO     | --------------------------------------------------
[2026-03-09 17:36:10] 2026-03-09 21:35:11,873 | INFO     | PanDA job id: 7047365576
[2026-03-09 17:36:10] 2026-03-09 21:35:11,874 | INFO     | task id: 48966988
[2026-03-09 17:36:10] 2026-03-09 21:35:11,874 | INFO     | errors: (none)
[2026-03-09 17:36:10] 2026-03-09 21:35:11,874 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-09 17:36:10] 2026-03-09 21:35:11,874 | INFO     | pilot state: finished 
[2026-03-09 17:36:10] 2026-03-09 21:35:11,874 | INFO     | transexitcode: 0
[2026-03-09 17:36:10] 2026-03-09 21:35:11,874 | INFO     | exeerrorcode: 0
[2026-03-09 17:36:10] 2026-03-09 21:35:11,874 | INFO     | exeerrordiag: 
[2026-03-09 17:36:10] 2026-03-09 21:35:11,874 | INFO     | exitcode: 0
[2026-03-09 17:36:10] 2026-03-09 21:35:11,874 | INFO     | exitmsg: OK
[2026-03-09 17:36:10] 2026-03-09 21:35:11,874 | INFO     | cpuconsumptiontime: 59261 s
[2026-03-09 17:36:10] 2026-03-09 21:35:11,875 | INFO     | nevents: 400
[2026-03-09 17:36:10] 2026-03-09 21:35:11,875 | INFO     | neventsw: 0
[2026-03-09 17:36:10] 2026-03-09 21:35:11,875 | INFO     | pid: 3276206
[2026-03-09 17:36:10] 2026-03-09 21:35:11,875 | INFO     | pgrp: 3276206
[2026-03-09 17:36:10] 2026-03-09 21:35:11,875 | INFO     | corecount: 4
[2026-03-09 17:36:10] 2026-03-09 21:35:11,875 | INFO     | event service: False
[2026-03-09 17:36:10] 2026-03-09 21:35:11,875 | INFO     | sizes: {0: 2279797, 1: 2280314, 12: 2280314, 15191: 2311329, 15192: 2311328, 15196: 2320412, 15199: 2320624, 15201: 2320818}
[2026-03-09 17:36:10] 2026-03-09 21:35:11,875 | INFO     | --------------------------------------------------
[2026-03-09 17:36:10] 2026-03-09 21:35:11,875 | INFO     | 
[2026-03-09 17:36:10] 2026-03-09 21:35:11,876 | INFO     | executing command: ls -lF /home/whitlerd/Desktop/BOINC/slots/20
[2026-03-09 17:36:10] 2026-03-09 21:35:11,898 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-09 17:36:10] 2026-03-09 21:35:11,898 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-09 17:36:10] 2026-03-09 21:35:11,898 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-09 17:36:10] 2026-03-09 21:35:11,899 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-09 17:36:10] 2026-03-09 21:35:11,899 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-09 17:36:10] 2026-03-09 21:35:11,899 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-09 17:36:10] 2026-03-09 21:35:11,899 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-09 17:36:10] 2026-03-09 21:35:11,899 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-09 17:36:10] 2026-03-09 21:35:11,899 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-09 17:36:10] 2026-03-09 21:35:11,899 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-09 17:36:10] 2026-03-09 21:35:11,899 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-09 17:36:10] 2026-03-09 21:35:11,899 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-09 17:36:10] 2026-03-09 21:35:11,900 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-09 17:36:10] 2026-03-09 21:35:11,900 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-09 17:36:10] 2026-03-09 21:35:11,900 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-09 17:36:10] 2026-03-09 21:35:11,900 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-09 17:36:10] 2026-03-09 21:35:11,900 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-09 17:36:10] 2026-03-09 21:35:11,900 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-09 17:36:10] 2026-03-09 21:35:11,900 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-09 17:36:10] 2026-03-09 21:35:11,900 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-09 17:36:10] 2026-03-09 21:35:11,901 | INFO     | job 7047365576 has completed (purged errors)
[2026-03-09 17:36:10] 2026-03-09 21:35:11,901 | INFO     | overall cleanup function is called
[2026-03-09 17:36:10] 2026-03-09 21:35:12,909 | INFO     | --- collectZombieJob: --- 10, [3276206]
[2026-03-09 17:36:10] 2026-03-09 21:35:12,909 | INFO     | zombie collector waiting for pid 3276206
[2026-03-09 17:36:10] 2026-03-09 21:35:12,909 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-09 17:36:10] 2026-03-09 21:35:12,909 | INFO     | collected zombie processes
[2026-03-09 17:36:10] 2026-03-09 21:35:12,909 | INFO     | will attempt to kill all subprocesses of pid=3276206
[2026-03-09 17:36:10] 2026-03-09 21:35:13,148 | INFO     | process IDs to be killed: [3276206] (in reverse order)
[2026-03-09 17:36:10] 2026-03-09 21:35:13,213 | WARNING  | found no corresponding commands to process id(s)
[2026-03-09 17:36:10] 2026-03-09 21:35:13,213 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-09 17:36:10] 2026-03-09 21:35:13,216 | INFO     | did not find any defunct processes belonging to 3276206
[2026-03-09 17:36:10] 2026-03-09 21:35:13,219 | INFO     | did not find any defunct processes belonging to 3276206
[2026-03-09 17:36:10] 2026-03-09 21:35:13,219 | INFO     | ready for new job
[2026-03-09 17:36:10] 2026-03-09 21:35:13,219 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-09 17:36:10] 2026-03-09 21:35:13,221 | INFO     | **************************************
[2026-03-09 17:36:10] 2026-03-09 21:35:13,221 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-09 17:36:10] 2026-03-09 21:35:13,221 | INFO     | **************************************
[2026-03-09 17:36:10] 2026-03-09 21:35:13,221 | INFO     | 
[2026-03-09 17:36:10] 2026-03-09 21:35:13,222 | INFO     | architecture information:
[2026-03-09 17:36:10] 2026-03-09 21:35:13,224 | INFO     | executing command: cat /etc/os-release
[2026-03-09 17:36:10] 2026-03-09 21:35:13,244 | INFO     | cat /etc/os-release:
[2026-03-09 17:36:10] NAME="CentOS Linux"
[2026-03-09 17:36:10] VERSION="7 (Core)"
[2026-03-09 17:36:10] ID="centos"
[2026-03-09 17:36:10] ID_LIKE="rhel fedora"
[2026-03-09 17:36:10] VERSION_ID="7"
[2026-03-09 17:36:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-09 17:36:10] ANSI_COLOR="0;31"
[2026-03-09 17:36:10] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-09 17:36:10] HOME_URL="https://www.centos.org/"
[2026-03-09 17:36:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-09 17:36:10] 
[2026-03-09 17:36:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-09 17:36:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-09 17:36:10] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-09 17:36:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-09 17:36:10] 
[2026-03-09 17:36:10] 2026-03-09 21:35:13,245 | INFO     | **************************************
[2026-03-09 17:36:10] 2026-03-09 21:35:13,748 | INFO     | executing command: df -mP /home/whitlerd/Desktop/BOINC/slots/20
[2026-03-09 17:36:10] 2026-03-09 21:35:13,766 | INFO     | sufficient remaining disk space (406193176576 B)
[2026-03-09 17:36:10] 2026-03-09 21:35:13,766 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-09 17:36:10] 2026-03-09 21:35:13,766 | INFO     | current server update state: UPDATING_FINAL
[2026-03-09 17:36:10] 2026-03-09 21:35:13,766 | INFO     | update_server=False
[2026-03-09 17:36:10] 2026-03-09 21:35:13,766 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-09 17:36:10] 2026-03-09 21:35:13,768 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-09 17:36:10] 2026-03-09 21:35:13,768 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-09 17:36:10] 2026-03-09 21:35:13,768 | INFO     | aborting loop
[2026-03-09 17:36:10] 2026-03-09 21:35:14,226 | INFO     | all data control threads have been joined
[2026-03-09 17:36:10] 2026-03-09 21:35:14,341 | INFO     | all job control threads have been joined
[2026-03-09 17:36:10] 2026-03-09 21:35:14,772 | INFO     | [job] retrieve thread has finished
[2026-03-09 17:36:10] 2026-03-09 21:35:14,773 | INFO     | [job] job monitor thread has finished
[2026-03-09 17:36:10] 2026-03-09 21:35:14,773 | INFO     | [job] queue monitor thread has finished
[2026-03-09 17:36:10] 2026-03-09 21:35:14,798 | INFO     | [job] create_data_payload thread has finished
[2026-03-09 17:36:10] 2026-03-09 21:35:14,871 | INFO     | [payload] validate_pre thread has finished
[2026-03-09 17:36:10] 2026-03-09 21:35:14,922 | INFO     | all payload control threads have been joined
[2026-03-09 17:36:10] 2026-03-09 21:35:14,965 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-09 17:36:10] 2026-03-09 21:35:15,134 | INFO     | [payload] validate_post thread has finished
[2026-03-09 17:36:10] 2026-03-09 21:35:15,226 | INFO     | [data] control thread has finished
[2026-03-09 17:36:10] 2026-03-09 21:35:15,236 | INFO     | [data] copytool_in thread has finished
[2026-03-09 17:36:10] 2026-03-09 21:35:15,347 | INFO     | [job] control thread has finished
[2026-03-09 17:36:10] 2026-03-09 21:35:15,537 | INFO     | [payload] failed_post thread has finished
[2026-03-09 17:36:10] 2026-03-09 21:35:15,879 | INFO     | [payload] execute_payloads thread has finished
[2026-03-09 17:36:10] 2026-03-09 21:35:15,927 | INFO     | [payload] control thread has finished
[2026-03-09 17:36:10] 2026-03-09 21:35:16,016 | INFO     | [job] validate thread has finished
[2026-03-09 17:36:10] 2026-03-09 21:35:16,162 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-09 17:36:10] 2026-03-09 21:35:16,970 | INFO     | [data] copytool_out thread has finished
[2026-03-09 17:36:10] 2026-03-09 21:35:20,167 | INFO     | [data] queue_monitor thread has finished
[2026-03-09 17:36:10] 2026-03-09 21:35:24,189 | INFO     | job.realtimelogging is not enabled
[2026-03-09 17:36:10] 2026-03-09 21:35:25,194 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-09 17:36:10] 2026-03-09 21:35:44,845 | INFO     | PID=3271513 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-09 17:36:10] 2026-03-09 21:35:44,846 | INFO     | .. there are 4 such processes running
[2026-03-09 17:36:10] 2026-03-09 21:35:44,846 | INFO     | found 0 job(s) in 20 queues
[2026-03-09 17:36:10] 2026-03-09 21:35:44,847 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-09 17:36:10] 2026-03-09 21:35:44,847 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-09 17:36:10] 2026-03-09 21:36:03,262 | INFO     | [monitor] cgroup control has ended
[2026-03-09 17:36:10] 2026-03-09 21:36:04,932 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 127243301816128)>', '<ExcThread(monitor, started 127242793363200)>']
[2026-03-09 17:36:10] 2026-03-09 21:36:04,938 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-09 17:36:10] 2026-03-09 21:36:04,938 | INFO     | [monitor] control thread has ended
[2026-03-09 17:36:10] 2026-03-09 21:36:09,957 | INFO     | all workflow threads have been joined
[2026-03-09 17:36:10] 2026-03-09 21:36:09,957 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-09 17:36:10] 2026-03-09 21:36:09,958 | INFO     | traces error code: 0
[2026-03-09 17:36:10] 2026-03-09 21:36:09,958 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-09 17:36:10] 2026-03-09 21:36:10,133 [wrapper] ==== pilot stdout END ====
[2026-03-09 17:36:10] 2026-03-09 21:36:10,137 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-09 17:36:10] 2026-03-09 21:36:10,139 [wrapper] pilotpid: 3271513
[2026-03-09 17:36:10] 2026-03-09 21:36:10,143 [wrapper] Pilot exit status: 0
[2026-03-09 17:36:10] 2026-03-09 21:36:10,155 [wrapper] pandaids: 7047365576
[2026-03-09 17:36:10] 2026-03-09 21:36:10,202 [wrapper] cleanup supervisor_pilot 3379202 3271514
[2026-03-09 17:36:10] 2026-03-09 21:36:10,206 [wrapper] Test setup, not cleaning
[2026-03-09 17:36:10] 2026-03-09 21:36:10,211 [wrapper] apfmon messages muted
[2026-03-09 17:36:10] 2026-03-09 21:36:10,214 [wrapper] ==== wrapper stdout END ====
[2026-03-09 17:36:10] 2026-03-09 21:36:10,217 [wrapper] ==== wrapper stderr END ====
[2026-03-09 17:36:10]  *** Error codes and diagnostics ***
[2026-03-09 17:36:10]     "exeErrorCode": 0,
[2026-03-09 17:36:10]     "exeErrorDiag": "",
[2026-03-09 17:36:10]     "pilotErrorCode": 0,
[2026-03-09 17:36:10]     "pilotErrorDiag": "",
[2026-03-09 17:36:10]  *** Listing of results directory ***
[2026-03-09 17:36:10] total 416504
[2026-03-09 17:36:10] -rw-r--r-- 1 whitlerd whitlerd    584627 Mar  9 09:02 pilot3.tar.gz
[2026-03-09 17:36:10] -rw-r--r-- 1 whitlerd whitlerd      5111 Mar  9 10:06 queuedata.json
[2026-03-09 17:36:10] -rwx------ 1 whitlerd whitlerd     36322 Mar  9 10:06 runpilot2-wrapper.sh
[2026-03-09 17:36:10] -rw-rw-r-- 1 whitlerd whitlerd       100 Mar  9 13:21 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-09 17:36:10] -rwxr-xr-x 1 whitlerd whitlerd      7986 Mar  9 13:21 run_atlas
[2026-03-09 17:36:10] -rw-rw-r-- 1 whitlerd whitlerd       105 Mar  9 13:21 job.xml
[2026-03-09 17:36:10] -rw-r--r-- 2 whitlerd whitlerd 211075406 Mar  9 13:21 EVNT.48966985._000909.pool.root.1
[2026-03-09 17:36:10] -rw-r--r-- 2 whitlerd whitlerd     15845 Mar  9 13:21 start_atlas.sh
[2026-03-09 17:36:10] drwxrwx--x 2 whitlerd whitlerd      4096 Mar  9 13:21 shared
[2026-03-09 17:36:10] -rw-r--r-- 2 whitlerd whitlerd    597968 Mar  9 13:21 input.tar.gz
[2026-03-09 17:36:10] -rw-rw-r-- 1 whitlerd whitlerd      9087 Mar  9 13:21 init_data.xml
[2026-03-09 17:36:10] -rw-rw-r-- 1 whitlerd whitlerd         0 Mar  9 13:21 boinc_setup_complete
[2026-03-09 17:36:10] -rw-rw-r-- 1 whitlerd whitlerd         0 Mar  9 13:21 boinc_lockfile
[2026-03-09 17:36:10] -rw-rw-r-- 1 whitlerd whitlerd      2592 Mar  9 13:21 pandaJob.out
[2026-03-09 17:36:10] -rw------- 1 whitlerd whitlerd   1002716 Mar  9 13:21 agis_schedconf.cvmfs.json
[2026-03-09 17:36:10] -rw------- 1 whitlerd whitlerd       434 Mar  9 13:21 workernode_map.json
[2026-03-09 17:36:10] drwx------ 5 whitlerd whitlerd      4096 Mar  9 13:21 pilot3
[2026-03-09 17:36:10] -rw------- 1 whitlerd whitlerd 206258268 Mar  9 17:34 HITS.48966988._023365.pool.root.1
[2026-03-09 17:36:10] -rw-rw-r-- 1 whitlerd whitlerd       530 Mar  9 17:34 boinc_task_state.xml
[2026-03-09 17:36:10] -rw------- 1 whitlerd whitlerd      1030 Mar  9 17:34 memory_monitor_summary.json
[2026-03-09 17:36:10] -rw------- 1 whitlerd whitlerd   1511578 Mar  9 17:35 agis_ddmendpoints.agis.ALL.json
[2026-03-09 17:36:10] -rw------- 1 whitlerd whitlerd    428315 Mar  9 17:35 log.48966988._023365.job.log.tgz.1
[2026-03-09 17:36:10] -rw------- 1 whitlerd whitlerd      6351 Mar  9 17:35 heartbeat.json
[2026-03-09 17:36:10] -rw------- 1 whitlerd whitlerd        95 Mar  9 17:35 pilot_heartbeat.json
[2026-03-09 17:36:10] -rw-rw-r-- 1 whitlerd whitlerd        28 Mar  9 17:36 wrapper_checkpoint.txt
[2026-03-09 17:36:10] -rw-rw-r-- 1 whitlerd whitlerd      8192 Mar  9 17:36 boinc_mmap_file
[2026-03-09 17:36:10] -rw------- 1 whitlerd whitlerd      4907 Mar  9 17:36 pilotlog.txt
[2026-03-09 17:36:10] -rw------- 1 whitlerd whitlerd   2182053 Mar  9 17:36 log.48966988._023365.job.log.1
[2026-03-09 17:36:10] -rw------- 1 whitlerd whitlerd       357 Mar  9 17:36 output.list
[2026-03-09 17:36:10] -rw-rw-r-- 1 whitlerd whitlerd       620 Mar  9 17:36 runtime_log
[2026-03-09 17:36:10] -rw------- 1 whitlerd whitlerd   2631680 Mar  9 17:36 result.tar.gz
[2026-03-09 17:36:10] -rw-rw-r-- 1 whitlerd whitlerd      9036 Mar  9 17:36 runtime_log.err
[2026-03-09 17:36:10] -rw------- 1 whitlerd whitlerd       649 Mar  9 17:36 HjAODmXQqJ9n9Rq4apOajLDm4fhM0noT9bVooX4SDmcwZLDmDuw5Fm.diag
[2026-03-09 17:36:10] -rw-rw-r-- 1 whitlerd whitlerd     21390 Mar  9 17:36 stderr.txt
[2026-03-09 17:36:10] HITS file was successfully produced:
[2026-03-09 17:36:10] -rw------- 1 whitlerd whitlerd 206258268 Mar  9 17:34 shared/HITS.pool.root.1
[2026-03-09 17:36:10]  *** Contents of shared directory: ***
[2026-03-09 17:36:10] total 410740
[2026-03-09 17:36:10] -rw-r--r-- 2 whitlerd whitlerd 211075406 Mar  9 13:21 ATLAS.root_0
[2026-03-09 17:36:10] -rw-r--r-- 2 whitlerd whitlerd     15845 Mar  9 13:21 start_atlas.sh
[2026-03-09 17:36:10] -rw-r--r-- 2 whitlerd whitlerd    597968 Mar  9 13:21 input.tar.gz
[2026-03-09 17:36:10] -rw------- 1 whitlerd whitlerd 206258268 Mar  9 17:34 HITS.pool.root.1
[2026-03-09 17:36:10] -rw------- 1 whitlerd whitlerd   2631680 Mar  9 17:36 result.tar.gz
17:36:12 (3267238): run_atlas exited; CPU time 59733.893898
17:36:12 (3267238): called boinc_finish(0)

</stderr_txt>
]]>

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