Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:31:23 (1875408): wrapper (7.7.26015): starting
21:31:23 (1875408): wrapper: running run_atlas (--nthreads 4)
[2026-03-09 21:31:23] Arguments: --nthreads 4
[2026-03-09 21:31:23] Threads: 4
[2026-03-09 21:31:23] Checking for CVMFS
[2026-03-09 21:31:23] No cvmfs_config command found, will try listing directly
[2026-03-09 21:31:23] CVMFS is ok
[2026-03-09 21:31:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-09 21:31:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-09 21:31:23] Further information can be found at the LHC@home message board.
[2026-03-09 21:31:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-09 21:31:23] Checking for apptainer binary...
[2026-03-09 21:31:23] which: no apptainer in ((null))
[2026-03-09 21:31:23] apptainer is not installed, using version from CVMFS
[2026-03-09 21:31:23] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-09 21:31:23] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot32/slots/9/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut26.grid.cesnet.cz
[2026-03-09 21:31:23] apptainer works
[2026-03-09 21:31:23] Set ATHENA_PROC_NUMBER=4
[2026-03-09 21:31:23] Set ATHENA_CORE_NUMBER=4
[2026-03-09 21:31:23] Starting ATLAS job with PandaID=7047245507
[2026-03-09 21:31:23] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot32/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-09 23:01:49]  *** The last 200 lines of the pilot log: ***
[2026-03-09 23:01:49] 2026-03-09 22:00:38,802 | INFO     | adding to output.list: log.48958635._002296.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/09/8f/log.48958635._002296.job.log.tg
[2026-03-09 23:01:49] 2026-03-09 22:00:38,803 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-09 23:01:49] 2026-03-09 22:00:38,803 | INFO     | summary of transferred files:
[2026-03-09 23:01:49] 2026-03-09 22:00:38,803 | INFO     |  -- lfn=log.48958635._002296.job.log.tgz.1, status_code=0, status=transferred
[2026-03-09 23:01:49] 2026-03-09 22:00:38,803 | INFO     | stage-out finished correctly
[2026-03-09 23:01:49] 2026-03-09 22:00:38,951 | INFO     | time since job start (5344s) is within the limit (349056.0s)
[2026-03-09 23:01:49] 2026-03-09 22:00:39,121 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-09 23:01:49] 2026-03-09 22:00:39,576 | WARNING  | process 1885659 can no longer be monitored (due to stat problems) - aborting
[2026-03-09 23:01:49] 2026-03-09 22:00:39,576 | INFO     | using path: /var/lib/boinc/var/slot32/slots/9/PanDA_Pilot-7047245507/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 23:01:49] 2026-03-09 22:00:39,577 | INFO     | using path: /var/lib/boinc/var/slot32/slots/9/PanDA_Pilot-7047245507/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 23:01:49] 2026-03-09 22:00:39,577 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-09 23:01:49] 2026-03-09 22:00:39,577 | WARNING  | maxPSS not found in memory monitor output
[2026-03-09 23:01:49] 2026-03-09 22:00:39,578 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2637408 B
[2026-03-09 23:01:49] 2026-03-09 22:00:39,578 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15849 B
[2026-03-09 23:01:49] 2026-03-09 22:00:39,578 | INFO     | executing command: df -mP /var/lib/boinc/var/slot32/slots/9
[2026-03-09 23:01:49] 2026-03-09 22:00:39,591 | INFO     | sufficient remaining disk space (20041433088 B)
[2026-03-09 23:01:49] 2026-03-09 22:00:39,591 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-03-09 23:01:49] 2026-03-09 22:00:39,592 | INFO     | size of work directory /var/lib/boinc/var/slot32/slots/9/PanDA_Pilot-7047245507: 2940839 B (within 5033164800 B limit)
[2026-03-09 23:01:49] 2026-03-09 22:00:39,592 | INFO     | pfn file=/var/lib/boinc/var/slot32/slots/9/PanDA_Pilot-7047245507/HITS.48958635._002296.pool.root.1 does not exist (skip from workdir size calculation)
[2026-03-09 23:01:49] 2026-03-09 22:00:39,592 | INFO     | total size of present files: 0 B (workdir size: 2940839 B)
[2026-03-09 23:01:49] 2026-03-09 22:00:39,592 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot32/slots/9/PanDA_Pilot-7047245507/HITS.48958635._002296.pool.root.1 since it does not exist
[2026-03-09 23:01:49] 2026-03-09 22:00:40,003 | INFO     | number of running child processes to parent process 1885659: 1
[2026-03-09 23:01:49] 2026-03-09 22:00:40,003 | INFO     | maximum number of monitored processes: 6
[2026-03-09 23:01:49] 2026-03-09 22:00:40,956 | INFO     | time since job start (5346s) is within the limit (349056.0s)
[2026-03-09 23:01:49] 2026-03-09 22:00:41,819 | INFO     | job 7047245507 has state=finished
[2026-03-09 23:01:49] 2026-03-09 22:00:41,819 | INFO     | preparing for final server update for job 7047245507 in state='finished'
[2026-03-09 23:01:49] 2026-03-09 22:00:42,504 | INFO     | monitor loop #389: job 0:7047245507 is in state 'finished'
[2026-03-09 23:01:49] 2026-03-09 22:00:42,504 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-09 23:01:49] 2026-03-09 22:00:42,511 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-03-09 23:01:49] 2026-03-09 22:00:42,511 | INFO     | reading metadata from: /var/lib/boinc/var/slot32/slots/9/PanDA_Pilot-7047245507/jobReport.json
[2026-03-09 23:01:49] 2026-03-09 22:00:42,512 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot32/slots/9/workernode_map.json
[2026-03-09 23:01:49] 2026-03-09 22:00:42,513 | INFO     | this job has now completed (state=finished)
[2026-03-09 23:01:49] 2026-03-09 22:00:42,513 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-09 23:01:49] 2026-03-09 22:00:42,513 | INFO     | log transfer has been attempted: DONE
[2026-03-09 23:01:49] 2026-03-09 22:00:42,513 | INFO     | job 7047245507 has finished - writing final server update
[2026-03-09 23:01:49] 2026-03-09 22:00:42,513 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_4134407/.job.ad'
[2026-03-09 23:01:49] 2026-03-09 22:00:42,513 | INFO     | total number of processed events: 400 (read)
[2026-03-09 23:01:49] 2026-03-09 22:00:42,531 | INFO     | using path: /var/lib/boinc/var/slot32/slots/9/PanDA_Pilot-7047245507/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 23:01:49] 2026-03-09 22:00:42,531 | INFO     | extracted standard info from prmon json
[2026-03-09 23:01:49] 2026-03-09 22:00:42,531 | INFO     | extracted standard memory fields from prmon json
[2026-03-09 23:01:49] 2026-03-09 22:00:42,531 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-09 23:01:49] 2026-03-09 22:00:42,531 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-09 23:01:49] 2026-03-09 22:00:42,531 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-09 23:01:49] 2026-03-09 22:00:42,533 | INFO     | fitting pss+swap vs Time
[2026-03-09 23:01:49] 2026-03-09 22:00:42,533 | INFO     | sum of square deviations: 164765880.0
[2026-03-09 23:01:49] 2026-03-09 22:00:42,533 | INFO     | sum of deviations: -636145881.0000001
[2026-03-09 23:01:49] 2026-03-09 22:00:42,533 | INFO     | mean x: 1773091059.0
[2026-03-09 23:01:49] 2026-03-09 22:00:42,533 | INFO     | mean y: 2350795.8024691357
[2026-03-09 23:01:49] 2026-03-09 22:00:42,533 | INFO     | intersect: 6848092000.357552
[2026-03-09 23:01:49] 2026-03-09 22:00:42,533 | INFO     | chi2: 0.0004787379119764646
[2026-03-09 23:01:49] 2026-03-09 22:00:42,533 | INFO     | current memory leak: -3.86 B/s (using 81 data points, chi2=0.00)
[2026-03-09 23:01:49] 2026-03-09 22:00:42,533 | INFO     | could have reported an average CPU frequency of 3594 MHz (6 samples)
[2026-03-09 23:01:49] 2026-03-09 22:00:42,534 | INFO     | ..............................
[2026-03-09 23:01:49] 2026-03-09 22:00:42,534 | INFO     | . Timing measurements:
[2026-03-09 23:01:49] 2026-03-09 22:00:42,534 | INFO     | . get job = 0 s
[2026-03-09 23:01:49] 2026-03-09 22:00:42,534 | INFO     | . initial setup = 4 s
[2026-03-09 23:01:49] 2026-03-09 22:00:42,534 | INFO     | . payload setup = 4 s
[2026-03-09 23:01:49] 2026-03-09 22:00:42,534 | INFO     | . stage-in = 0 s
[2026-03-09 23:01:49] 2026-03-09 22:00:42,534 | INFO     | . payload execution = 5323 s
[2026-03-09 23:01:49] 2026-03-09 22:00:42,534 | INFO     | . stage-out = 0 s
[2026-03-09 23:01:49] 2026-03-09 22:00:42,534 | INFO     | . log creation = 0 s
[2026-03-09 23:01:49] 2026-03-09 22:00:42,534 | INFO     | ..............................
[2026-03-09 23:01:49] 2026-03-09 22:00:42,586 | INFO     | 
[2026-03-09 23:01:49] 2026-03-09 22:00:42,586 | INFO     | job summary report
[2026-03-09 23:01:49] 2026-03-09 22:00:42,586 | INFO     | --------------------------------------------------
[2026-03-09 23:01:49] 2026-03-09 22:00:42,586 | INFO     | PanDA job id: 7047245507
[2026-03-09 23:01:49] 2026-03-09 22:00:42,586 | INFO     | task id: 48958635
[2026-03-09 23:01:49] 2026-03-09 22:00:42,586 | INFO     | errors: (none)
[2026-03-09 23:01:49] 2026-03-09 22:00:42,586 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-09 23:01:49] 2026-03-09 22:00:42,586 | INFO     | pilot state: finished 
[2026-03-09 23:01:49] 2026-03-09 22:00:42,586 | INFO     | transexitcode: 0
[2026-03-09 23:01:49] 2026-03-09 22:00:42,586 | INFO     | exeerrorcode: 0
[2026-03-09 23:01:49] 2026-03-09 22:00:42,586 | INFO     | exeerrordiag: 
[2026-03-09 23:01:49] 2026-03-09 22:00:42,586 | INFO     | exitcode: 0
[2026-03-09 23:01:49] 2026-03-09 22:00:42,586 | INFO     | exitmsg: OK
[2026-03-09 23:01:49] 2026-03-09 22:00:42,586 | INFO     | cpuconsumptiontime: 20512 s
[2026-03-09 23:01:49] 2026-03-09 22:00:42,586 | INFO     | nevents: 400
[2026-03-09 23:01:49] 2026-03-09 22:00:42,586 | INFO     | neventsw: 0
[2026-03-09 23:01:49] 2026-03-09 22:00:42,586 | INFO     | pid: 1885659
[2026-03-09 23:01:49] 2026-03-09 22:00:42,586 | INFO     | pgrp: 1885659
[2026-03-09 23:01:49] 2026-03-09 22:00:42,586 | INFO     | corecount: 4
[2026-03-09 23:01:49] 2026-03-09 22:00:42,587 | INFO     | event service: False
[2026-03-09 23:01:49] 2026-03-09 22:00:42,587 | INFO     | sizes: {0: 2279821, 1: 2280225, 11: 2280225, 5332: 2306659, 5334: 2315735, 5337: 2315901}
[2026-03-09 23:01:49] 2026-03-09 22:00:42,587 | INFO     | --------------------------------------------------
[2026-03-09 23:01:49] 2026-03-09 22:00:42,587 | INFO     | 
[2026-03-09 23:01:49] 2026-03-09 22:00:42,587 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot32/slots/9
[2026-03-09 23:01:49] 2026-03-09 22:00:42,609 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-09 23:01:49] 2026-03-09 22:00:42,609 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-09 23:01:49] 2026-03-09 22:00:42,609 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-09 23:01:49] 2026-03-09 22:00:42,609 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-09 23:01:49] 2026-03-09 22:00:42,609 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-09 23:01:49] 2026-03-09 22:00:42,609 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-09 23:01:49] 2026-03-09 22:00:42,609 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-09 23:01:49] 2026-03-09 22:00:42,609 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-09 23:01:49] 2026-03-09 22:00:42,609 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-09 23:01:49] 2026-03-09 22:00:42,609 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-09 23:01:49] 2026-03-09 22:00:42,609 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-09 23:01:49] 2026-03-09 22:00:42,609 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-09 23:01:49] 2026-03-09 22:00:42,609 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-09 23:01:49] 2026-03-09 22:00:42,609 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-09 23:01:49] 2026-03-09 22:00:42,609 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-09 23:01:49] 2026-03-09 22:00:42,609 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-09 23:01:49] 2026-03-09 22:00:42,609 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-09 23:01:49] 2026-03-09 22:00:42,609 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-09 23:01:49] 2026-03-09 22:00:42,609 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-09 23:01:49] 2026-03-09 22:00:42,609 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-09 23:01:49] 2026-03-09 22:00:42,609 | INFO     | job 7047245507 has completed (purged errors)
[2026-03-09 23:01:49] 2026-03-09 22:00:42,610 | INFO     | overall cleanup function is called
[2026-03-09 23:01:49] 2026-03-09 22:00:43,617 | INFO     | --- collectZombieJob: --- 10, [1885659]
[2026-03-09 23:01:49] 2026-03-09 22:00:43,617 | INFO     | zombie collector waiting for pid 1885659
[2026-03-09 23:01:49] 2026-03-09 22:00:43,617 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-09 23:01:49] 2026-03-09 22:00:43,617 | INFO     | collected zombie processes
[2026-03-09 23:01:49] 2026-03-09 22:00:43,617 | INFO     | will attempt to kill all subprocesses of pid=1885659
[2026-03-09 23:01:49] 2026-03-09 22:00:44,022 | INFO     | process IDs to be killed: [1885659] (in reverse order)
[2026-03-09 23:01:49] 2026-03-09 22:00:44,224 | WARNING  | found no corresponding commands to process id(s)
[2026-03-09 23:01:49] 2026-03-09 22:00:44,224 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-09 23:01:49] 2026-03-09 22:00:44,248 | INFO     | did not find any defunct processes belonging to 1885659
[2026-03-09 23:01:49] 2026-03-09 22:00:44,271 | INFO     | did not find any defunct processes belonging to 1885659
[2026-03-09 23:01:49] 2026-03-09 22:00:44,271 | INFO     | ready for new job
[2026-03-09 23:01:49] 2026-03-09 22:00:44,271 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-09 23:01:49] 2026-03-09 22:00:44,272 | INFO     | **************************************
[2026-03-09 23:01:49] 2026-03-09 22:00:44,273 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-09 23:01:49] 2026-03-09 22:00:44,273 | INFO     | **************************************
[2026-03-09 23:01:49] 2026-03-09 22:00:44,273 | INFO     | 
[2026-03-09 23:01:49] 2026-03-09 22:00:44,278 | INFO     | architecture information:
[2026-03-09 23:01:49] 2026-03-09 22:00:44,278 | INFO     | executing command: cat /etc/os-release
[2026-03-09 23:01:49] 2026-03-09 22:00:44,293 | INFO     | cat /etc/os-release:
[2026-03-09 23:01:49] NAME="CentOS Linux"
[2026-03-09 23:01:49] VERSION="7 (Core)"
[2026-03-09 23:01:49] ID="centos"
[2026-03-09 23:01:49] ID_LIKE="rhel fedora"
[2026-03-09 23:01:49] VERSION_ID="7"
[2026-03-09 23:01:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-09 23:01:49] ANSI_COLOR="0;31"
[2026-03-09 23:01:49] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-09 23:01:49] HOME_URL="https://www.centos.org/"
[2026-03-09 23:01:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-09 23:01:49] 
[2026-03-09 23:01:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-09 23:01:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-09 23:01:49] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-09 23:01:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-09 23:01:49] 
[2026-03-09 23:01:49] 2026-03-09 22:00:44,293 | INFO     | **************************************
[2026-03-09 23:01:49] 2026-03-09 22:00:44,796 | INFO     | executing command: df -mP /var/lib/boinc/var/slot32/slots/9
[2026-03-09 23:01:49] 2026-03-09 22:00:44,807 | INFO     | sufficient remaining disk space (20040384512 B)
[2026-03-09 23:01:49] 2026-03-09 22:00:44,807 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-09 23:01:49] 2026-03-09 22:00:44,807 | INFO     | current server update state: UPDATING_FINAL
[2026-03-09 23:01:49] 2026-03-09 22:00:44,808 | INFO     | update_server=False
[2026-03-09 23:01:49] 2026-03-09 22:00:44,808 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-09 23:01:49] 2026-03-09 22:00:44,808 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-09 23:01:49] 2026-03-09 22:00:44,939 | INFO     | all data control threads have been joined
[2026-03-09 23:01:49] 2026-03-09 22:00:45,007 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-09 23:01:49] 2026-03-09 22:00:45,008 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-09 23:01:49] 2026-03-09 22:00:45,008 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-09 23:01:49] 2026-03-09 22:00:45,008 | INFO     | will abort loop
[2026-03-09 23:01:49] 2026-03-09 22:00:45,030 | INFO     | all payload control threads have been joined
[2026-03-09 23:01:49] 2026-03-09 22:00:45,174 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-09 23:01:49] 2026-03-09 22:00:45,587 | INFO     | all job control threads have been joined
[2026-03-09 23:01:49] 2026-03-09 22:00:45,813 | INFO     | [job] retrieve thread has finished
[2026-03-09 23:01:49] 2026-03-09 22:00:45,843 | INFO     | [payload] execute_payloads thread has finished
[2026-03-09 23:01:49] 2026-03-09 22:00:45,945 | INFO     | [data] control thread has finished
[2026-03-09 23:01:49] 2026-03-09 22:00:45,980 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-09 23:01:49] 2026-03-09 22:00:46,013 | INFO     | [job] job monitor thread has finished
[2026-03-09 23:01:49] 2026-03-09 22:00:46,035 | INFO     | [payload] control thread has finished
[2026-03-09 23:01:49] 2026-03-09 22:00:46,389 | INFO     | [payload] validate_post thread has finished
[2026-03-09 23:01:49] 2026-03-09 22:00:46,520 | INFO     | [job] create_data_payload thread has finished
[2026-03-09 23:01:49] 2026-03-09 22:00:46,568 | INFO     | [job] validate thread has finished
[2026-03-09 23:01:49] 2026-03-09 22:00:46,595 | INFO     | [job] control thread has finished
[2026-03-09 23:01:49] 2026-03-09 22:00:46,712 | INFO     | [payload] validate_pre thread has finished
[2026-03-09 23:01:49] 2026-03-09 22:00:46,814 | INFO     | [data] copytool_out thread has finished
[2026-03-09 23:01:49] 2026-03-09 22:00:47,018 | INFO     | [data] copytool_in thread has finished
[2026-03-09 23:01:49] 2026-03-09 22:00:47,185 | INFO     | [payload] failed_post thread has finished
[2026-03-09 23:01:49] 2026-03-09 22:00:47,599 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-09 23:01:49] 2026-03-09 22:00:48,604 | INFO     | [job] queue monitor thread has finished
[2026-03-09 23:01:49] 2026-03-09 22:00:49,179 | INFO     | [data] queue_monitor thread has finished
[2026-03-09 23:01:49] 2026-03-09 22:01:14,506 | INFO     | PID=1879928 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-09 23:01:49] 2026-03-09 22:01:14,506 | INFO     | .. there are 56 such processes running
[2026-03-09 23:01:49] 2026-03-09 22:01:14,506 | INFO     | found 0 job(s) in 20 queues
[2026-03-09 23:01:49] 2026-03-09 22:01:14,506 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-09 23:01:49] 2026-03-09 22:01:14,506 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-09 23:01:49] 2026-03-09 22:01:29,439 [wrapper] supervise_pilot (15 min periods counter: 7)
[2026-03-09 23:01:49] 2026-03-09 22:01:42,784 | INFO     | [monitor] cgroup control has ended
[2026-03-09 23:01:49] 2026-03-09 22:01:44,104 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22871648614208)>', '<ExcThread(monitor, started 22871408912128)>']
[2026-03-09 23:01:49] 2026-03-09 22:01:44,649 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-09 23:01:49] 2026-03-09 22:01:44,650 | INFO     | [monitor] control thread has ended
[2026-03-09 23:01:49] 2026-03-09 22:01:49,130 | INFO     | all workflow threads have been joined
[2026-03-09 23:01:49] 2026-03-09 22:01:49,130 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-09 23:01:49] 2026-03-09 22:01:49,130 | INFO     | traces error code: 0
[2026-03-09 23:01:49] 2026-03-09 22:01:49,130 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-09 23:01:49] 2026-03-09 22:01:49,259 [wrapper] ==== pilot stdout END ====
[2026-03-09 23:01:49] 2026-03-09 22:01:49,262 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-09 23:01:49] 2026-03-09 22:01:49,264 [wrapper] pilotpid: 1879928
[2026-03-09 23:01:49] 2026-03-09 22:01:49,265 [wrapper] Pilot exit status: 0
[2026-03-09 23:01:49] 2026-03-09 22:01:49,274 [wrapper] pandaids: 7047245507
[2026-03-09 23:01:49] 2026-03-09 22:01:49,378 [wrapper] cleanup supervisor_pilot 2687122 1879929
[2026-03-09 23:01:49] 2026-03-09 22:01:49,380 [wrapper] Test setup, not cleaning
[2026-03-09 23:01:49] 2026-03-09 22:01:49,382 [wrapper] apfmon messages muted
[2026-03-09 23:01:49] 2026-03-09 22:01:49,384 [wrapper] ==== wrapper stdout END ====
[2026-03-09 23:01:49] 2026-03-09 22:01:49,387 [wrapper] ==== wrapper stderr END ====
[2026-03-09 23:01:49]  *** Error codes and diagnostics ***
[2026-03-09 23:01:49]     "exeErrorCode": 0,
[2026-03-09 23:01:49]     "exeErrorDiag": "",
[2026-03-09 23:01:49]     "pilotErrorCode": 0,
[2026-03-09 23:01:49]     "pilotErrorDiag": "",
[2026-03-09 23:01:49]  *** Listing of results directory ***
[2026-03-09 23:01:49] total 449248
[2026-03-09 23:01:49] -rw-r--r--. 1 boinc boinc    584627 Mar  9 13:35 pilot3.tar.gz
[2026-03-09 23:01:49] -rwx------. 1 boinc boinc     36322 Mar  9 13:39 runpilot2-wrapper.sh
[2026-03-09 23:01:49] -rw-r--r--. 1 boinc boinc      5111 Mar  9 13:39 queuedata.json
[2026-03-09 23:01:49] -rw-r--r--. 1 boinc boinc       100 Mar  9 21:31 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-09 23:01:49] -rwxr-xr-x. 1 boinc boinc      7986 Mar  9 21:31 run_atlas
[2026-03-09 23:01:49] -rw-r--r--. 1 boinc boinc       105 Mar  9 21:31 job.xml
[2026-03-09 23:01:49] -rw-r--r--. 2 boinc boinc 265212830 Mar  9 21:31 EVNT.48958633._000089.pool.root.1
[2026-03-09 23:01:49] -rw-r--r--. 2 boinc boinc     15845 Mar  9 21:31 start_atlas.sh
[2026-03-09 23:01:49] drwxrwx--x. 2 boinc boinc      4096 Mar  9 21:31 shared
[2026-03-09 23:01:49] -rw-r--r--. 2 boinc boinc    597933 Mar  9 21:31 input.tar.gz
[2026-03-09 23:01:49] -rw-r--r--. 1 boinc boinc      6705 Mar  9 21:31 init_data.xml
[2026-03-09 23:01:49] -rw-r--r--. 1 boinc boinc         0 Mar  9 21:31 boinc_lockfile
[2026-03-09 23:01:49] -rw-r--r--. 1 boinc boinc      2526 Mar  9 21:31 pandaJob.out
[2026-03-09 23:01:49] -rw-------. 1 boinc boinc   1002738 Mar  9 21:31 agis_schedconf.cvmfs.json
[2026-03-09 23:01:49] -rw-------. 1 boinc boinc   1511578 Mar  9 21:31 agis_ddmendpoints.agis.ALL.json
[2026-03-09 23:01:49] -rw-------. 1 boinc boinc       443 Mar  9 21:31 workernode_map.json
[2026-03-09 23:01:49] drwx------. 5 boinc boinc      4096 Mar  9 21:31 pilot3
[2026-03-09 23:01:49] -rw-------. 1 boinc boinc 188748158 Mar  9 23:00 HITS.48958635._002296.pool.root.1
[2026-03-09 23:01:49] -rw-r--r--. 1 boinc boinc       529 Mar  9 23:00 boinc_task_state.xml
[2026-03-09 23:01:49] -rw-------. 1 boinc boinc        95 Mar  9 23:00 pilot_heartbeat.json
[2026-03-09 23:01:49] -rw-------. 1 boinc boinc      1030 Mar  9 23:00 memory_monitor_summary.json
[2026-03-09 23:01:49] -rw-------. 1 boinc boinc    283230 Mar  9 23:00 log.48958635._002296.job.log.tgz.1
[2026-03-09 23:01:49] -rw-------. 1 boinc boinc      6344 Mar  9 23:00 heartbeat.json
[2026-03-09 23:01:49] -rw-r--r--. 1 boinc boinc        27 Mar  9 23:01 wrapper_checkpoint.txt
[2026-03-09 23:01:49] -rw-r--r--. 1 boinc boinc      8192 Mar  9 23:01 boinc_mmap_file
[2026-03-09 23:01:49] -rw-------. 1 boinc boinc      5015 Mar  9 23:01 pilotlog.txt
[2026-03-09 23:01:49] -rw-------. 1 boinc boinc    781465 Mar  9 23:01 log.48958635._002296.job.log.1
[2026-03-09 23:01:49] -rw-------. 1 boinc boinc       357 Mar  9 23:01 output.list
[2026-03-09 23:01:49] -rw-r--r--. 1 boinc boinc       620 Mar  9 23:01 runtime_log
[2026-03-09 23:01:49] -rw-------. 1 boinc boinc   1085440 Mar  9 23:01 result.tar.gz
[2026-03-09 23:01:49] -rw-r--r--. 1 boinc boinc      9204 Mar  9 23:01 runtime_log.err
[2026-03-09 23:01:49] -rw-------. 1 boinc boinc       662 Mar  9 23:01 JsCMDm83oJ9n9Rq4apOajLDm4fhM0noT9bVooX4SDmqnZLDmvoicKn.diag
[2026-03-09 23:01:49] -rw-r--r--. 1 boinc boinc     22473 Mar  9 23:01 stderr.txt
[2026-03-09 23:01:49] HITS file was successfully produced:
[2026-03-09 23:01:49] -rw-------. 1 boinc boinc 188748158 Mar  9 23:00 shared/HITS.pool.root.1
[2026-03-09 23:01:49]  *** Contents of shared directory: ***
[2026-03-09 23:01:49] total 444996
[2026-03-09 23:01:49] -rw-r--r--. 2 boinc boinc 265212830 Mar  9 21:31 ATLAS.root_0
[2026-03-09 23:01:49] -rw-r--r--. 2 boinc boinc     15845 Mar  9 21:31 start_atlas.sh
[2026-03-09 23:01:49] -rw-r--r--. 2 boinc boinc    597933 Mar  9 21:31 input.tar.gz
[2026-03-09 23:01:49] -rw-------. 1 boinc boinc 188748158 Mar  9 23:00 HITS.pool.root.1
[2026-03-09 23:01:49] -rw-------. 1 boinc boinc   1085440 Mar  9 23:01 result.tar.gz
23:01:51 (1875408): run_atlas exited; CPU time 20731.216335
23:01:51 (1875408): called boinc_finish(0)

</stderr_txt>
]]>

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