Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
21:46:38 (905798): wrapper (7.7.26015): starting
21:46:38 (905798): wrapper: running run_atlas (--nthreads 12)
[2026-03-09 21:46:38] Arguments: --nthreads 12
[2026-03-09 21:46:38] Threads: 12
[2026-03-09 21:46:38] Checking for CVMFS
[2026-03-09 21:46:38] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-09 21:46:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-09 21:46:38] Running cvmfs_config stat atlas.cern.ch
[2026-03-09 21:46:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-09 21:46:39] 2.13.0.0 189424 100 46008 157090 3 1 42288666 82903041 0 130560 0 40019 99.988 4090 1456 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2026-03-09 21:46:39] CVMFS is ok
[2026-03-09 21:46:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-09 21:46:39] Small home clusters do not require a local http proxy but it is suggested if
[2026-03-09 21:46:39] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-03-09 21:46:39] Further information can be found at the LHC@home message board.
[2026-03-09 21:46:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-09 21:46:39] Checking for apptainer binary...
[2026-03-09 21:46:39] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-09 21:46:39] Running /usr/bin/apptainer --version
[2026-03-09 21:46:39] apptainer version 1.4.5
[2026-03-09 21:46:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-09 21:46:39] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) torr
[2026-03-09 21:46:39] apptainer works
[2026-03-09 21:46:39] Set ATHENA_PROC_NUMBER=12
[2026-03-09 21:46:39] Set ATHENA_CORE_NUMBER=12
[2026-03-09 21:46:39] Starting ATLAS job with PandaID=7040548485
[2026-03-09 21:46:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-09 22:25:11]  *** The last 200 lines of the pilot log: ***
[2026-03-09 22:25:11]  scope=mc23_13p6TeV
[2026-03-09 22:25:11]  status=None
[2026-03-09 22:25:11]  status_code=0
[2026-03-09 22:25:11]  storage_token=
[2026-03-09 22:25:11]  surl=/var/lib/boinc-client/slots/3/PanDA_Pilot-7040548485/log.48955010._016679.job.log.tgz.1
[2026-03-09 22:25:11]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a5/be/log.48955010._016679.job.log.tgz.1
[2026-03-09 22:25:11]  workdir=None
[2026-03-09 22:25:11] ]
[2026-03-09 22:25:11] 2026-03-09 22:24:13,089 | INFO     | transferring file log.48955010._016679.job.log.tgz.1 from /var/lib/boinc-client/slots/3/PanDA_Pilot-7040548485/log.48955010._016679.job.log.tgz.1 to /var/lib/boinc
[2026-03-09 22:25:11] 2026-03-09 22:24:13,089 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/3/PanDA_Pilot-7040548485/log.48955010._016679.job.log.tgz.1 /var/lib/boinc-client/slots/3/log.489550
[2026-03-09 22:25:11] 2026-03-09 22:24:13,104 | INFO     | adding to output.list: log.48955010._016679.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a5/be/log.48955010._016679.job.log.tg
[2026-03-09 22:25:11] 2026-03-09 22:24:13,104 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-09 22:25:11] 2026-03-09 22:24:13,104 | INFO     | summary of transferred files:
[2026-03-09 22:25:11] 2026-03-09 22:24:13,104 | INFO     |  -- lfn=log.48955010._016679.job.log.tgz.1, status_code=0, status=transferred
[2026-03-09 22:25:11] 2026-03-09 22:24:13,104 | INFO     | stage-out finished correctly
[2026-03-09 22:25:11] 2026-03-09 22:24:13,646 | INFO     | time since job start (2231s) is within the limit (349056.0s)
[2026-03-09 22:25:11] 2026-03-09 22:24:14,299 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-09 22:25:11] 2026-03-09 22:24:15,654 | INFO     | time since job start (2233s) is within the limit (349056.0s)
[2026-03-09 22:25:11] 2026-03-09 22:24:16,877 | INFO     | job 7040548485 has state=finished
[2026-03-09 22:25:11] 2026-03-09 22:24:16,878 | INFO     | preparing for final server update for job 7040548485 in state='finished'
[2026-03-09 22:25:11] 2026-03-09 22:24:16,878 | INFO     | reading metadata from: /var/lib/boinc-client/slots/3/PanDA_Pilot-7040548485/jobReport.json
[2026-03-09 22:25:11] 2026-03-09 22:24:16,880 | INFO     | added worker_node to metadata from /var/lib/boinc-client/slots/3/workernode_map.json
[2026-03-09 22:25:11] 2026-03-09 22:24:16,880 | INFO     | this job has now completed (state=finished)
[2026-03-09 22:25:11] 2026-03-09 22:24:16,880 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-09 22:25:11] 2026-03-09 22:24:16,880 | INFO     | log transfer has been attempted: DONE
[2026-03-09 22:25:11] 2026-03-09 22:24:16,880 | INFO     | job 7040548485 has finished - writing final server update
[2026-03-09 22:25:11] 2026-03-09 22:24:16,881 | INFO     | total number of processed events: 400 (read)
[2026-03-09 22:25:11] 2026-03-09 22:24:16,882 | INFO     | using path: /var/lib/boinc-client/slots/3/PanDA_Pilot-7040548485/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 22:25:11] 2026-03-09 22:24:16,882 | INFO     | extracted standard info from prmon json
[2026-03-09 22:25:11] 2026-03-09 22:24:16,882 | INFO     | extracted standard memory fields from prmon json
[2026-03-09 22:25:11] 2026-03-09 22:24:16,882 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-09 22:25:11] 2026-03-09 22:24:16,883 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-09 22:25:11] 2026-03-09 22:24:16,883 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-09 22:25:11] 2026-03-09 22:24:16,883 | INFO     | fitting pss+swap vs Time
[2026-03-09 22:25:11] 2026-03-09 22:24:16,883 | INFO     | sum of square deviations: 8362947.5
[2026-03-09 22:25:11] 2026-03-09 22:24:16,884 | INFO     | sum of deviations: -2067313424.0
[2026-03-09 22:25:11] 2026-03-09 22:24:16,884 | INFO     | mean x: 1773094036.5
[2026-03-09 22:25:11] 2026-03-09 22:24:16,884 | INFO     | mean y: 3007129.466666667
[2026-03-09 22:25:11] 2026-03-09 22:24:16,884 | INFO     | intersect: 438310326847.8789
[2026-03-09 22:25:11] 2026-03-09 22:24:16,884 | INFO     | chi2: 0.05415886885432897
[2026-03-09 22:25:11] 2026-03-09 22:24:16,884 | INFO     | current memory leak: -247.20 B/s (using 30 data points, chi2=0.05)
[2026-03-09 22:25:11] 2026-03-09 22:24:16,884 | INFO     | could have reported an average CPU frequency of 3680 MHz (5 samples)
[2026-03-09 22:25:11] 2026-03-09 22:24:16,884 | INFO     | ..............................
[2026-03-09 22:25:11] 2026-03-09 22:24:16,884 | INFO     | . Timing measurements:
[2026-03-09 22:25:11] 2026-03-09 22:24:16,884 | INFO     | . get job = 0 s
[2026-03-09 22:25:11] 2026-03-09 22:24:16,884 | INFO     | . initial setup = 9 s
[2026-03-09 22:25:11] 2026-03-09 22:24:16,884 | INFO     | . payload setup = 8 s
[2026-03-09 22:25:11] 2026-03-09 22:24:16,884 | INFO     | . stage-in = 0 s
[2026-03-09 22:25:11] 2026-03-09 22:24:16,884 | INFO     | . payload execution = 2206 s
[2026-03-09 22:25:11] 2026-03-09 22:24:16,884 | INFO     | . stage-out = 0 s
[2026-03-09 22:25:11] 2026-03-09 22:24:16,884 | INFO     | . log creation = 0 s
[2026-03-09 22:25:11] 2026-03-09 22:24:16,884 | INFO     | ..............................
[2026-03-09 22:25:11] 2026-03-09 22:24:16,925 | INFO     | 
[2026-03-09 22:25:11] 2026-03-09 22:24:16,925 | INFO     | job summary report
[2026-03-09 22:25:11] 2026-03-09 22:24:16,926 | INFO     | --------------------------------------------------
[2026-03-09 22:25:11] 2026-03-09 22:24:16,926 | INFO     | PanDA job id: 7040548485
[2026-03-09 22:25:11] 2026-03-09 22:24:16,926 | INFO     | task id: 48955010
[2026-03-09 22:25:11] 2026-03-09 22:24:16,926 | INFO     | errors: (none)
[2026-03-09 22:25:11] 2026-03-09 22:24:16,926 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-09 22:25:11] 2026-03-09 22:24:16,926 | INFO     | pilot state: finished 
[2026-03-09 22:25:11] 2026-03-09 22:24:16,926 | INFO     | transexitcode: 0
[2026-03-09 22:25:11] 2026-03-09 22:24:16,926 | INFO     | exeerrorcode: 0
[2026-03-09 22:25:11] 2026-03-09 22:24:16,926 | INFO     | exeerrordiag: 
[2026-03-09 22:25:11] 2026-03-09 22:24:16,926 | INFO     | exitcode: 0
[2026-03-09 22:25:11] 2026-03-09 22:24:16,926 | INFO     | exitmsg: OK
[2026-03-09 22:25:11] 2026-03-09 22:24:16,926 | INFO     | cpuconsumptiontime: 19419 s
[2026-03-09 22:25:11] 2026-03-09 22:24:16,926 | INFO     | nevents: 400
[2026-03-09 22:25:11] 2026-03-09 22:24:16,926 | INFO     | neventsw: 0
[2026-03-09 22:25:11] 2026-03-09 22:24:16,926 | INFO     | pid: 919388
[2026-03-09 22:25:11] 2026-03-09 22:24:16,926 | INFO     | pgrp: 919388
[2026-03-09 22:25:11] 2026-03-09 22:24:16,926 | INFO     | corecount: 12
[2026-03-09 22:25:11] 2026-03-09 22:24:16,926 | INFO     | event service: False
[2026-03-09 22:25:11] 2026-03-09 22:24:16,926 | INFO     | sizes: {0: 2279753, 1: 2280214, 11: 2280214, 2219: 2305151, 2220: 2314163, 2221: 2314219, 2223: 2314573}
[2026-03-09 22:25:11] 2026-03-09 22:24:16,926 | INFO     | --------------------------------------------------
[2026-03-09 22:25:11] 2026-03-09 22:24:16,926 | INFO     | 
[2026-03-09 22:25:11] 2026-03-09 22:24:16,926 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/3
[2026-03-09 22:25:11] 2026-03-09 22:24:16,939 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-09 22:25:11] 2026-03-09 22:24:16,939 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-09 22:25:11] 2026-03-09 22:24:16,939 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-09 22:25:11] 2026-03-09 22:24:16,940 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-09 22:25:11] 2026-03-09 22:24:16,940 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-09 22:25:11] 2026-03-09 22:24:16,940 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-09 22:25:11] 2026-03-09 22:24:16,940 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-09 22:25:11] 2026-03-09 22:24:16,940 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-09 22:25:11] 2026-03-09 22:24:16,940 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-09 22:25:11] 2026-03-09 22:24:16,940 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-09 22:25:11] 2026-03-09 22:24:16,940 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-09 22:25:11] 2026-03-09 22:24:16,940 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-09 22:25:11] 2026-03-09 22:24:16,940 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-09 22:25:11] 2026-03-09 22:24:16,940 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-09 22:25:11] 2026-03-09 22:24:16,940 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-09 22:25:11] 2026-03-09 22:24:16,940 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-09 22:25:11] 2026-03-09 22:24:16,940 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-09 22:25:11] 2026-03-09 22:24:16,940 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-09 22:25:11] 2026-03-09 22:24:16,940 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-09 22:25:11] 2026-03-09 22:24:16,940 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-09 22:25:11] 2026-03-09 22:24:16,940 | INFO     | job 7040548485 has completed (purged errors)
[2026-03-09 22:25:11] 2026-03-09 22:24:16,940 | INFO     | overall cleanup function is called
[2026-03-09 22:25:11] 2026-03-09 22:24:17,948 | INFO     | --- collectZombieJob: --- 10, [919388]
[2026-03-09 22:25:11] 2026-03-09 22:24:17,948 | INFO     | zombie collector waiting for pid 919388
[2026-03-09 22:25:11] 2026-03-09 22:24:17,948 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-09 22:25:11] 2026-03-09 22:24:17,949 | INFO     | collected zombie processes
[2026-03-09 22:25:11] 2026-03-09 22:24:17,949 | INFO     | will attempt to kill all subprocesses of pid=919388
[2026-03-09 22:25:11] 2026-03-09 22:24:17,993 | INFO     | process IDs to be killed: [919388] (in reverse order)
[2026-03-09 22:25:11] 2026-03-09 22:24:18,021 | WARNING  | found no corresponding commands to process id(s)
[2026-03-09 22:25:11] 2026-03-09 22:24:18,021 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-09 22:25:11] 2026-03-09 22:24:18,024 | INFO     | did not find any defunct processes belonging to 919388
[2026-03-09 22:25:11] 2026-03-09 22:24:18,027 | INFO     | did not find any defunct processes belonging to 919388
[2026-03-09 22:25:11] 2026-03-09 22:24:18,027 | INFO     | ready for new job
[2026-03-09 22:25:11] 2026-03-09 22:24:18,027 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-09 22:25:11] 2026-03-09 22:24:18,028 | INFO     | **************************************
[2026-03-09 22:25:11] 2026-03-09 22:24:18,028 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-09 22:25:11] 2026-03-09 22:24:18,029 | INFO     | **************************************
[2026-03-09 22:25:11] 2026-03-09 22:24:18,029 | INFO     | 
[2026-03-09 22:25:11] 2026-03-09 22:24:18,029 | INFO     | architecture information:
[2026-03-09 22:25:11] 2026-03-09 22:24:18,029 | INFO     | executing command: cat /etc/os-release
[2026-03-09 22:25:11] 2026-03-09 22:24:18,041 | INFO     | cat /etc/os-release:
[2026-03-09 22:25:11] NAME="CentOS Linux"
[2026-03-09 22:25:11] VERSION="7 (Core)"
[2026-03-09 22:25:11] ID="centos"
[2026-03-09 22:25:11] ID_LIKE="rhel fedora"
[2026-03-09 22:25:11] VERSION_ID="7"
[2026-03-09 22:25:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-09 22:25:11] ANSI_COLOR="0;31"
[2026-03-09 22:25:11] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-09 22:25:11] HOME_URL="https://www.centos.org/"
[2026-03-09 22:25:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-09 22:25:11] 
[2026-03-09 22:25:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-09 22:25:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-09 22:25:11] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-09 22:25:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-09 22:25:11] 
[2026-03-09 22:25:11] 2026-03-09 22:24:18,042 | INFO     | **************************************
[2026-03-09 22:25:11] 2026-03-09 22:24:18,544 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/3
[2026-03-09 22:25:11] 2026-03-09 22:24:18,557 | INFO     | sufficient remaining disk space (606446026752 B)
[2026-03-09 22:25:11] 2026-03-09 22:24:18,557 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-09 22:25:11] 2026-03-09 22:24:18,558 | INFO     | current server update state: UPDATING_FINAL
[2026-03-09 22:25:11] 2026-03-09 22:24:18,558 | INFO     | update_server=False
[2026-03-09 22:25:11] 2026-03-09 22:24:18,558 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-09 22:25:11] 2026-03-09 22:24:18,558 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-09 22:25:11] 2026-03-09 22:24:18,649 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-09 22:25:11] 2026-03-09 22:24:19,032 | INFO     | all job control threads have been joined
[2026-03-09 22:25:11] 2026-03-09 22:24:19,096 | WARNING  | process 919388 can no longer be monitored (due to stat problems) - aborting
[2026-03-09 22:25:11] 2026-03-09 22:24:19,123 | INFO     | using path: /var/lib/boinc-client/slots/3/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 22:25:11] 2026-03-09 22:24:19,123 | INFO     | using path: /var/lib/boinc-client/slots/3/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 22:25:11] 2026-03-09 22:24:19,123 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-09 22:25:11] 2026-03-09 22:24:19,123 | WARNING  | maxPSS not found in memory monitor output
[2026-03-09 22:25:11] 2026-03-09 22:24:19,124 | INFO     | skipping file size check of payload stdout file (/var/lib/boinc-client/slots/3/PanDA_Pilot-7040548485/payload.stdout) since it has not been created yet
[2026-03-09 22:25:11] 2026-03-09 22:24:19,124 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/3
[2026-03-09 22:25:11] 2026-03-09 22:24:19,135 | INFO     | sufficient remaining disk space (606446026752 B)
[2026-03-09 22:25:11] 2026-03-09 22:24:19,135 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-03-09 22:25:11] 2026-03-09 22:24:19,135 | INFO     | output file size check: skipping output file /var/lib/boinc-client/slots/3/PanDA_Pilot-7040548485/HITS.48955010._016679.pool.root.1 since it does not exist
[2026-03-09 22:25:11] 2026-03-09 22:24:19,175 | INFO     | number of running child processes to parent process 919388: 1
[2026-03-09 22:25:11] 2026-03-09 22:24:19,176 | INFO     | maximum number of monitored processes: 6
[2026-03-09 22:25:11] 2026-03-09 22:24:19,176 | INFO     | aborting job monitoring since job object (job id=7040548485) has expired
[2026-03-09 22:25:11] 2026-03-09 22:24:19,176 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-09 22:25:11] 2026-03-09 22:24:19,176 | INFO     | will abort loop
[2026-03-09 22:25:11] 2026-03-09 22:24:19,233 | INFO     | all data control threads have been joined
[2026-03-09 22:25:11] 2026-03-09 22:24:19,405 | INFO     | all payload control threads have been joined
[2026-03-09 22:25:11] 2026-03-09 22:24:19,562 | INFO     | [job] retrieve thread has finished
[2026-03-09 22:25:11] 2026-03-09 22:24:19,563 | INFO     | [job] queue monitor thread has finished
[2026-03-09 22:25:11] 2026-03-09 22:24:20,016 | INFO     | [payload] validate_post thread has finished
[2026-03-09 22:25:11] 2026-03-09 22:24:20,037 | INFO     | [job] control thread has finished
[2026-03-09 22:25:11] 2026-03-09 22:24:20,095 | INFO     | [job] create_data_payload thread has finished
[2026-03-09 22:25:11] 2026-03-09 22:24:20,180 | INFO     | [job] job monitor thread has finished
[2026-03-09 22:25:11] 2026-03-09 22:24:20,180 | INFO     | [job] validate thread has finished
[2026-03-09 22:25:11] 2026-03-09 22:24:20,238 | INFO     | [data] control thread has finished
[2026-03-09 22:25:11] 2026-03-09 22:24:20,251 | INFO     | [payload] validate_pre thread has finished
[2026-03-09 22:25:11] 2026-03-09 22:24:20,333 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-09 22:25:11] 2026-03-09 22:24:20,410 | INFO     | [payload] control thread has finished
[2026-03-09 22:25:11] 2026-03-09 22:24:20,579 | INFO     | [data] copytool_in thread has finished
[2026-03-09 22:25:11] 2026-03-09 22:24:20,654 | INFO     | [data] copytool_out thread has finished
[2026-03-09 22:25:11] 2026-03-09 22:24:20,888 | INFO     | [payload] execute_payloads thread has finished
[2026-03-09 22:25:11] 2026-03-09 22:24:21,000 | INFO     | [payload] failed_post thread has finished
[2026-03-09 22:25:11] 2026-03-09 22:24:24,339 | INFO     | [data] queue_monitor thread has finished
[2026-03-09 22:25:11] 2026-03-09 22:24:29,157 | INFO     | job.realtimelogging is not enabled
[2026-03-09 22:25:11] 2026-03-09 22:24:30,162 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-09 22:25:11] 2026-03-09 22:24:48,795 | INFO     | PID=911144 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-09 22:25:11] 2026-03-09 22:24:48,796 | INFO     | found 0 job(s) in 20 queues
[2026-03-09 22:25:11] 2026-03-09 22:24:48,796 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-09 22:25:11] 2026-03-09 22:24:48,796 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-09 22:25:11] 2026-03-09 22:25:05,832 | INFO     | [monitor] cgroup control has ended
[2026-03-09 22:25:11] 2026-03-09 22:25:06,677 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 137041305102144)>', '<ExcThread(monitor, started 137040595252992)>']
[2026-03-09 22:25:11] 2026-03-09 22:25:06,887 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-09 22:25:11] 2026-03-09 22:25:06,887 | INFO     | [monitor] control thread has ended
[2026-03-09 22:25:11] 2026-03-09 22:25:11,703 | INFO     | all workflow threads have been joined
[2026-03-09 22:25:11] 2026-03-09 22:25:11,703 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-09 22:25:11] 2026-03-09 22:25:11,703 | INFO     | traces error code: 0
[2026-03-09 22:25:11] 2026-03-09 22:25:11,703 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-09 22:25:11] 2026-03-09 22:25:11,839 [wrapper] ==== pilot stdout END ====
[2026-03-09 22:25:11] 2026-03-09 22:25:11,841 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-09 22:25:11] 2026-03-09 22:25:11,844 [wrapper] pilotpid: 911144
[2026-03-09 22:25:11] 2026-03-09 22:25:11,847 [wrapper] Pilot exit status: 0
[2026-03-09 22:25:11] 2026-03-09 22:25:11,851 [wrapper] pandaids: 7040548485
[2026-03-09 22:25:11] 2026-03-09 22:25:11,866 [wrapper] cleanup supervisor_pilot 1134182 911145
[2026-03-09 22:25:11] 2026-03-09 22:25:11,873 [wrapper] Test setup, not cleaning
[2026-03-09 22:25:11] 2026-03-09 22:25:11,875 [wrapper] apfmon messages muted
[2026-03-09 22:25:11] 2026-03-09 22:25:11,876 [wrapper] ==== wrapper stdout END ====
[2026-03-09 22:25:11] 2026-03-09 22:25:11,877 [wrapper] ==== wrapper stderr END ====
[2026-03-09 22:25:11]  *** Error codes and diagnostics ***
[2026-03-09 22:25:11]     "exeErrorCode": 0,
[2026-03-09 22:25:11]     "exeErrorDiag": "",
[2026-03-09 22:25:11]     "pilotErrorCode": 0,
[2026-03-09 22:25:11]     "pilotErrorDiag": "",
[2026-03-09 22:25:11]  *** Listing of results directory ***
[2026-03-09 22:25:11] total 613072
[2026-03-09 22:25:11] -rw-r--r-- 1 boinc boinc    584627 Mar  9 07:07 pilot3.tar.gz
[2026-03-09 22:25:11] -rw-r--r-- 1 boinc boinc      5111 Mar  9 07:07 queuedata.json
[2026-03-09 22:25:11] -rwx------ 1 boinc boinc     36322 Mar  9 07:07 runpilot2-wrapper.sh
[2026-03-09 22:25:11] -rw-r--r-- 1 boinc boinc       100 Mar  9 21:46 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-09 22:25:11] -rwxr-xr-x 1 boinc boinc      7986 Mar  9 21:46 run_atlas
[2026-03-09 22:25:11] -rw-r--r-- 1 boinc boinc       105 Mar  9 21:46 job.xml
[2026-03-09 22:25:11] -rw-r--r-- 1 boinc boinc      9905 Mar  9 21:46 init_data.xml
[2026-03-09 22:25:11] -rw-r--r-- 2 boinc boinc 442325170 Mar  9 21:46 EVNT.46701403._001333.pool.root.1
[2026-03-09 22:25:11] -rw-r--r-- 2 boinc boinc     15845 Mar  9 21:46 start_atlas.sh
[2026-03-09 22:25:11] drwxrwx--x 2 boinc boinc      4096 Mar  9 21:46 shared
[2026-03-09 22:25:11] -rw-r--r-- 2 boinc boinc    597962 Mar  9 21:46 input.tar.gz
[2026-03-09 22:25:11] -rw-r--r-- 1 boinc boinc         0 Mar  9 21:46 boinc_lockfile
[2026-03-09 22:25:11] -rw-r--r-- 1 boinc boinc      2563 Mar  9 21:46 pandaJob.out
[2026-03-09 22:25:11] -rw------- 1 boinc boinc   1002738 Mar  9 21:46 agis_schedconf.cvmfs.json
[2026-03-09 22:25:11] -rw------- 1 boinc boinc   1511578 Mar  9 21:46 agis_ddmendpoints.agis.ALL.json
[2026-03-09 22:25:11] -rw------- 1 boinc boinc       421 Mar  9 21:47 workernode_map.json
[2026-03-09 22:25:11] drwx------ 5 boinc boinc      4096 Mar  9 21:47 pilot3
[2026-03-09 22:25:11] -rw------- 1 boinc boinc 180017852 Mar  9 22:23 HITS.48955010._016679.pool.root.1
[2026-03-09 22:25:11] -rw-r--r-- 1 boinc boinc       530 Mar  9 22:24 boinc_task_state.xml
[2026-03-09 22:25:11] -rw------- 1 boinc boinc      1031 Mar  9 22:24 memory_monitor_summary.json
[2026-03-09 22:25:11] -rw------- 1 boinc boinc    393564 Mar  9 22:24 log.48955010._016679.job.log.tgz.1
[2026-03-09 22:25:11] -rw------- 1 boinc boinc        95 Mar  9 22:24 pilot_heartbeat.json
[2026-03-09 22:25:11] -rw------- 1 boinc boinc      6310 Mar  9 22:24 heartbeat.json
[2026-03-09 22:25:11] -rw-r--r-- 1 boinc boinc      8192 Mar  9 22:25 boinc_mmap_file
[2026-03-09 22:25:11] -rw-r--r-- 1 boinc boinc        27 Mar  9 22:25 wrapper_checkpoint.txt
[2026-03-09 22:25:11] -rw------- 1 boinc boinc      6342 Mar  9 22:25 pilotlog.txt
[2026-03-09 22:25:11] -rw------- 1 boinc boinc    356832 Mar  9 22:25 log.48955010._016679.job.log.1
[2026-03-09 22:25:11] -rw------- 1 boinc boinc       357 Mar  9 22:25 output.list
[2026-03-09 22:25:11] -rw-r--r-- 1 boinc boinc       620 Mar  9 22:25 runtime_log
[2026-03-09 22:25:11] -rw------- 1 boinc boinc    768000 Mar  9 22:25 result.tar.gz
[2026-03-09 22:25:11] -rw-r--r-- 1 boinc boinc      9046 Mar  9 22:25 runtime_log.err
[2026-03-09 22:25:11] -rw------- 1 boinc boinc       649 Mar  9 22:25 fvGMDm5sjJ9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmBhbLDmKlxIhn.diag
[2026-03-09 22:25:11] -rw-r--r-- 1 boinc boinc     22381 Mar  9 22:25 stderr.txt
[2026-03-09 22:25:11] HITS file was successfully produced:
[2026-03-09 22:25:11] -rw------- 1 boinc boinc 180017852 Mar  9 22:23 shared/HITS.pool.root.1
[2026-03-09 22:25:11]  *** Contents of shared directory: ***
[2026-03-09 22:25:11] total 609120
[2026-03-09 22:25:11] -rw-r--r-- 2 boinc boinc 442325170 Mar  9 21:46 ATLAS.root_0
[2026-03-09 22:25:11] -rw-r--r-- 2 boinc boinc     15845 Mar  9 21:46 start_atlas.sh
[2026-03-09 22:25:11] -rw-r--r-- 2 boinc boinc    597962 Mar  9 21:46 input.tar.gz
[2026-03-09 22:25:11] -rw------- 1 boinc boinc 180017852 Mar  9 22:23 HITS.pool.root.1
[2026-03-09 22:25:11] -rw------- 1 boinc boinc    768000 Mar  9 22:25 result.tar.gz
22:25:13 (905798): run_atlas exited; CPU time 19341.085622
22:25:13 (905798): called boinc_finish(0)

</stderr_txt>
]]>

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