Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:05:29 (1711784): wrapper (7.7.26015): starting
00:05:29 (1711784): wrapper: running run_atlas (--nthreads 2)
[2026-03-10 00:05:29] Arguments: --nthreads 2
[2026-03-10 00:05:29] Threads: 2
[2026-03-10 00:05:29] Checking for CVMFS
[2026-03-10 00:05:29] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-10 00:06:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-10 00:06:07] Running cvmfs_config stat atlas.cern.ch
[2026-03-10 00:06:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-10 00:06:07] 2.9.2.0 35068 17633 62460 157092 0 49 29782189 36864000 0 130560 0 4875203 99.976 654281 12125 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-10 00:06:07] CVMFS is ok
[2026-03-10 00:06:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-10 00:06:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-10 00:06:07] Further information can be found at the LHC@home message board.
[2026-03-10 00:06:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-10 00:06:07] Checking for apptainer binary...
[2026-03-10 00:06:07] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-10 00:06:07] Running /usr/bin/apptainer --version
[2026-03-10 00:06:07] apptainer version 1.4.1-1.1
[2026-03-10 00:06:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-10 00:06:07] legendA269
[2026-03-10 00:06:07] apptainer works
[2026-03-10 00:06:07] Set ATHENA_PROC_NUMBER=2
[2026-03-10 00:06:07] Set ATHENA_CORE_NUMBER=2
[2026-03-10 00:06:08] Starting ATLAS job with PandaID=7039878944
[2026-03-10 00:06:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-10 01:47:52]  *** The last 200 lines of the pilot log: ***
[2026-03-10 01:47:52] 2026-03-10 00:47:21,111 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-10 01:47:52] 2026-03-10 00:47:21,111 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-10 01:47:52] 2026-03-10 00:47:21,111 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-10 01:47:52] 2026-03-10 00:47:21,111 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-10 01:47:52] 2026-03-10 00:47:21,111 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-10 01:47:52] 2026-03-10 00:47:21,111 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-10 01:47:52] 2026-03-10 00:47:21,111 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-10 01:47:52] 2026-03-10 00:47:21,111 | INFO     | job 7039878944 has completed (purged errors)
[2026-03-10 01:47:52] 2026-03-10 00:47:21,111 | INFO     | overall cleanup function is called
[2026-03-10 01:47:52] 2026-03-10 00:47:22,117 | INFO     | --- collectZombieJob: --- 10, [1720221]
[2026-03-10 01:47:52] 2026-03-10 00:47:22,117 | INFO     | zombie collector waiting for pid 1720221
[2026-03-10 01:47:52] 2026-03-10 00:47:22,117 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-10 01:47:52] 2026-03-10 00:47:22,118 | INFO     | collected zombie processes
[2026-03-10 01:47:52] 2026-03-10 00:47:22,118 | INFO     | will attempt to kill all subprocesses of pid=1720221
[2026-03-10 01:47:52] 2026-03-10 00:47:22,149 | INFO     | process IDs to be killed: [1720221] (in reverse order)
[2026-03-10 01:47:52] 2026-03-10 00:47:22,171 | WARNING  | found no corresponding commands to process id(s)
[2026-03-10 01:47:52] 2026-03-10 00:47:22,171 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-10 01:47:52] 2026-03-10 00:47:22,172 | INFO     | did not find any defunct processes belonging to 1720221
[2026-03-10 01:47:52] 2026-03-10 00:47:22,173 | INFO     | did not find any defunct processes belonging to 1720221
[2026-03-10 01:47:52] 2026-03-10 00:47:22,173 | INFO     | ready for new job
[2026-03-10 01:47:52] 2026-03-10 00:47:22,173 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-10 01:47:52] 2026-03-10 00:47:22,173 | INFO     | **************************************
[2026-03-10 01:47:52] 2026-03-10 00:47:22,173 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-10 01:47:52] 2026-03-10 00:47:22,173 | INFO     | **************************************
[2026-03-10 01:47:52] 2026-03-10 00:47:22,173 | INFO     | 
[2026-03-10 01:47:52] 2026-03-10 00:47:22,174 | INFO     | architecture information:
[2026-03-10 01:47:52] 2026-03-10 00:47:22,174 | INFO     | executing command: cat /etc/os-release
[2026-03-10 01:47:52] 2026-03-10 00:47:22,183 | INFO     | cat /etc/os-release:
[2026-03-10 01:47:52] NAME="CentOS Linux"
[2026-03-10 01:47:52] VERSION="7 (Core)"
[2026-03-10 01:47:52] ID="centos"
[2026-03-10 01:47:52] ID_LIKE="rhel fedora"
[2026-03-10 01:47:52] VERSION_ID="7"
[2026-03-10 01:47:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-10 01:47:52] ANSI_COLOR="0;31"
[2026-03-10 01:47:52] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-10 01:47:52] HOME_URL="https://www.centos.org/"
[2026-03-10 01:47:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-10 01:47:52] 
[2026-03-10 01:47:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-10 01:47:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-10 01:47:52] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-10 01:47:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-10 01:47:52] 
[2026-03-10 01:47:52] 2026-03-10 00:47:22,183 | INFO     | **************************************
[2026-03-10 01:47:52] 2026-03-10 00:47:22,684 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-10 01:47:52] 2026-03-10 00:47:22,697 | INFO     | sufficient remaining disk space (330067607552 B)
[2026-03-10 01:47:52] 2026-03-10 00:47:22,697 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-10 01:47:52] 2026-03-10 00:47:22,697 | INFO     | current server update state: UPDATING_FINAL
[2026-03-10 01:47:52] 2026-03-10 00:47:22,697 | INFO     | update_server=False
[2026-03-10 01:47:52] 2026-03-10 00:47:22,697 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-10 01:47:52] 2026-03-10 00:47:22,697 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-10 01:47:52] 2026-03-10 00:47:22,697 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-10 01:47:52] 2026-03-10 00:47:22,982 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-10 01:47:52] 2026-03-10 00:47:22,983 | INFO     | aborting loop
[2026-03-10 01:47:52] 2026-03-10 00:47:23,037 | INFO     | all payload control threads have been joined
[2026-03-10 01:47:52] 2026-03-10 00:47:23,269 | INFO     | all data control threads have been joined
[2026-03-10 01:47:52] 2026-03-10 00:47:23,702 | INFO     | [job] retrieve thread has finished
[2026-03-10 01:47:52] 2026-03-10 00:47:23,703 | INFO     | [job] queue monitor thread has finished
[2026-03-10 01:47:52] 2026-03-10 00:47:23,971 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-10 01:47:52] 2026-03-10 00:47:23,988 | INFO     | [job] job monitor thread has finished
[2026-03-10 01:47:52] 2026-03-10 00:47:24,043 | INFO     | [payload] control thread has finished
[2026-03-10 01:47:52] 2026-03-10 00:47:24,135 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-10 01:47:52] 2026-03-10 00:47:24,162 | INFO     | [job] create_data_payload thread has finished
[2026-03-10 01:47:52] 2026-03-10 00:47:24,272 | INFO     | [data] control thread has finished
[2026-03-10 01:47:52] 2026-03-10 00:47:24,309 | INFO     | all job control threads have been joined
[2026-03-10 01:47:52] 2026-03-10 00:47:24,375 | INFO     | [payload] execute_payloads thread has finished
[2026-03-10 01:47:52] 2026-03-10 00:47:24,381 | INFO     | [payload] validate_pre thread has finished
[2026-03-10 01:47:52] 2026-03-10 00:47:24,487 | INFO     | [job] validate thread has finished
[2026-03-10 01:47:52] 2026-03-10 00:47:24,527 | INFO     | [data] copytool_in thread has finished
[2026-03-10 01:47:52] 2026-03-10 00:47:24,734 | INFO     | [payload] failed_post thread has finished
[2026-03-10 01:47:52] 2026-03-10 00:47:25,258 | INFO     | [payload] validate_post thread has finished
[2026-03-10 01:47:52] 2026-03-10 00:47:25,312 | INFO     | [job] control thread has finished
[2026-03-10 01:47:52] 2026-03-10 00:47:26,142 | INFO     | [data] copytool_out thread has finished
[2026-03-10 01:47:52] 2026-03-10 00:47:26,704 | INFO     | [data] queue_monitor thread has finished
[2026-03-10 01:47:52] 2026-03-10 00:47:38,580 | INFO     | [monitor] cgroup control has ended
[2026-03-10 01:47:52] 2026-03-10 00:47:39,770 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140557738157888)>', '<ExcThread(monitor, started 140557032617728)>']
[2026-03-10 01:47:52] 2026-03-10 00:47:44,778 | INFO     | all workflow threads have been joined
[2026-03-10 01:47:52] 2026-03-10 00:47:44,778 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-10 01:47:52] 2026-03-10 00:47:44,779 | INFO     | traces error code: 0
[2026-03-10 01:47:52] 2026-03-10 00:47:44,779 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-10 01:47:52] 2026-03-10 00:47:52,349 | INFO     | PID=1715814 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-10 01:47:52] 2026-03-10 00:47:52,350 | INFO     | found 0 job(s) in 20 queues
[2026-03-10 01:47:52] 2026-03-10 00:47:52,350 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-10 01:47:52] 2026-03-10 00:47:52,350 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-10 01:47:52] 2026-03-10 00:47:52,350 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-10 01:47:52] 2026-03-10 00:47:52,350 | INFO     | [monitor] control thread has ended
[2026-03-10 01:47:52] 2026-03-10 00:47:52,388 [wrapper] ==== pilot stdout END ====
[2026-03-10 01:47:52] 2026-03-10 00:47:52,391 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-10 01:47:52] 2026-03-10 00:47:52,394 [wrapper] pilotpid: 1715814
[2026-03-10 01:47:52] 2026-03-10 00:47:52,396 [wrapper] Pilot exit status: 0
[2026-03-10 01:47:52] 2026-03-10 00:47:52,402 [wrapper] pandaids: 7039878944
[2026-03-10 01:47:52] 2026-03-10 00:47:52,414 [wrapper] cleanup supervisor_pilot 1725328 1715815
[2026-03-10 01:47:52] 2026-03-10 00:47:52,417 [wrapper] Test setup, not cleaning
[2026-03-10 01:47:52] 2026-03-10 00:47:52,419 [wrapper] apfmon messages muted
[2026-03-10 01:47:52] 2026-03-10 00:47:52,421 [wrapper] ==== wrapper stdout END ====
[2026-03-10 01:47:52] 2026-03-10 00:47:52,423 [wrapper] ==== wrapper stderr END ====
[2026-03-10 01:47:52]  *** Error codes and diagnostics ***
[2026-03-10 01:47:52]     "exeErrorCode": 0,
[2026-03-10 01:47:52]     "exeErrorDiag": "",
[2026-03-10 01:47:52]     "pilotErrorCode": 0,
[2026-03-10 01:47:52]     "pilotErrorDiag": "",
[2026-03-10 01:47:52]  *** Listing of results directory ***
[2026-03-10 01:47:52] total 336160
[2026-03-10 01:47:52] -rw-r--r-- 1 boinc boinc      5111 Mar  4 13:56 queuedata.json
[2026-03-10 01:47:52] -rw-r--r-- 1 boinc boinc    584627 Mar  4 13:56 pilot3.tar.gz
[2026-03-10 01:47:52] -rwx------ 1 boinc boinc     36322 Mar  4 13:56 runpilot2-wrapper.sh
[2026-03-10 01:47:52] -rw-r--r-- 1 boinc boinc       100 Mar 10 00:05 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-10 01:47:52] -rwxr-xr-x 1 boinc boinc      7986 Mar 10 00:05 run_atlas
[2026-03-10 01:47:52] -rw-r--r-- 1 boinc boinc       105 Mar 10 00:05 job.xml
[2026-03-10 01:47:52] -rw-r--r-- 2 boinc boinc 187921082 Mar 10 00:05 EVNT.48700928._000092.pool.root.1
[2026-03-10 01:47:52] -rw-r--r-- 2 boinc boinc    597939 Mar 10 00:05 input.tar.gz
[2026-03-10 01:47:52] -rw-r--r-- 2 boinc boinc     15845 Mar 10 00:05 start_atlas.sh
[2026-03-10 01:47:52] drwxrwx--x 2 boinc boinc      4096 Mar 10 00:05 shared
[2026-03-10 01:47:52] -rw-r--r-- 1 boinc boinc         0 Mar 10 00:05 boinc_setup_complete
[2026-03-10 01:47:52] -rw-r--r-- 1 boinc boinc      6208 Mar 10 00:05 init_data.xml
[2026-03-10 01:47:52] -rw-r--r-- 1 boinc boinc         0 Mar 10 00:05 boinc_lockfile
[2026-03-10 01:47:52] -rw-r--r-- 1 boinc boinc      2518 Mar 10 00:06 pandaJob.out
[2026-03-10 01:47:52] -rw------- 1 boinc boinc   1002738 Mar 10 00:06 agis_schedconf.cvmfs.json
[2026-03-10 01:47:52] -rw------- 1 boinc boinc   1511578 Mar 10 00:06 agis_ddmendpoints.agis.ALL.json
[2026-03-10 01:47:52] -rw------- 1 boinc boinc       429 Mar 10 00:06 workernode_map.json
[2026-03-10 01:47:52] drwx------ 5 boinc boinc      4096 Mar 10 00:06 pilot3
[2026-03-10 01:47:52] -rw------- 1 boinc boinc 150131814 Mar 10 01:47 HITS.48700930._002371.pool.root.1
[2026-03-10 01:47:52] -rw-r--r-- 1 boinc boinc       529 Mar 10 01:47 boinc_task_state.xml
[2026-03-10 01:47:52] -rw------- 1 boinc boinc      1015 Mar 10 01:47 memory_monitor_summary.json
[2026-03-10 01:47:52] -rw------- 1 boinc boinc    255291 Mar 10 01:47 log.48700930._002371.job.log.tgz.1
[2026-03-10 01:47:52] -rw------- 1 boinc boinc      6304 Mar 10 01:47 heartbeat.json
[2026-03-10 01:47:52] -rw-r--r-- 1 boinc boinc      8192 Mar 10 01:47 boinc_mmap_file
[2026-03-10 01:47:52] -rw-r--r-- 1 boinc boinc        27 Mar 10 01:47 wrapper_checkpoint.txt
[2026-03-10 01:47:52] -rw------- 1 boinc boinc       747 Mar 10 01:47 pilotlog.txt
[2026-03-10 01:47:52] -rw------- 1 boinc boinc        95 Mar 10 01:47 pilot_heartbeat.json
[2026-03-10 01:47:52] -rw------- 1 boinc boinc    875887 Mar 10 01:47 log.48700930._002371.job.log.1
[2026-03-10 01:47:52] -rw------- 1 boinc boinc       357 Mar 10 01:47 output.list
[2026-03-10 01:47:52] -rw-r--r-- 1 boinc boinc       620 Mar 10 01:47 runtime_log
[2026-03-10 01:47:52] -rw------- 1 boinc boinc   1146880 Mar 10 01:47 result.tar.gz
[2026-03-10 01:47:52] -rw-r--r-- 1 boinc boinc      8916 Mar 10 01:47 runtime_log.err
[2026-03-10 01:47:52] -rw------- 1 boinc boinc       661 Mar 10 01:47 9BNODmuw0H9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmHMKLDmalTi7n.diag
[2026-03-10 01:47:52] -rw-r--r-- 1 boinc boinc     11521 Mar 10 01:47 stderr.txt
[2026-03-10 01:47:52] HITS file was successfully produced:
[2026-03-10 01:47:52] -rw------- 1 boinc boinc 150131814 Mar 10 01:47 shared/HITS.pool.root.1
[2026-03-10 01:47:52]  *** Contents of shared directory: ***
[2026-03-10 01:47:52] total 331860
[2026-03-10 01:47:52] -rw-r--r-- 2 boinc boinc 187921082 Mar 10 00:05 ATLAS.root_0
[2026-03-10 01:47:52] -rw-r--r-- 2 boinc boinc    597939 Mar 10 00:05 input.tar.gz
[2026-03-10 01:47:52] -rw-r--r-- 2 boinc boinc     15845 Mar 10 00:05 start_atlas.sh
[2026-03-10 01:47:52] -rw------- 1 boinc boinc 150131814 Mar 10 01:47 HITS.pool.root.1
[2026-03-10 01:47:52] -rw------- 1 boinc boinc   1146880 Mar 10 01:47 result.tar.gz
01:47:53 (1711784): run_atlas exited; CPU time 11692.804202
01:47:53 (1711784): called boinc_finish(0)

</stderr_txt>
]]>

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