Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:09:48 (1510171): wrapper (7.7.26015): starting
04:09:48 (1510171): wrapper: running run_atlas (--nthreads 4)
[2026-03-10 04:09:48] Arguments: --nthreads 4
[2026-03-10 04:09:48] Threads: 4
[2026-03-10 04:09:48] Checking for CVMFS
[2026-03-10 04:09:48] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-10 04:09:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-10 04:09:48] Running cvmfs_config stat atlas.cern.ch
[2026-03-10 04:09:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-10 04:09:48] 2.9.2.0 3039 8308 101192 157098 1 55 29561650 36864000 0 130560 0 4224288 99.987 304559 11324 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-10 04:09:48] CVMFS is ok
[2026-03-10 04:09:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-10 04:09:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-10 04:09:48] Further information can be found at the LHC@home message board.
[2026-03-10 04:09:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-10 04:09:48] Checking for apptainer binary...
[2026-03-10 04:09:48] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-10 04:09:48] Running /usr/bin/apptainer --version
[2026-03-10 04:09:48] apptainer version 1.4.1-1.1
[2026-03-10 04:09:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-10 04:09:48] thA334
[2026-03-10 04:09:48] apptainer works
[2026-03-10 04:09:48] Set ATHENA_PROC_NUMBER=4
[2026-03-10 04:09:48] Set ATHENA_CORE_NUMBER=4
[2026-03-10 04:09:48] Starting ATLAS job with PandaID=7047316305
[2026-03-10 04:09:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-10 05:57:13]  *** The last 200 lines of the pilot log: ***
[2026-03-10 05:57:13] 2026-03-10 04:56:35,938 | INFO     | number of running child processes to parent process 1518797: 1
[2026-03-10 05:57:13] 2026-03-10 04:56:35,938 | INFO     | maximum number of monitored processes: 6
[2026-03-10 05:57:13] 2026-03-10 04:56:35,938 | INFO     | aborting job monitoring since job object (job id=7047316305) has expired
[2026-03-10 05:57:13] 2026-03-10 04:56:36,840 | INFO     | --- collectZombieJob: --- 10, [1518797]
[2026-03-10 05:57:13] 2026-03-10 04:56:36,840 | INFO     | zombie collector waiting for pid 1518797
[2026-03-10 05:57:13] 2026-03-10 04:56:36,840 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-10 05:57:13] 2026-03-10 04:56:36,841 | INFO     | collected zombie processes
[2026-03-10 05:57:13] 2026-03-10 04:56:36,841 | INFO     | will attempt to kill all subprocesses of pid=1518797
[2026-03-10 05:57:13] 2026-03-10 04:56:36,881 | INFO     | process IDs to be killed: [1518797] (in reverse order)
[2026-03-10 05:57:13] 2026-03-10 04:56:36,913 | WARNING  | found no corresponding commands to process id(s)
[2026-03-10 05:57:13] 2026-03-10 04:56:36,913 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-10 05:57:13] 2026-03-10 04:56:36,914 | INFO     | did not find any defunct processes belonging to 1518797
[2026-03-10 05:57:13] 2026-03-10 04:56:36,915 | INFO     | did not find any defunct processes belonging to 1518797
[2026-03-10 05:57:13] 2026-03-10 04:56:36,915 | INFO     | ready for new job
[2026-03-10 05:57:13] 2026-03-10 04:56:36,915 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-10 05:57:13] 2026-03-10 04:56:36,916 | INFO     | **************************************
[2026-03-10 05:57:13] 2026-03-10 04:56:36,916 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-10 05:57:13] 2026-03-10 04:56:36,916 | INFO     | **************************************
[2026-03-10 05:57:13] 2026-03-10 04:56:36,916 | INFO     | 
[2026-03-10 05:57:13] 2026-03-10 04:56:36,917 | INFO     | architecture information:
[2026-03-10 05:57:13] 2026-03-10 04:56:36,917 | INFO     | executing command: cat /etc/os-release
[2026-03-10 05:57:13] 2026-03-10 04:56:36,930 | INFO     | cat /etc/os-release:
[2026-03-10 05:57:13] NAME="CentOS Linux"
[2026-03-10 05:57:13] VERSION="7 (Core)"
[2026-03-10 05:57:13] ID="centos"
[2026-03-10 05:57:13] ID_LIKE="rhel fedora"
[2026-03-10 05:57:13] VERSION_ID="7"
[2026-03-10 05:57:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-10 05:57:13] ANSI_COLOR="0;31"
[2026-03-10 05:57:13] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-10 05:57:13] HOME_URL="https://www.centos.org/"
[2026-03-10 05:57:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-10 05:57:13] 
[2026-03-10 05:57:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-10 05:57:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-10 05:57:13] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-10 05:57:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-10 05:57:13] 
[2026-03-10 05:57:13] 2026-03-10 04:56:36,930 | INFO     | **************************************
[2026-03-10 05:57:13] 2026-03-10 04:56:37,433 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-10 05:57:13] 2026-03-10 04:56:37,451 | INFO     | sufficient remaining disk space (227861856256 B)
[2026-03-10 05:57:13] 2026-03-10 04:56:37,451 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-10 05:57:13] 2026-03-10 04:56:37,451 | INFO     | current server update state: UPDATING_FINAL
[2026-03-10 05:57:13] 2026-03-10 04:56:37,451 | INFO     | update_server=False
[2026-03-10 05:57:13] 2026-03-10 04:56:37,451 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-10 05:57:13] 2026-03-10 04:56:37,451 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-10 05:57:13] 2026-03-10 04:56:37,451 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-10 05:57:13] 2026-03-10 04:56:37,451 | INFO     | aborting loop
[2026-03-10 05:57:13] 2026-03-10 04:56:37,483 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-10 05:57:13] 2026-03-10 04:56:37,624 | INFO     | all data control threads have been joined
[2026-03-10 05:57:13] 2026-03-10 04:56:37,724 | INFO     | all job control threads have been joined
[2026-03-10 05:57:13] 2026-03-10 04:56:38,417 | INFO     | all payload control threads have been joined
[2026-03-10 05:57:13] 2026-03-10 04:56:38,457 | INFO     | [job] retrieve thread has finished
[2026-03-10 05:57:13] 2026-03-10 04:56:38,457 | INFO     | [job] queue monitor thread has finished
[2026-03-10 05:57:13] 2026-03-10 04:56:38,457 | INFO     | [job] job monitor thread has finished
[2026-03-10 05:57:13] 2026-03-10 04:56:38,629 | INFO     | [data] control thread has finished
[2026-03-10 05:57:13] 2026-03-10 04:56:38,730 | INFO     | [job] control thread has finished
[2026-03-10 05:57:13] 2026-03-10 04:56:38,799 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-10 05:57:13] 2026-03-10 04:56:38,930 | INFO     | [job] validate thread has finished
[2026-03-10 05:57:13] 2026-03-10 04:56:38,996 | INFO     | [job] create_data_payload thread has finished
[2026-03-10 05:57:13] 2026-03-10 04:56:39,038 | INFO     | [payload] execute_payloads thread has finished
[2026-03-10 05:57:13] 2026-03-10 04:56:39,143 | INFO     | [payload] validate_pre thread has finished
[2026-03-10 05:57:13] 2026-03-10 04:56:39,310 | INFO     | [data] copytool_in thread has finished
[2026-03-10 05:57:13] 2026-03-10 04:56:39,423 | INFO     | [payload] control thread has finished
[2026-03-10 05:57:13] 2026-03-10 04:56:39,489 | INFO     | [data] copytool_out thread has finished
[2026-03-10 05:57:13] 2026-03-10 04:56:39,674 | INFO     | [payload] validate_post thread has finished
[2026-03-10 05:57:13] 2026-03-10 04:56:39,903 | INFO     | [payload] failed_post thread has finished
[2026-03-10 05:57:13] 2026-03-10 04:56:42,806 | INFO     | [data] queue_monitor thread has finished
[2026-03-10 05:57:13] 2026-03-10 04:56:47,874 | INFO     | job.realtimelogging is not enabled
[2026-03-10 05:57:13] 2026-03-10 04:56:48,879 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-10 05:57:13] 2026-03-10 04:57:07,520 | INFO     | [monitor] cgroup control has ended
[2026-03-10 05:57:13] 2026-03-10 04:57:07,577 | INFO     | PID=1514295 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-10 05:57:13] 2026-03-10 04:57:07,577 | INFO     | found 0 job(s) in 20 queues
[2026-03-10 05:57:13] 2026-03-10 04:57:07,577 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-10 05:57:13] 2026-03-10 04:57:07,577 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-10 05:57:13] 2026-03-10 04:57:08,156 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140344624994112)>', '<ExcThread(monitor, started 140343550928640)>']
[2026-03-10 05:57:13] 2026-03-10 04:57:08,582 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-10 05:57:13] 2026-03-10 04:57:08,583 | INFO     | [monitor] control thread has ended
[2026-03-10 05:57:13] 2026-03-10 04:57:13,182 | INFO     | all workflow threads have been joined
[2026-03-10 05:57:13] 2026-03-10 04:57:13,182 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-10 05:57:13] 2026-03-10 04:57:13,182 | INFO     | traces error code: 0
[2026-03-10 05:57:13] 2026-03-10 04:57:13,183 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-10 05:57:13] 2026-03-10 04:57:13,250 [wrapper] ==== pilot stdout END ====
[2026-03-10 05:57:13] 2026-03-10 04:57:13,253 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-10 05:57:13] 2026-03-10 04:57:13,257 [wrapper] pilotpid: 1514295
[2026-03-10 05:57:13] 2026-03-10 04:57:13,261 [wrapper] Pilot exit status: 0
[2026-03-10 05:57:13] 2026-03-10 04:57:13,272 [wrapper] pandaids: 7047316305
[2026-03-10 05:57:13] 2026-03-10 04:57:13,292 [wrapper] cleanup supervisor_pilot 1524406 1514296
[2026-03-10 05:57:13] 2026-03-10 04:57:13,295 [wrapper] Test setup, not cleaning
[2026-03-10 05:57:13] 2026-03-10 04:57:13,299 [wrapper] apfmon messages muted
[2026-03-10 05:57:13] 2026-03-10 04:57:13,303 [wrapper] ==== wrapper stdout END ====
[2026-03-10 05:57:13] 2026-03-10 04:57:13,306 [wrapper] ==== wrapper stderr END ====
[2026-03-10 05:57:13]  *** Error codes and diagnostics ***
[2026-03-10 05:57:13]     "exeErrorCode": 0,
[2026-03-10 05:57:13]     "exeErrorDiag": "",
[2026-03-10 05:57:13]     "pilotErrorCode": 0,
[2026-03-10 05:57:13]     "pilotErrorDiag": "",
[2026-03-10 05:57:13]  *** Listing of results directory ***
[2026-03-10 05:57:13] total 639952
[2026-03-10 05:57:13] -rw-r--r-- 1 boinc boinc    584627 Mar  9 14:02 pilot3.tar.gz
[2026-03-10 05:57:13] -rwx------ 1 boinc boinc     36322 Mar  9 14:05 runpilot2-wrapper.sh
[2026-03-10 05:57:13] -rw-r--r-- 1 boinc boinc      5111 Mar  9 14:06 queuedata.json
[2026-03-10 05:57:13] -rw-r--r-- 1 boinc boinc       100 Mar 10 04:09 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-10 05:57:13] -rwxr-xr-x 1 boinc boinc      7986 Mar 10 04:09 run_atlas
[2026-03-10 05:57:13] -rw-r--r-- 1 boinc boinc       105 Mar 10 04:09 job.xml
[2026-03-10 05:57:13] -rw-r--r-- 2 boinc boinc 360217886 Mar 10 04:09 EVNT.48998030._000029.pool.root.1
[2026-03-10 05:57:13] drwxrwx--x 2 boinc boinc      4096 Mar 10 04:09 shared
[2026-03-10 05:57:13] -rw-r--r-- 2 boinc boinc    597939 Mar 10 04:09 input.tar.gz
[2026-03-10 05:57:13] -rw-r--r-- 2 boinc boinc     15845 Mar 10 04:09 start_atlas.sh
[2026-03-10 05:57:13] -rw-r--r-- 1 boinc boinc         0 Mar 10 04:09 boinc_setup_complete
[2026-03-10 05:57:13] -rw-r--r-- 1 boinc boinc      6369 Mar 10 04:09 init_data.xml
[2026-03-10 05:57:13] -rw-r--r-- 1 boinc boinc         0 Mar 10 04:09 boinc_lockfile
[2026-03-10 05:57:13] -rw-r--r-- 1 boinc boinc      2559 Mar 10 04:09 pandaJob.out
[2026-03-10 05:57:13] -rw------- 1 boinc boinc   1002338 Mar 10 04:09 agis_schedconf.cvmfs.json
[2026-03-10 05:57:13] -rw------- 1 boinc boinc   1511578 Mar 10 04:09 agis_ddmendpoints.agis.ALL.json
[2026-03-10 05:57:13] -rw------- 1 boinc boinc       427 Mar 10 04:10 workernode_map.json
[2026-03-10 05:57:13] drwx------ 5 boinc boinc      4096 Mar 10 04:10 pilot3
[2026-03-10 05:57:13] -rw-r--r-- 1 boinc boinc       530 Mar 10 05:56 boinc_task_state.xml
[2026-03-10 05:57:13] -rw------- 1 boinc boinc 288759381 Mar 10 05:56 HITS.48998032._000706.pool.root.1
[2026-03-10 05:57:13] -rw------- 1 boinc boinc      1021 Mar 10 05:56 memory_monitor_summary.json
[2026-03-10 05:57:13] -rw------- 1 boinc boinc    282192 Mar 10 05:56 log.48998032._000706.job.log.tgz.1
[2026-03-10 05:57:13] -rw------- 1 boinc boinc        95 Mar 10 05:56 pilot_heartbeat.json
[2026-03-10 05:57:13] -rw------- 1 boinc boinc      6301 Mar 10 05:56 heartbeat.json
[2026-03-10 05:57:13] -rw-r--r-- 1 boinc boinc      8192 Mar 10 05:56 boinc_mmap_file
[2026-03-10 05:57:13] -rw-r--r-- 1 boinc boinc        27 Mar 10 05:56 wrapper_checkpoint.txt
[2026-03-10 05:57:13] -rw------- 1 boinc boinc      4820 Mar 10 05:57 pilotlog.txt
[2026-03-10 05:57:13] -rw------- 1 boinc boinc    925511 Mar 10 05:57 log.48998032._000706.job.log.1
[2026-03-10 05:57:13] -rw------- 1 boinc boinc       357 Mar 10 05:57 output.list
[2026-03-10 05:57:13] -rw-r--r-- 1 boinc boinc       620 Mar 10 05:57 runtime_log
[2026-03-10 05:57:13] -rw------- 1 boinc boinc   1228800 Mar 10 05:57 result.tar.gz
[2026-03-10 05:57:13] -rw------- 1 boinc boinc       657 Mar 10 05:57 uLiNDmtTpJ9n9Rq4apOajLDm4fhM0noT9bVooX4SDmhsZLDmzZ1N3m.diag
[2026-03-10 05:57:13] -rw-r--r-- 1 boinc boinc      8896 Mar 10 05:57 runtime_log.err
[2026-03-10 05:57:13] -rw-r--r-- 1 boinc boinc     11057 Mar 10 05:57 stderr.txt
[2026-03-10 05:57:13] HITS file was successfully produced:
[2026-03-10 05:57:13] -rw------- 1 boinc boinc 288759381 Mar 10 05:56 shared/HITS.pool.root.1
[2026-03-10 05:57:13]  *** Contents of shared directory: ***
[2026-03-10 05:57:13] total 635576
[2026-03-10 05:57:13] -rw-r--r-- 2 boinc boinc 360217886 Mar 10 04:09 ATLAS.root_0
[2026-03-10 05:57:13] -rw-r--r-- 2 boinc boinc    597939 Mar 10 04:09 input.tar.gz
[2026-03-10 05:57:13] -rw-r--r-- 2 boinc boinc     15845 Mar 10 04:09 start_atlas.sh
[2026-03-10 05:57:13] -rw------- 1 boinc boinc 288759381 Mar 10 05:56 HITS.pool.root.1
[2026-03-10 05:57:13] -rw------- 1 boinc boinc   1228800 Mar 10 05:57 result.tar.gz
05:57:14 (1510171): run_atlas exited; CPU time 24412.430682
05:57:14 (1510171): called boinc_finish(0)

</stderr_txt>
]]>

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