Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:52:31 (1001942): wrapper (7.7.26015): starting
17:52:31 (1001942): wrapper: running run_atlas (--nthreads 4)
[2026-03-09 17:52:31] Arguments: --nthreads 4
[2026-03-09 17:52:31] Threads: 4
[2026-03-09 17:52:31] Checking for CVMFS
[2026-03-09 17:52:31] No cvmfs_config command found, will try listing directly
[2026-03-09 17:52:31] CVMFS is ok
[2026-03-09 17:52:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-09 17:52:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-09 17:52:31] Further information can be found at the LHC@home message board.
[2026-03-09 17:52:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-09 17:52:31] Checking for apptainer binary...
[2026-03-09 17:52:31] which: no apptainer in ((null))
[2026-03-09 17:52:31] apptainer is not installed, using version from CVMFS
[2026-03-09 17:52:31] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-09 17:52:31] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot16/slots/2/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut21.grid.cesnet.cz
[2026-03-09 17:52:31] apptainer works
[2026-03-09 17:52:31] Set ATHENA_PROC_NUMBER=4
[2026-03-09 17:52:31] Set ATHENA_CORE_NUMBER=4
[2026-03-09 17:52:31] Starting ATLAS job with PandaID=7040860096
[2026-03-09 17:52:31] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot16/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-09 19:14:58]  *** The last 200 lines of the pilot log: ***
[2026-03-09 19:14:58]  filetype=log
[2026-03-09 19:14:58]  guid=c0f7c8e3-c9df-43c1-b40a-917e2e20e6af
[2026-03-09 19:14:58]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-09 19:14:58]  is_altstaged=None
[2026-03-09 19:14:58]  is_tar=False
[2026-03-09 19:14:58]  lfn=log.48955010._018024.job.log.tgz.1
[2026-03-09 19:14:58]  mtime=0
[2026-03-09 19:14:58]  protocol_id=None
[2026-03-09 19:14:58]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-09 19:14:58]  replicas=None
[2026-03-09 19:14:58]  scope=mc23_13p6TeV
[2026-03-09 19:14:58]  status=None
[2026-03-09 19:14:58]  status_code=0
[2026-03-09 19:14:58]  storage_token=
[2026-03-09 19:14:58]  surl=/var/lib/boinc/var/slot16/slots/2/PanDA_Pilot-7040860096/log.48955010._018024.job.log.tgz.1
[2026-03-09 19:14:58]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/49/59/log.48955010._018024.job.log.tgz.1
[2026-03-09 19:14:58]  workdir=None
[2026-03-09 19:14:58] ]
[2026-03-09 19:14:58] 2026-03-09 18:14:11,360 | INFO     | transferring file log.48955010._018024.job.log.tgz.1 from /var/lib/boinc/var/slot16/slots/2/PanDA_Pilot-7040860096/log.48955010._018024.job.log.tgz.1 to /var/lib/b
[2026-03-09 19:14:58] 2026-03-09 18:14:11,360 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot16/slots/2/PanDA_Pilot-7040860096/log.48955010._018024.job.log.tgz.1 /var/lib/boinc/var/slot16/slots/2/lo
[2026-03-09 19:14:58] 2026-03-09 18:14:11,375 | INFO     | adding to output.list: log.48955010._018024.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/49/59/log.48955010._018024.job.log.tg
[2026-03-09 19:14:58] 2026-03-09 18:14:11,376 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-09 19:14:58] 2026-03-09 18:14:11,376 | INFO     | summary of transferred files:
[2026-03-09 19:14:58] 2026-03-09 18:14:11,376 | INFO     |  -- lfn=log.48955010._018024.job.log.tgz.1, status_code=0, status=transferred
[2026-03-09 19:14:58] 2026-03-09 18:14:11,376 | INFO     | stage-out finished correctly
[2026-03-09 19:14:58] 2026-03-09 18:14:12,869 | INFO     | time since job start (4888s) is within the limit (349056.0s)
[2026-03-09 19:14:58] 2026-03-09 18:14:12,945 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-09 19:14:58] 2026-03-09 18:14:13,081 | INFO     | monitor loop #352: job 0:7040860096 is in state 'finished'
[2026-03-09 19:14:58] 2026-03-09 18:14:13,081 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-09 19:14:58] 2026-03-09 18:14:14,543 | INFO     | job 7040860096 has state=finished
[2026-03-09 19:14:58] 2026-03-09 18:14:14,543 | INFO     | preparing for final server update for job 7040860096 in state='finished'
[2026-03-09 19:14:58] 2026-03-09 18:14:14,543 | INFO     | reading metadata from: /var/lib/boinc/var/slot16/slots/2/PanDA_Pilot-7040860096/jobReport.json
[2026-03-09 19:14:58] 2026-03-09 18:14:14,545 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot16/slots/2/workernode_map.json
[2026-03-09 19:14:58] 2026-03-09 18:14:14,546 | INFO     | this job has now completed (state=finished)
[2026-03-09 19:14:58] 2026-03-09 18:14:14,546 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-09 19:14:58] 2026-03-09 18:14:14,546 | INFO     | log transfer has been attempted: DONE
[2026-03-09 19:14:58] 2026-03-09 18:14:14,546 | INFO     | job 7040860096 has finished - writing final server update
[2026-03-09 19:14:58] 2026-03-09 18:14:14,546 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_72554/.job.ad'
[2026-03-09 19:14:58] 2026-03-09 18:14:14,546 | INFO     | total number of processed events: 400 (read)
[2026-03-09 19:14:58] 2026-03-09 18:14:14,564 | INFO     | using path: /var/lib/boinc/var/slot16/slots/2/PanDA_Pilot-7040860096/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 19:14:58] 2026-03-09 18:14:14,564 | INFO     | extracted standard info from prmon json
[2026-03-09 19:14:58] 2026-03-09 18:14:14,564 | INFO     | extracted standard memory fields from prmon json
[2026-03-09 19:14:58] 2026-03-09 18:14:14,564 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-09 19:14:58] 2026-03-09 18:14:14,565 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-09 19:14:58] 2026-03-09 18:14:14,565 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-09 19:14:58] 2026-03-09 18:14:14,566 | INFO     | fitting pss+swap vs Time
[2026-03-09 19:14:58] 2026-03-09 18:14:14,566 | INFO     | sum of square deviations: 120605052.0
[2026-03-09 19:14:58] 2026-03-09 18:14:14,566 | INFO     | sum of deviations: 599720646.0
[2026-03-09 19:14:58] 2026-03-09 18:14:14,566 | INFO     | mean x: 1773077685.0
[2026-03-09 19:14:58] 2026-03-09 18:14:14,566 | INFO     | mean y: 2324847.2739726026
[2026-03-09 19:14:58] 2026-03-09 18:14:14,566 | INFO     | intersect: -8814480726.147482
[2026-03-09 19:14:58] 2026-03-09 18:14:14,567 | INFO     | chi2: 0.00015110967050044794
[2026-03-09 19:14:58] 2026-03-09 18:14:14,567 | INFO     | current memory leak: 4.97 B/s (using 73 data points, chi2=0.00)
[2026-03-09 19:14:58] 2026-03-09 18:14:14,567 | INFO     | could have reported an average CPU frequency of 3598 MHz (6 samples)
[2026-03-09 19:14:58] 2026-03-09 18:14:14,567 | INFO     | ..............................
[2026-03-09 19:14:58] 2026-03-09 18:14:14,567 | INFO     | . Timing measurements:
[2026-03-09 19:14:58] 2026-03-09 18:14:14,567 | INFO     | . get job = 0 s
[2026-03-09 19:14:58] 2026-03-09 18:14:14,567 | INFO     | . initial setup = 4 s
[2026-03-09 19:14:58] 2026-03-09 18:14:14,567 | INFO     | . payload setup = 4 s
[2026-03-09 19:14:58] 2026-03-09 18:14:14,567 | INFO     | . stage-in = 0 s
[2026-03-09 19:14:58] 2026-03-09 18:14:14,567 | INFO     | . payload execution = 4867 s
[2026-03-09 19:14:58] 2026-03-09 18:14:14,567 | INFO     | . stage-out = 0 s
[2026-03-09 19:14:58] 2026-03-09 18:14:14,567 | INFO     | . log creation = 0 s
[2026-03-09 19:14:58] 2026-03-09 18:14:14,567 | INFO     | ..............................
[2026-03-09 19:14:58] 2026-03-09 18:14:14,793 | INFO     | 
[2026-03-09 19:14:58] 2026-03-09 18:14:14,793 | INFO     | job summary report
[2026-03-09 19:14:58] 2026-03-09 18:14:14,793 | INFO     | --------------------------------------------------
[2026-03-09 19:14:58] 2026-03-09 18:14:14,793 | INFO     | PanDA job id: 7040860096
[2026-03-09 19:14:58] 2026-03-09 18:14:14,793 | INFO     | task id: 48955010
[2026-03-09 19:14:58] 2026-03-09 18:14:14,793 | INFO     | errors: (none)
[2026-03-09 19:14:58] 2026-03-09 18:14:14,793 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-09 19:14:58] 2026-03-09 18:14:14,793 | INFO     | pilot state: finished 
[2026-03-09 19:14:58] 2026-03-09 18:14:14,793 | INFO     | transexitcode: 0
[2026-03-09 19:14:58] 2026-03-09 18:14:14,793 | INFO     | exeerrorcode: 0
[2026-03-09 19:14:58] 2026-03-09 18:14:14,793 | INFO     | exeerrordiag: 
[2026-03-09 19:14:58] 2026-03-09 18:14:14,793 | INFO     | exitcode: 0
[2026-03-09 19:14:58] 2026-03-09 18:14:14,793 | INFO     | exitmsg: OK
[2026-03-09 19:14:58] 2026-03-09 18:14:14,793 | INFO     | cpuconsumptiontime: 18647 s
[2026-03-09 19:14:58] 2026-03-09 18:14:14,793 | INFO     | nevents: 400
[2026-03-09 19:14:58] 2026-03-09 18:14:14,793 | INFO     | neventsw: 0
[2026-03-09 19:14:58] 2026-03-09 18:14:14,793 | INFO     | pid: 1012568
[2026-03-09 19:14:58] 2026-03-09 18:14:14,793 | INFO     | pgrp: 1012568
[2026-03-09 19:14:58] 2026-03-09 18:14:14,793 | INFO     | corecount: 4
[2026-03-09 19:14:58] 2026-03-09 18:14:14,793 | INFO     | event service: False
[2026-03-09 19:14:58] 2026-03-09 18:14:14,794 | INFO     | sizes: {0: 2280190, 11: 2280190, 4875: 2306531, 4876: 2315551, 4878: 2315607, 4879: 2315801}
[2026-03-09 19:14:58] 2026-03-09 18:14:14,794 | INFO     | --------------------------------------------------
[2026-03-09 19:14:58] 2026-03-09 18:14:14,794 | INFO     | 
[2026-03-09 19:14:58] 2026-03-09 18:14:14,794 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot16/slots/2
[2026-03-09 19:14:58] 2026-03-09 18:14:14,815 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-09 19:14:58] 2026-03-09 18:14:14,815 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-09 19:14:58] 2026-03-09 18:14:14,815 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-09 19:14:58] 2026-03-09 18:14:14,815 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-09 19:14:58] 2026-03-09 18:14:14,815 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-09 19:14:58] 2026-03-09 18:14:14,815 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-09 19:14:58] 2026-03-09 18:14:14,815 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-09 19:14:58] 2026-03-09 18:14:14,815 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-09 19:14:58] 2026-03-09 18:14:14,816 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-09 19:14:58] 2026-03-09 18:14:14,816 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-09 19:14:58] 2026-03-09 18:14:14,816 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-09 19:14:58] 2026-03-09 18:14:14,816 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-09 19:14:58] 2026-03-09 18:14:14,816 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-09 19:14:58] 2026-03-09 18:14:14,816 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-09 19:14:58] 2026-03-09 18:14:14,816 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-09 19:14:58] 2026-03-09 18:14:14,816 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-09 19:14:58] 2026-03-09 18:14:14,816 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-09 19:14:58] 2026-03-09 18:14:14,816 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-09 19:14:58] 2026-03-09 18:14:14,816 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-09 19:14:58] 2026-03-09 18:14:14,816 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-09 19:14:58] 2026-03-09 18:14:14,816 | INFO     | job 7040860096 has completed (purged errors)
[2026-03-09 19:14:58] 2026-03-09 18:14:14,816 | INFO     | overall cleanup function is called
[2026-03-09 19:14:58] 2026-03-09 18:14:15,823 | INFO     | --- collectZombieJob: --- 10, [1012568]
[2026-03-09 19:14:58] 2026-03-09 18:14:15,823 | INFO     | zombie collector waiting for pid 1012568
[2026-03-09 19:14:58] 2026-03-09 18:14:15,823 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-09 19:14:58] 2026-03-09 18:14:15,826 | INFO     | collected zombie processes
[2026-03-09 19:14:58] 2026-03-09 18:14:15,826 | INFO     | will attempt to kill all subprocesses of pid=1012568
[2026-03-09 19:14:58] 2026-03-09 18:14:16,282 | INFO     | process IDs to be killed: [1012568] (in reverse order)
[2026-03-09 19:14:58] 2026-03-09 18:14:16,491 | WARNING  | found no corresponding commands to process id(s)
[2026-03-09 19:14:58] 2026-03-09 18:14:16,491 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-09 19:14:58] 2026-03-09 18:14:16,515 | INFO     | did not find any defunct processes belonging to 1012568
[2026-03-09 19:14:58] 2026-03-09 18:14:16,540 | INFO     | did not find any defunct processes belonging to 1012568
[2026-03-09 19:14:58] 2026-03-09 18:14:16,540 | INFO     | ready for new job
[2026-03-09 19:14:58] 2026-03-09 18:14:16,540 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-09 19:14:58] 2026-03-09 18:14:16,542 | INFO     | **************************************
[2026-03-09 19:14:58] 2026-03-09 18:14:16,544 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-09 19:14:58] 2026-03-09 18:14:16,544 | INFO     | **************************************
[2026-03-09 19:14:58] 2026-03-09 18:14:16,544 | INFO     | 
[2026-03-09 19:14:58] 2026-03-09 18:14:16,551 | INFO     | architecture information:
[2026-03-09 19:14:58] 2026-03-09 18:14:16,551 | INFO     | executing command: cat /etc/os-release
[2026-03-09 19:14:58] 2026-03-09 18:14:16,564 | INFO     | cat /etc/os-release:
[2026-03-09 19:14:58] NAME="CentOS Linux"
[2026-03-09 19:14:58] VERSION="7 (Core)"
[2026-03-09 19:14:58] ID="centos"
[2026-03-09 19:14:58] ID_LIKE="rhel fedora"
[2026-03-09 19:14:58] VERSION_ID="7"
[2026-03-09 19:14:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-09 19:14:58] ANSI_COLOR="0;31"
[2026-03-09 19:14:58] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-09 19:14:58] HOME_URL="https://www.centos.org/"
[2026-03-09 19:14:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-09 19:14:58] 
[2026-03-09 19:14:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-09 19:14:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-09 19:14:58] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-09 19:14:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-09 19:14:58] 
[2026-03-09 19:14:58] 2026-03-09 18:14:16,565 | INFO     | **************************************
[2026-03-09 19:14:58] 2026-03-09 18:14:17,067 | INFO     | executing command: df -mP /var/lib/boinc/var/slot16/slots/2
[2026-03-09 19:14:58] 2026-03-09 18:14:17,083 | INFO     | sufficient remaining disk space (24544018432 B)
[2026-03-09 19:14:58] 2026-03-09 18:14:17,084 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-09 19:14:58] 2026-03-09 18:14:17,084 | INFO     | current server update state: UPDATING_FINAL
[2026-03-09 19:14:58] 2026-03-09 18:14:17,084 | INFO     | update_server=False
[2026-03-09 19:14:58] 2026-03-09 18:14:17,084 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-09 19:14:58] 2026-03-09 18:14:17,084 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-09 19:14:58] 2026-03-09 18:14:17,084 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-09 19:14:58] 2026-03-09 18:14:17,084 | INFO     | aborting loop
[2026-03-09 19:14:58] 2026-03-09 18:14:17,217 | INFO     | all job control threads have been joined
[2026-03-09 19:14:58] 2026-03-09 18:14:17,700 | INFO     | all payload control threads have been joined
[2026-03-09 19:14:58] 2026-03-09 18:14:17,921 | INFO     | all data control threads have been joined
[2026-03-09 19:14:58] 2026-03-09 18:14:18,089 | INFO     | [job] retrieve thread has finished
[2026-03-09 19:14:58] 2026-03-09 18:14:18,090 | INFO     | [job] job monitor thread has finished
[2026-03-09 19:14:58] 2026-03-09 18:14:18,199 | INFO     | [payload] validate_post thread has finished
[2026-03-09 19:14:58] 2026-03-09 18:14:18,223 | INFO     | [job] control thread has finished
[2026-03-09 19:14:58] 2026-03-09 18:14:18,702 | INFO     | [payload] failed_post thread has finished
[2026-03-09 19:14:58] 2026-03-09 18:14:18,706 | INFO     | [payload] control thread has finished
[2026-03-09 19:14:58] 2026-03-09 18:14:18,927 | INFO     | [data] control thread has finished
[2026-03-09 19:14:58] 2026-03-09 18:14:18,988 | INFO     | [job] validate thread has finished
[2026-03-09 19:14:58] 2026-03-09 18:14:18,994 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-09 19:14:58] 2026-03-09 18:14:19,090 | INFO     | [data] copytool_out thread has finished
[2026-03-09 19:14:58] 2026-03-09 18:14:19,233 | INFO     | [payload] execute_payloads thread has finished
[2026-03-09 19:14:58] 2026-03-09 18:14:19,362 | INFO     | [job] create_data_payload thread has finished
[2026-03-09 19:14:58] 2026-03-09 18:14:19,437 | INFO     | [payload] validate_pre thread has finished
[2026-03-09 19:14:58] 2026-03-09 18:14:19,513 | INFO     | [data] copytool_in thread has finished
[2026-03-09 19:14:58] 2026-03-09 18:14:19,623 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-09 19:14:58] 2026-03-09 18:14:20,629 | INFO     | [job] queue monitor thread has finished
[2026-03-09 19:14:58] 2026-03-09 18:14:23,000 | INFO     | [data] queue_monitor thread has finished
[2026-03-09 19:14:58] 2026-03-09 18:14:28,067 | INFO     | job.realtimelogging is not enabled
[2026-03-09 19:14:58] 2026-03-09 18:14:29,073 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-09 19:14:58] 2026-03-09 18:14:46,404 | INFO     | PID=1006671 has CPU usage=6.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-09 19:14:58] 2026-03-09 18:14:46,404 | INFO     | .. there are 61 such processes running
[2026-03-09 19:14:58] 2026-03-09 18:14:46,404 | INFO     | found 0 job(s) in 20 queues
[2026-03-09 19:14:58] 2026-03-09 18:14:46,404 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-09 19:14:58] 2026-03-09 18:14:46,404 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-09 19:14:58] 2026-03-09 18:14:51,908 | INFO     | [monitor] cgroup control has ended
[2026-03-09 19:14:58] 2026-03-09 18:14:52,870 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22582062933824)>', '<ExcThread(monitor, started 22581811070720)>']
[2026-03-09 19:14:58] 2026-03-09 18:14:53,442 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-09 19:14:58] 2026-03-09 18:14:53,443 | INFO     | [monitor] control thread has ended
[2026-03-09 19:14:58] 2026-03-09 18:14:57,894 | INFO     | all workflow threads have been joined
[2026-03-09 19:14:58] 2026-03-09 18:14:57,895 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-09 19:14:58] 2026-03-09 18:14:57,895 | INFO     | traces error code: 0
[2026-03-09 19:14:58] 2026-03-09 18:14:57,895 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-09 19:14:58] 2026-03-09 18:14:58,011 [wrapper] ==== pilot stdout END ====
[2026-03-09 19:14:58] 2026-03-09 18:14:58,013 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-09 19:14:58] 2026-03-09 18:14:58,015 [wrapper] pilotpid: 1006671
[2026-03-09 19:14:58] 2026-03-09 18:14:58,018 [wrapper] Pilot exit status: 0
[2026-03-09 19:14:58] 2026-03-09 18:14:58,027 [wrapper] pandaids: 7040860096
[2026-03-09 19:14:58] 2026-03-09 18:14:58,144 [wrapper] cleanup supervisor_pilot 1800715 1006672
[2026-03-09 19:14:58] 2026-03-09 18:14:58,147 [wrapper] Test setup, not cleaning
[2026-03-09 19:14:58] 2026-03-09 18:14:58,149 [wrapper] apfmon messages muted
[2026-03-09 19:14:58] 2026-03-09 18:14:58,152 [wrapper] ==== wrapper stdout END ====
[2026-03-09 19:14:58] 2026-03-09 18:14:58,154 [wrapper] ==== wrapper stderr END ====
[2026-03-09 19:14:58]  *** Error codes and diagnostics ***
[2026-03-09 19:14:58]     "exeErrorCode": 0,
[2026-03-09 19:14:58]     "exeErrorDiag": "",
[2026-03-09 19:14:58]     "pilotErrorCode": 0,
[2026-03-09 19:14:58]     "pilotErrorDiag": "",
[2026-03-09 19:14:58]  *** Listing of results directory ***
[2026-03-09 19:14:58] total 612532
[2026-03-09 19:14:58] -rw-r--r--. 1 boinc boinc    602657 Feb  3 12:11 pilot3.tar.gz
[2026-03-09 19:14:58] -rwx------. 1 boinc boinc     36322 Mar  9 14:05 runpilot2-wrapper.sh
[2026-03-09 19:14:58] -rw-r--r--. 1 boinc boinc      5111 Mar  9 14:06 queuedata.json
[2026-03-09 19:14:58] -rw-r--r--. 1 boinc boinc       100 Mar  9 17:52 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-09 19:14:58] -rwxr-xr-x. 1 boinc boinc      7986 Mar  9 17:52 run_atlas
[2026-03-09 19:14:58] -rw-r--r--. 1 boinc boinc       105 Mar  9 17:52 job.xml
[2026-03-09 19:14:58] -rw-r--r--. 2 boinc boinc     15845 Mar  9 17:52 start_atlas.sh
[2026-03-09 19:14:58] drwxrwx--x. 2 boinc boinc      4096 Mar  9 17:52 shared
[2026-03-09 19:14:58] -rw-r--r--. 2 boinc boinc    616313 Mar  9 17:52 input.tar.gz
[2026-03-09 19:14:58] -rw-r--r--. 1 boinc boinc      6698 Mar  9 17:52 init_data.xml
[2026-03-09 19:14:58] -rw-r--r--. 2 boinc boinc 439462687 Mar  9 17:52 EVNT.46701403._001360.pool.root.1
[2026-03-09 19:14:58] -rw-r--r--. 1 boinc boinc         0 Mar  9 17:52 boinc_lockfile
[2026-03-09 19:14:58] -rw-r--r--. 1 boinc boinc      2563 Mar  9 17:52 pandaJob.out
[2026-03-09 19:14:58] -rw-------. 1 boinc boinc   1002608 Mar  9 17:52 agis_schedconf.cvmfs.json
[2026-03-09 19:14:58] -rw-------. 1 boinc boinc   1511578 Mar  9 17:52 agis_ddmendpoints.agis.ALL.json
[2026-03-09 19:14:58] -rw-------. 1 boinc boinc       442 Mar  9 17:52 workernode_map.json
[2026-03-09 19:14:58] drwx------. 7 boinc boinc      4096 Mar  9 17:52 pilot3
[2026-03-09 19:14:58] -rw-r--r--. 1 boinc boinc       530 Mar  9 19:13 boinc_task_state.xml
[2026-03-09 19:14:58] -rw-------. 1 boinc boinc 181788629 Mar  9 19:13 HITS.48955010._018024.pool.root.1
[2026-03-09 19:14:58] -rw-------. 1 boinc boinc      1029 Mar  9 19:14 memory_monitor_summary.json
[2026-03-09 19:14:58] -rw-------. 1 boinc boinc    285559 Mar  9 19:14 log.48955010._018024.job.log.tgz.1
[2026-03-09 19:14:58] -rw-------. 1 boinc boinc        95 Mar  9 19:14 pilot_heartbeat.json
[2026-03-09 19:14:58] -rw-------. 1 boinc boinc      6354 Mar  9 19:14 heartbeat.json
[2026-03-09 19:14:58] -rw-r--r--. 1 boinc boinc      8192 Mar  9 19:14 boinc_mmap_file
[2026-03-09 19:14:58] -rw-r--r--. 1 boinc boinc        27 Mar  9 19:14 wrapper_checkpoint.txt
[2026-03-09 19:14:58] -rw-------. 1 boinc boinc      4901 Mar  9 19:14 pilotlog.txt
[2026-03-09 19:14:58] -rw-------. 1 boinc boinc    719007 Mar  9 19:14 log.48955010._018024.job.log.1
[2026-03-09 19:14:58] -rw-------. 1 boinc boinc       357 Mar  9 19:14 output.list
[2026-03-09 19:14:58] -rw-r--r--. 1 boinc boinc       620 Mar  9 19:14 runtime_log
[2026-03-09 19:14:58] -rw-------. 1 boinc boinc   1024000 Mar  9 19:14 result.tar.gz
[2026-03-09 19:14:58] -rw-r--r--. 1 boinc boinc      9204 Mar  9 19:14 runtime_log.err
[2026-03-09 19:14:58] -rw-------. 1 boinc boinc       662 Mar  9 19:14 FS3LDm1TpJ9n9Rq4apOajLDm4fhM0noT9bVooX4SDmDuZLDmG8zWln.diag
[2026-03-09 19:14:58] -rw-r--r--. 1 boinc boinc     21140 Mar  9 19:14 stderr.txt
[2026-03-09 19:14:58] HITS file was successfully produced:
[2026-03-09 19:14:58] -rw-------. 1 boinc boinc 181788629 Mar  9 19:13 shared/HITS.pool.root.1
[2026-03-09 19:14:58]  *** Contents of shared directory: ***
[2026-03-09 19:14:58] total 608320
[2026-03-09 19:14:58] -rw-r--r--. 2 boinc boinc     15845 Mar  9 17:52 start_atlas.sh
[2026-03-09 19:14:58] -rw-r--r--. 2 boinc boinc    616313 Mar  9 17:52 input.tar.gz
[2026-03-09 19:14:58] -rw-r--r--. 2 boinc boinc 439462687 Mar  9 17:52 ATLAS.root_0
[2026-03-09 19:14:58] -rw-------. 1 boinc boinc 181788629 Mar  9 19:13 HITS.pool.root.1
[2026-03-09 19:14:58] -rw-------. 1 boinc boinc   1024000 Mar  9 19:14 result.tar.gz
19:14:59 (1001942): run_atlas exited; CPU time 18855.773370
19:14:59 (1001942): called boinc_finish(0)

</stderr_txt>
]]>

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