Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:19:22 (1342686): wrapper (7.7.26015): starting
23:19:22 (1342686): wrapper: running run_atlas (--nthreads 4)
[2026-03-09 23:19:22] Arguments: --nthreads 4
[2026-03-09 23:19:22] Threads: 4
[2026-03-09 23:19:22] Checking for CVMFS
[2026-03-09 23:19:22] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-09 23:19:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-09 23:19:22] Running cvmfs_config stat atlas.cern.ch
[2026-03-09 23:19:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-09 23:19:22] 2.9.2.0 7007 7942 101596 157092 0 49 29823528 36864001 0 130560 0 3711962 99.986 290355 9636 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-09 23:19:22] CVMFS is ok
[2026-03-09 23:19:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-09 23:19:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-09 23:19:22] Further information can be found at the LHC@home message board.
[2026-03-09 23:19:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-09 23:19:22] Checking for apptainer binary...
[2026-03-09 23:19:22] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-09 23:19:22] Running /usr/bin/apptainer --version
[2026-03-09 23:19:23] apptainer version 1.4.1-1.1
[2026-03-09 23:19:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-09 23:19:23] thA332a
[2026-03-09 23:19:23] apptainer works
[2026-03-09 23:19:23] Set ATHENA_PROC_NUMBER=4
[2026-03-09 23:19:23] Set ATHENA_CORE_NUMBER=4
[2026-03-09 23:19:23] Starting ATLAS job with PandaID=7047073982
[2026-03-09 23:19:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-10 00:50:48]  *** The last 200 lines of the pilot log: ***
[2026-03-10 00:50:48] 2026-03-09 23:50:13,379 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-10 00:50:48] 2026-03-09 23:50:13,379 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-10 00:50:48] 2026-03-09 23:50:13,379 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-10 00:50:48] 2026-03-09 23:50:13,379 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-10 00:50:48] 2026-03-09 23:50:13,379 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-10 00:50:48] 2026-03-09 23:50:13,380 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-10 00:50:48] 2026-03-09 23:50:13,380 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-10 00:50:48] 2026-03-09 23:50:13,380 | INFO     | job 7047073982 has completed (purged errors)
[2026-03-10 00:50:48] 2026-03-09 23:50:13,380 | INFO     | overall cleanup function is called
[2026-03-10 00:50:48] 2026-03-09 23:50:14,386 | INFO     | --- collectZombieJob: --- 10, [1351304]
[2026-03-10 00:50:48] 2026-03-09 23:50:14,387 | INFO     | zombie collector waiting for pid 1351304
[2026-03-10 00:50:48] 2026-03-09 23:50:14,387 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-10 00:50:48] 2026-03-09 23:50:14,387 | INFO     | collected zombie processes
[2026-03-10 00:50:48] 2026-03-09 23:50:14,387 | INFO     | will attempt to kill all subprocesses of pid=1351304
[2026-03-10 00:50:48] 2026-03-09 23:50:14,428 | INFO     | process IDs to be killed: [1351304] (in reverse order)
[2026-03-10 00:50:48] 2026-03-09 23:50:14,460 | WARNING  | found no corresponding commands to process id(s)
[2026-03-10 00:50:48] 2026-03-09 23:50:14,460 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-10 00:50:48] 2026-03-09 23:50:14,462 | INFO     | did not find any defunct processes belonging to 1351304
[2026-03-10 00:50:48] 2026-03-09 23:50:14,463 | INFO     | did not find any defunct processes belonging to 1351304
[2026-03-10 00:50:48] 2026-03-09 23:50:14,463 | INFO     | ready for new job
[2026-03-10 00:50:48] 2026-03-09 23:50:14,463 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-10 00:50:48] 2026-03-09 23:50:14,464 | INFO     | **************************************
[2026-03-10 00:50:48] 2026-03-09 23:50:14,464 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-10 00:50:48] 2026-03-09 23:50:14,464 | INFO     | **************************************
[2026-03-10 00:50:48] 2026-03-09 23:50:14,464 | INFO     | 
[2026-03-10 00:50:48] 2026-03-09 23:50:14,465 | INFO     | architecture information:
[2026-03-10 00:50:48] 2026-03-09 23:50:14,465 | INFO     | executing command: cat /etc/os-release
[2026-03-10 00:50:48] 2026-03-09 23:50:14,479 | INFO     | cat /etc/os-release:
[2026-03-10 00:50:48] NAME="CentOS Linux"
[2026-03-10 00:50:48] VERSION="7 (Core)"
[2026-03-10 00:50:48] ID="centos"
[2026-03-10 00:50:48] ID_LIKE="rhel fedora"
[2026-03-10 00:50:48] VERSION_ID="7"
[2026-03-10 00:50:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-10 00:50:48] ANSI_COLOR="0;31"
[2026-03-10 00:50:48] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-10 00:50:48] HOME_URL="https://www.centos.org/"
[2026-03-10 00:50:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-10 00:50:48] 
[2026-03-10 00:50:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-10 00:50:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-10 00:50:48] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-10 00:50:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-10 00:50:48] 
[2026-03-10 00:50:48] 2026-03-09 23:50:14,479 | INFO     | **************************************
[2026-03-10 00:50:48] 2026-03-09 23:50:14,982 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-10 00:50:48] 2026-03-09 23:50:15,000 | INFO     | sufficient remaining disk space (328419246080 B)
[2026-03-10 00:50:48] 2026-03-09 23:50:15,000 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-10 00:50:48] 2026-03-09 23:50:15,000 | INFO     | current server update state: UPDATING_FINAL
[2026-03-10 00:50:48] 2026-03-09 23:50:15,000 | INFO     | update_server=False
[2026-03-10 00:50:48] 2026-03-09 23:50:15,000 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-10 00:50:48] 2026-03-09 23:50:15,000 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-10 00:50:48] 2026-03-09 23:50:15,000 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-10 00:50:48] 2026-03-09 23:50:15,208 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-10 00:50:48] 2026-03-09 23:50:15,208 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-10 00:50:48] 2026-03-09 23:50:15,209 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-10 00:50:48] 2026-03-09 23:50:15,209 | INFO     | will abort loop
[2026-03-10 00:50:48] 2026-03-09 23:50:15,459 | INFO     | all data control threads have been joined
[2026-03-10 00:50:48] 2026-03-09 23:50:15,915 | INFO     | all job control threads have been joined
[2026-03-10 00:50:48] 2026-03-09 23:50:16,001 | INFO     | [job] retrieve thread has finished
[2026-03-10 00:50:48] 2026-03-09 23:50:16,006 | INFO     | [job] queue monitor thread has finished
[2026-03-10 00:50:48] 2026-03-09 23:50:16,214 | INFO     | [job] job monitor thread has finished
[2026-03-10 00:50:48] 2026-03-09 23:50:16,396 | INFO     | all payload control threads have been joined
[2026-03-10 00:50:48] 2026-03-09 23:50:16,403 | INFO     | [payload] validate_post thread has finished
[2026-03-10 00:50:48] 2026-03-09 23:50:16,465 | INFO     | [data] control thread has finished
[2026-03-10 00:50:48] 2026-03-09 23:50:16,491 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-10 00:50:48] 2026-03-09 23:50:16,565 | INFO     | [job] validate thread has finished
[2026-03-10 00:50:48] 2026-03-09 23:50:16,673 | INFO     | [job] create_data_payload thread has finished
[2026-03-10 00:50:48] 2026-03-09 23:50:16,720 | INFO     | [payload] validate_pre thread has finished
[2026-03-10 00:50:48] 2026-03-09 23:50:16,910 | INFO     | [data] copytool_in thread has finished
[2026-03-10 00:50:48] 2026-03-09 23:50:16,921 | INFO     | [job] control thread has finished
[2026-03-10 00:50:48] 2026-03-09 23:50:16,980 | INFO     | [payload] execute_payloads thread has finished
[2026-03-10 00:50:48] 2026-03-09 23:50:17,402 | INFO     | [payload] control thread has finished
[2026-03-10 00:50:48] 2026-03-09 23:50:17,474 | INFO     | [payload] failed_post thread has finished
[2026-03-10 00:50:48] 2026-03-09 23:50:18,497 | INFO     | [data] copytool_out thread has finished
[2026-03-10 00:50:48] 2026-03-09 23:50:19,007 | INFO     | [data] queue_monitor thread has finished
[2026-03-10 00:50:48] 2026-03-09 23:50:25,114 | INFO     | job.realtimelogging is not enabled
[2026-03-10 00:50:48] 2026-03-09 23:50:26,120 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-10 00:50:48] 2026-03-09 23:50:42,326 | INFO     | [monitor] cgroup control has ended
[2026-03-10 00:50:48] 2026-03-09 23:50:43,769 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139650176538432)>', '<ExcThread(monitor, started 139649813030656)>']
[2026-03-10 00:50:48] 2026-03-09 23:50:45,298 | INFO     | PID=1346792 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-10 00:50:48] 2026-03-09 23:50:45,298 | INFO     | found 0 job(s) in 20 queues
[2026-03-10 00:50:48] 2026-03-09 23:50:45,298 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-10 00:50:48] 2026-03-09 23:50:45,298 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-10 00:50:48] 2026-03-09 23:50:45,298 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-10 00:50:48] 2026-03-09 23:50:45,298 | INFO     | [monitor] control thread has ended
[2026-03-10 00:50:48] 2026-03-09 23:50:48,795 | INFO     | all workflow threads have been joined
[2026-03-10 00:50:48] 2026-03-09 23:50:48,795 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-10 00:50:48] 2026-03-09 23:50:48,795 | INFO     | traces error code: 0
[2026-03-10 00:50:48] 2026-03-09 23:50:48,795 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-10 00:50:48] 2026-03-09 23:50:48,873 [wrapper] ==== pilot stdout END ====
[2026-03-10 00:50:48] 2026-03-09 23:50:48,877 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-10 00:50:48] 2026-03-09 23:50:48,881 [wrapper] pilotpid: 1346792
[2026-03-10 00:50:48] 2026-03-09 23:50:48,885 [wrapper] Pilot exit status: 0
[2026-03-10 00:50:48] 2026-03-09 23:50:48,897 [wrapper] pandaids: 7047073982
[2026-03-10 00:50:48] 2026-03-09 23:50:48,918 [wrapper] cleanup supervisor_pilot 1356983 1346793
[2026-03-10 00:50:48] 2026-03-09 23:50:48,921 [wrapper] Test setup, not cleaning
[2026-03-10 00:50:48] 2026-03-09 23:50:48,925 [wrapper] apfmon messages muted
[2026-03-10 00:50:48] 2026-03-09 23:50:48,929 [wrapper] ==== wrapper stdout END ====
[2026-03-10 00:50:48] 2026-03-09 23:50:48,932 [wrapper] ==== wrapper stderr END ====
[2026-03-10 00:50:48]  *** Error codes and diagnostics ***
[2026-03-10 00:50:48]     "exeErrorCode": 0,
[2026-03-10 00:50:48]     "exeErrorDiag": "",
[2026-03-10 00:50:48]     "pilotErrorCode": 0,
[2026-03-10 00:50:48]     "pilotErrorDiag": "",
[2026-03-10 00:50:48]  *** Listing of results directory ***
[2026-03-10 00:50:48] total 562536
[2026-03-10 00:50:48] -rw-r--r-- 1 boinc boinc    584627 Mar  9 08:59 pilot3.tar.gz
[2026-03-10 00:50:48] -rwx------ 1 boinc boinc     36322 Mar  9 09:02 runpilot2-wrapper.sh
[2026-03-10 00:50:48] -rw-r--r-- 1 boinc boinc      5111 Mar  9 09:05 queuedata.json
[2026-03-10 00:50:48] -rw-r--r-- 1 boinc boinc       100 Mar  9 23:19 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-10 00:50:48] -rwxr-xr-x 1 boinc boinc      7986 Mar  9 23:19 run_atlas
[2026-03-10 00:50:48] -rw-r--r-- 1 boinc boinc       105 Mar  9 23:19 job.xml
[2026-03-10 00:50:48] -rw-r--r-- 2 boinc boinc 328566157 Mar  9 23:19 EVNT.48998020._000017.pool.root.1
[2026-03-10 00:50:48] drwxrwx--x 2 boinc boinc      4096 Mar  9 23:19 shared
[2026-03-10 00:50:48] -rw-r--r-- 2 boinc boinc    597964 Mar  9 23:19 input.tar.gz
[2026-03-10 00:50:48] -rw-r--r-- 2 boinc boinc     15845 Mar  9 23:19 start_atlas.sh
[2026-03-10 00:50:48] -rw-r--r-- 1 boinc boinc         0 Mar  9 23:19 boinc_setup_complete
[2026-03-10 00:50:48] -rw-r--r-- 1 boinc boinc      6370 Mar  9 23:19 init_data.xml
[2026-03-10 00:50:48] -rw-r--r-- 1 boinc boinc         0 Mar  9 23:19 boinc_lockfile
[2026-03-10 00:50:48] -rw-r--r-- 1 boinc boinc      2609 Mar  9 23:19 pandaJob.out
[2026-03-10 00:50:48] -rw------- 1 boinc boinc   1002738 Mar  9 23:19 agis_schedconf.cvmfs.json
[2026-03-10 00:50:48] -rw------- 1 boinc boinc   1511578 Mar  9 23:19 agis_ddmendpoints.agis.ALL.json
[2026-03-10 00:50:48] -rw------- 1 boinc boinc       421 Mar  9 23:19 workernode_map.json
[2026-03-10 00:50:48] drwx------ 5 boinc boinc      4096 Mar  9 23:19 pilot3
[2026-03-10 00:50:48] -rw-r--r-- 1 boinc boinc       529 Mar 10 00:49 boinc_task_state.xml
[2026-03-10 00:50:48] -rw------- 1 boinc boinc 241427698 Mar 10 00:49 HITS.48998022._000408.pool.root.1
[2026-03-10 00:50:48] -rw------- 1 boinc boinc        95 Mar 10 00:49 pilot_heartbeat.json
[2026-03-10 00:50:48] -rw------- 1 boinc boinc      1020 Mar 10 00:50 memory_monitor_summary.json
[2026-03-10 00:50:48] -rw------- 1 boinc boinc    267159 Mar 10 00:50 log.48998022._000408.job.log.tgz.1
[2026-03-10 00:50:48] -rw------- 1 boinc boinc      6305 Mar 10 00:50 heartbeat.json
[2026-03-10 00:50:48] -rw-r--r-- 1 boinc boinc        27 Mar 10 00:50 wrapper_checkpoint.txt
[2026-03-10 00:50:48] -rw-r--r-- 1 boinc boinc      8192 Mar 10 00:50 boinc_mmap_file
[2026-03-10 00:50:48] -rw------- 1 boinc boinc      5006 Mar 10 00:50 pilotlog.txt
[2026-03-10 00:50:48] -rw------- 1 boinc boinc    793766 Mar 10 00:50 log.48998022._000408.job.log.1
[2026-03-10 00:50:48] -rw------- 1 boinc boinc       357 Mar 10 00:50 output.list
[2026-03-10 00:50:48] -rw-r--r-- 1 boinc boinc       620 Mar 10 00:50 runtime_log
[2026-03-10 00:50:48] -rw------- 1 boinc boinc   1075200 Mar 10 00:50 result.tar.gz
[2026-03-10 00:50:48] -rw-r--r-- 1 boinc boinc      8901 Mar 10 00:50 runtime_log.err
[2026-03-10 00:50:48] -rw------- 1 boinc boinc       658 Mar 10 00:50 E4sMDm0kkJ9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmLubLDmSkXdXm.diag
[2026-03-10 00:50:48] -rw-r--r-- 1 boinc boinc     11840 Mar 10 00:50 stderr.txt
[2026-03-10 00:50:48] HITS file was successfully produced:
[2026-03-10 00:50:49] -rw------- 1 boinc boinc 241427698 Mar 10 00:49 shared/HITS.pool.root.1
[2026-03-10 00:50:49]  *** Contents of shared directory: ***
[2026-03-10 00:50:49] total 558300
[2026-03-10 00:50:49] -rw-r--r-- 2 boinc boinc 328566157 Mar  9 23:19 ATLAS.root_0
[2026-03-10 00:50:49] -rw-r--r-- 2 boinc boinc    597964 Mar  9 23:19 input.tar.gz
[2026-03-10 00:50:49] -rw-r--r-- 2 boinc boinc     15845 Mar  9 23:19 start_atlas.sh
[2026-03-10 00:50:49] -rw------- 1 boinc boinc 241427698 Mar 10 00:49 HITS.pool.root.1
[2026-03-10 00:50:49] -rw------- 1 boinc boinc   1075200 Mar 10 00:50 result.tar.gz
00:50:50 (1342686): run_atlas exited; CPU time 20647.756356
00:50:50 (1342686): called boinc_finish(0)

</stderr_txt>
]]>

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