Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:52:52 (2641570): wrapper (7.7.26015): starting
02:52:52 (2641570): wrapper: running run_atlas (--nthreads 4)
[2026-03-10 02:52:52] Arguments: --nthreads 4
[2026-03-10 02:52:52] Threads: 4
[2026-03-10 02:52:52] Checking for CVMFS
[2026-03-10 02:52:52] No cvmfs_config command found, will try listing directly
[2026-03-10 02:52:52] CVMFS is ok
[2026-03-10 02:52:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-10 02:52:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-10 02:52:52] Further information can be found at the LHC@home message board.
[2026-03-10 02:52:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-10 02:52:52] Checking for apptainer binary...
[2026-03-10 02:52:52] which: no apptainer in ((null))
[2026-03-10 02:52:52] apptainer is not installed, using version from CVMFS
[2026-03-10 02:52:52] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-10 02:52:52] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot44/slots/12/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut23.grid.cesnet.cz
[2026-03-10 02:52:52] apptainer works
[2026-03-10 02:52:52] Set ATHENA_PROC_NUMBER=4
[2026-03-10 02:52:52] Set ATHENA_CORE_NUMBER=4
[2026-03-10 02:52:52] Starting ATLAS job with PandaID=7047150319
[2026-03-10 02:52:52] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot44/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-10 05:05:24]  *** The last 200 lines of the pilot log: ***
[2026-03-10 05:05:24] 2026-03-10 04:04:17,908 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-10 05:05:24] 2026-03-10 04:04:17,908 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-10 05:05:24] 2026-03-10 04:04:17,909 | INFO     | fitting pss+swap vs Time
[2026-03-10 05:05:24] 2026-03-10 04:04:17,909 | INFO     | sum of square deviations: 665612480.0
[2026-03-10 05:05:24] 2026-03-10 04:04:17,910 | INFO     | sum of deviations: 15179007468.0
[2026-03-10 05:05:24] 2026-03-10 04:04:17,910 | INFO     | mean x: 1773111509.0
[2026-03-10 05:05:24] 2026-03-10 04:04:17,910 | INFO     | mean y: 2327654.5581395347
[2026-03-10 05:05:24] 2026-03-10 04:04:17,910 | INFO     | intersect: -40432720733.81906
[2026-03-10 05:05:24] 2026-03-10 04:04:17,910 | INFO     | chi2: 1.1121112110340376
[2026-03-10 05:05:24] 2026-03-10 04:04:17,910 | INFO     | sum of square deviations: 591173875.0
[2026-03-10 05:05:24] 2026-03-10 04:04:17,910 | INFO     | sum of deviations: 14379667341.500002
[2026-03-10 05:05:24] 2026-03-10 04:04:17,910 | INFO     | mean x: 1773111356.5
[2026-03-10 05:05:24] 2026-03-10 04:04:17,910 | INFO     | mean y: 2326016.0887096776
[2026-03-10 05:05:24] 2026-03-10 04:04:17,910 | INFO     | intersect: -43126696669.336655
[2026-03-10 05:05:24] 2026-03-10 04:04:17,911 | INFO     | chi2: 1.1133491031614735
[2026-03-10 05:05:24] 2026-03-10 04:04:17,911 | INFO     | current chi2=1.1133491031614735 (change=-0.11131010236690893 %)
[2026-03-10 05:05:24] 2026-03-10 04:04:17,911 | INFO     | right removable region: 123
[2026-03-10 05:05:24] 2026-03-10 04:04:17,911 | INFO     | sum of square deviations: 591173875.0
[2026-03-10 05:05:24] 2026-03-10 04:04:17,911 | INFO     | sum of deviations: 2209931607.0
[2026-03-10 05:05:24] 2026-03-10 04:04:17,911 | INFO     | mean x: 1773111661.5
[2026-03-10 05:05:24] 2026-03-10 04:04:17,911 | INFO     | mean y: 2353591.580645161
[2026-03-10 05:05:24] 2026-03-10 04:04:17,911 | INFO     | intersect: -6625908700.099843
[2026-03-10 05:05:24] 2026-03-10 04:04:17,911 | INFO     | chi2: 0.0008470785626823476
[2026-03-10 05:05:24] 2026-03-10 04:04:17,911 | INFO     | current chi2=0.0008470785626823476 (change=99.92383148786939 %)
[2026-03-10 05:05:24] 2026-03-10 04:04:17,911 | INFO     | sum of square deviations: 522502820.0
[2026-03-10 05:05:24] 2026-03-10 04:04:17,912 | INFO     | sum of deviations: 1616192742.9999998
[2026-03-10 05:05:24] 2026-03-10 04:04:17,912 | INFO     | mean x: 1773111814.0
[2026-03-10 05:05:24] 2026-03-10 04:04:17,912 | INFO     | mean y: 2354897.43697479
[2026-03-10 05:05:24] 2026-03-10 04:04:17,912 | INFO     | intersect: -5482190518.632484
[2026-03-10 05:05:24] 2026-03-10 04:04:17,912 | INFO     | chi2: 0.00033897429042039
[2026-03-10 05:05:24] 2026-03-10 04:04:17,912 | INFO     | current chi2=0.00033897429042039 (change=59.98313434506021 %)
[2026-03-10 05:05:24] 2026-03-10 04:04:17,912 | INFO     | sum of square deviations: 459366752.5
[2026-03-10 05:05:24] 2026-03-10 04:04:17,912 | INFO     | sum of deviations: 1565045371.5000002
[2026-03-10 05:05:24] 2026-03-10 04:04:17,912 | INFO     | mean x: 1773111966.5
[2026-03-10 05:05:24] 2026-03-10 04:04:17,912 | INFO     | mean y: 2355019.0789473685
[2026-03-10 05:05:24] 2026-03-10 04:04:17,912 | INFO     | intersect: -6038571236.945837
[2026-03-10 05:05:24] 2026-03-10 04:04:17,912 | INFO     | chi2: 0.0002677539960748966
[2026-03-10 05:05:24] 2026-03-10 04:04:17,912 | INFO     | current chi2=0.0002677539960748966 (change=21.010529812502085 %)
[2026-03-10 05:05:24] 2026-03-10 04:04:17,913 | INFO     | left removable region: 30
[2026-03-10 05:05:24] 2026-03-10 04:04:17,913 | INFO     | sum of square deviations: 249388862.0
[2026-03-10 05:05:24] 2026-03-10 04:04:17,913 | INFO     | sum of deviations: 1054236403.9999999
[2026-03-10 05:05:24] 2026-03-10 04:04:17,913 | INFO     | mean x: 1773112241.0
[2026-03-10 05:05:24] 2026-03-10 04:04:17,913 | INFO     | mean y: 2355103.580645161
[2026-03-10 05:05:24] 2026-03-10 04:04:17,913 | INFO     | intersect: -7493085782.789898
[2026-03-10 05:05:24] 2026-03-10 04:04:17,913 | INFO     | chi2: 7.320142486017903e-05
[2026-03-10 05:05:24] 2026-03-10 04:04:17,913 | INFO     | current memory leak: 4.23 B/s (using 93 data points, chi2=0.00)
[2026-03-10 05:05:24] 2026-03-10 04:04:17,913 | INFO     | could have reported an average CPU frequency of 3572 MHz (8 samples)
[2026-03-10 05:05:24] 2026-03-10 04:04:17,913 | INFO     | ..............................
[2026-03-10 05:05:24] 2026-03-10 04:04:17,913 | INFO     | . Timing measurements:
[2026-03-10 05:05:24] 2026-03-10 04:04:17,913 | INFO     | . get job = 0 s
[2026-03-10 05:05:24] 2026-03-10 04:04:17,913 | INFO     | . initial setup = 4 s
[2026-03-10 05:05:24] 2026-03-10 04:04:17,913 | INFO     | . payload setup = 4 s
[2026-03-10 05:05:24] 2026-03-10 04:04:17,913 | INFO     | . stage-in = 0 s
[2026-03-10 05:05:24] 2026-03-10 04:04:17,914 | INFO     | . payload execution = 7850 s
[2026-03-10 05:05:24] 2026-03-10 04:04:17,914 | INFO     | . stage-out = 0 s
[2026-03-10 05:05:24] 2026-03-10 04:04:17,914 | INFO     | . log creation = 0 s
[2026-03-10 05:05:24] 2026-03-10 04:04:17,914 | INFO     | ..............................
[2026-03-10 05:05:24] 2026-03-10 04:04:17,960 | INFO     | 
[2026-03-10 05:05:24] 2026-03-10 04:04:17,960 | INFO     | job summary report
[2026-03-10 05:05:24] 2026-03-10 04:04:17,960 | INFO     | --------------------------------------------------
[2026-03-10 05:05:24] 2026-03-10 04:04:17,960 | INFO     | PanDA job id: 7047150319
[2026-03-10 05:05:24] 2026-03-10 04:04:17,960 | INFO     | task id: 48998032
[2026-03-10 05:05:24] 2026-03-10 04:04:17,960 | INFO     | errors: (none)
[2026-03-10 05:05:24] 2026-03-10 04:04:17,960 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-10 05:05:24] 2026-03-10 04:04:17,960 | INFO     | pilot state: finished 
[2026-03-10 05:05:24] 2026-03-10 04:04:17,960 | INFO     | transexitcode: 0
[2026-03-10 05:05:24] 2026-03-10 04:04:17,960 | INFO     | exeerrorcode: 0
[2026-03-10 05:05:24] 2026-03-10 04:04:17,960 | INFO     | exeerrordiag: 
[2026-03-10 05:05:24] 2026-03-10 04:04:17,960 | INFO     | exitcode: 0
[2026-03-10 05:05:24] 2026-03-10 04:04:17,960 | INFO     | exitmsg: OK
[2026-03-10 05:05:24] 2026-03-10 04:04:17,960 | INFO     | cpuconsumptiontime: 30216 s
[2026-03-10 05:05:24] 2026-03-10 04:04:17,960 | INFO     | nevents: 400
[2026-03-10 05:05:24] 2026-03-10 04:04:17,960 | INFO     | neventsw: 0
[2026-03-10 05:05:24] 2026-03-10 04:04:17,960 | INFO     | pid: 2669381
[2026-03-10 05:05:24] 2026-03-10 04:04:17,960 | INFO     | pgrp: 2669381
[2026-03-10 05:05:24] 2026-03-10 04:04:17,960 | INFO     | corecount: 4
[2026-03-10 05:05:24] 2026-03-10 04:04:17,960 | INFO     | event service: False
[2026-03-10 05:05:24] 2026-03-10 04:04:17,960 | INFO     | sizes: {0: 2280235, 11: 2280235, 7859: 2307991, 7860: 2317013, 7861: 2317069, 7862: 2317263}
[2026-03-10 05:05:24] 2026-03-10 04:04:17,961 | INFO     | --------------------------------------------------
[2026-03-10 05:05:24] 2026-03-10 04:04:17,961 | INFO     | 
[2026-03-10 05:05:24] 2026-03-10 04:04:17,961 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot44/slots/12
[2026-03-10 05:05:24] 2026-03-10 04:04:17,981 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-10 05:05:24] 2026-03-10 04:04:17,981 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-10 05:05:24] 2026-03-10 04:04:17,981 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-10 05:05:24] 2026-03-10 04:04:17,981 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-10 05:05:24] 2026-03-10 04:04:17,981 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-10 05:05:24] 2026-03-10 04:04:17,981 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-10 05:05:24] 2026-03-10 04:04:17,981 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-10 05:05:24] 2026-03-10 04:04:17,981 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-10 05:05:24] 2026-03-10 04:04:17,981 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-10 05:05:24] 2026-03-10 04:04:17,981 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-10 05:05:24] 2026-03-10 04:04:17,981 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-10 05:05:24] 2026-03-10 04:04:17,981 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-10 05:05:24] 2026-03-10 04:04:17,982 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-10 05:05:24] 2026-03-10 04:04:17,982 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-10 05:05:24] 2026-03-10 04:04:17,982 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-10 05:05:24] 2026-03-10 04:04:17,982 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-10 05:05:24] 2026-03-10 04:04:17,982 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-10 05:05:24] 2026-03-10 04:04:17,982 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-10 05:05:24] 2026-03-10 04:04:17,982 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-10 05:05:24] 2026-03-10 04:04:17,982 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-10 05:05:24] 2026-03-10 04:04:17,982 | INFO     | job 7047150319 has completed (purged errors)
[2026-03-10 05:05:24] 2026-03-10 04:04:17,982 | INFO     | overall cleanup function is called
[2026-03-10 05:05:24] 2026-03-10 04:04:18,988 | INFO     | --- collectZombieJob: --- 10, [2669381]
[2026-03-10 05:05:24] 2026-03-10 04:04:18,989 | INFO     | zombie collector waiting for pid 2669381
[2026-03-10 05:05:24] 2026-03-10 04:04:18,989 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-10 05:05:24] 2026-03-10 04:04:18,989 | INFO     | collected zombie processes
[2026-03-10 05:05:24] 2026-03-10 04:04:18,989 | INFO     | will attempt to kill all subprocesses of pid=2669381
[2026-03-10 05:05:24] 2026-03-10 04:04:20,281 | INFO     | PID=2649241 has CPU usage=9.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-10 05:05:24] 2026-03-10 04:04:20,282 | INFO     | .. there are 62 such processes running
[2026-03-10 05:05:24] 2026-03-10 04:04:20,846 | WARNING  | process 2669381 can no longer be monitored (due to stat problems) - aborting
[2026-03-10 05:05:24] 2026-03-10 04:04:20,903 | INFO     | process IDs to be killed: [2669381] (in reverse order)
[2026-03-10 05:05:24] 2026-03-10 04:04:21,164 | WARNING  | found no corresponding commands to process id(s)
[2026-03-10 05:05:24] 2026-03-10 04:04:21,164 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-10 05:05:24] 2026-03-10 04:04:21,267 | INFO     | did not find any defunct processes belonging to 2669381
[2026-03-10 05:05:24] 2026-03-10 04:04:21,299 | INFO     | using path: /var/lib/boinc/var/slot44/slots/12/memory_monitor_summary.json (trf name=prmon)
[2026-03-10 05:05:24] 2026-03-10 04:04:21,327 | INFO     | did not find any defunct processes belonging to 2669381
[2026-03-10 05:05:24] 2026-03-10 04:04:21,327 | INFO     | ready for new job
[2026-03-10 05:05:24] 2026-03-10 04:04:21,327 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-10 05:05:24] 2026-03-10 04:04:21,329 | INFO     | **************************************
[2026-03-10 05:05:24] 2026-03-10 04:04:21,329 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-10 05:05:24] 2026-03-10 04:04:21,329 | INFO     | **************************************
[2026-03-10 05:05:24] 2026-03-10 04:04:21,329 | INFO     | 
[2026-03-10 05:05:24] 2026-03-10 04:04:21,339 | INFO     | architecture information:
[2026-03-10 05:05:24] 2026-03-10 04:04:21,340 | INFO     | executing command: cat /etc/os-release
[2026-03-10 05:05:24] 2026-03-10 04:04:21,355 | INFO     | cat /etc/os-release:
[2026-03-10 05:05:24] NAME="CentOS Linux"
[2026-03-10 05:05:24] VERSION="7 (Core)"
[2026-03-10 05:05:24] ID="centos"
[2026-03-10 05:05:24] ID_LIKE="rhel fedora"
[2026-03-10 05:05:24] VERSION_ID="7"
[2026-03-10 05:05:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-10 05:05:24] ANSI_COLOR="0;31"
[2026-03-10 05:05:24] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-10 05:05:24] HOME_URL="https://www.centos.org/"
[2026-03-10 05:05:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-10 05:05:24] 
[2026-03-10 05:05:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-10 05:05:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-10 05:05:24] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-10 05:05:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-10 05:05:24] 
[2026-03-10 05:05:24] 2026-03-10 04:04:21,356 | INFO     | **************************************
[2026-03-10 05:05:24] 2026-03-10 04:04:21,776 | INFO     | number of running child processes to parent process 2669381: 1
[2026-03-10 05:05:24] 2026-03-10 04:04:21,776 | INFO     | maximum number of monitored processes: 6
[2026-03-10 05:05:24] 2026-03-10 04:04:21,776 | INFO     | aborting job monitoring since job object (job id=7047150319) has expired
[2026-03-10 05:05:24] 2026-03-10 04:04:21,858 | INFO     | executing command: df -mP /var/lib/boinc/var/slot44/slots/12
[2026-03-10 05:05:24] 2026-03-10 04:04:21,874 | INFO     | sufficient remaining disk space (21307064320 B)
[2026-03-10 05:05:24] 2026-03-10 04:04:21,874 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-10 05:05:24] 2026-03-10 04:04:21,875 | INFO     | current server update state: UPDATING_FINAL
[2026-03-10 05:05:24] 2026-03-10 04:04:21,875 | INFO     | update_server=False
[2026-03-10 05:05:24] 2026-03-10 04:04:21,875 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-10 05:05:24] 2026-03-10 04:04:21,875 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-10 05:05:24] 2026-03-10 04:04:21,875 | INFO     | will abort loop
[2026-03-10 05:05:24] 2026-03-10 04:04:21,875 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-10 05:05:24] 2026-03-10 04:04:21,948 | INFO     | all payload control threads have been joined
[2026-03-10 05:05:24] 2026-03-10 04:04:22,066 | INFO     | all job control threads have been joined
[2026-03-10 05:05:24] 2026-03-10 04:04:22,230 | INFO     | all data control threads have been joined
[2026-03-10 05:05:24] 2026-03-10 04:04:22,880 | INFO     | [job] retrieve thread has finished
[2026-03-10 05:05:24] 2026-03-10 04:04:22,880 | INFO     | [job] job monitor thread has finished
[2026-03-10 05:05:24] 2026-03-10 04:04:22,953 | INFO     | [payload] control thread has finished
[2026-03-10 05:05:24] 2026-03-10 04:04:22,970 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-10 05:05:24] 2026-03-10 04:04:23,072 | INFO     | [job] control thread has finished
[2026-03-10 05:05:24] 2026-03-10 04:04:23,236 | INFO     | [data] control thread has finished
[2026-03-10 05:05:24] 2026-03-10 04:04:23,269 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-10 05:05:24] 2026-03-10 04:04:23,386 | INFO     | [job] validate thread has finished
[2026-03-10 05:05:24] 2026-03-10 04:04:23,428 | INFO     | [payload] failed_post thread has finished
[2026-03-10 05:05:24] 2026-03-10 04:04:23,486 | INFO     | [job] create_data_payload thread has finished
[2026-03-10 05:05:24] 2026-03-10 04:04:23,543 | INFO     | [payload] validate_pre thread has finished
[2026-03-10 05:05:24] 2026-03-10 04:04:23,653 | INFO     | [data] copytool_in thread has finished
[2026-03-10 05:05:24] 2026-03-10 04:04:23,721 | INFO     | [payload] execute_payloads thread has finished
[2026-03-10 05:05:24] 2026-03-10 04:04:23,881 | INFO     | [data] copytool_out thread has finished
[2026-03-10 05:05:24] 2026-03-10 04:04:23,975 | INFO     | [job] queue monitor thread has finished
[2026-03-10 05:05:24] 2026-03-10 04:04:24,240 | INFO     | [payload] validate_post thread has finished
[2026-03-10 05:05:24] 2026-03-10 04:04:27,274 | INFO     | [data] queue_monitor thread has finished
[2026-03-10 05:05:24] 2026-03-10 04:04:32,281 | INFO     | job.realtimelogging is not enabled
[2026-03-10 05:05:24] 2026-03-10 04:04:33,285 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-10 05:05:24] 2026-03-10 04:04:52,774 | INFO     | PID=2649241 has CPU usage=10.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-10 05:05:24] 2026-03-10 04:04:52,774 | INFO     | .. there are 61 such processes running
[2026-03-10 05:05:24] 2026-03-10 04:04:52,775 | INFO     | found 0 job(s) in 20 queues
[2026-03-10 05:05:24] 2026-03-10 04:04:52,775 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-10 05:05:24] 2026-03-10 04:04:52,775 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-10 05:05:24] 2026-03-10 04:05:18,003 | INFO     | [monitor] cgroup control has ended
[2026-03-10 05:05:24] 2026-03-10 04:05:19,371 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22667642931008)>', '<ExcThread(monitor, started 22667391653632)>']
[2026-03-10 05:05:24] 2026-03-10 04:05:19,904 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-10 05:05:24] 2026-03-10 04:05:19,905 | INFO     | [monitor] control thread has ended
[2026-03-10 05:05:24] 2026-03-10 04:05:24,396 | INFO     | all workflow threads have been joined
[2026-03-10 05:05:24] 2026-03-10 04:05:24,397 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-10 05:05:24] 2026-03-10 04:05:24,397 | INFO     | traces error code: 0
[2026-03-10 05:05:24] 2026-03-10 04:05:24,397 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-10 05:05:24] 2026-03-10 04:05:24,603 [wrapper] ==== pilot stdout END ====
[2026-03-10 05:05:24] 2026-03-10 04:05:24,606 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-10 05:05:24] 2026-03-10 04:05:24,607 [wrapper] pilotpid: 2649241
[2026-03-10 05:05:24] 2026-03-10 04:05:24,609 [wrapper] Pilot exit status: 0
[2026-03-10 05:05:24] 2026-03-10 04:05:24,620 [wrapper] pandaids: 7047150319
[2026-03-10 05:05:24] 2026-03-10 04:05:24,727 [wrapper] cleanup supervisor_pilot 3942677 2649242
[2026-03-10 05:05:24] 2026-03-10 04:05:24,730 [wrapper] Test setup, not cleaning
[2026-03-10 05:05:24] 2026-03-10 04:05:24,733 [wrapper] apfmon messages muted
[2026-03-10 05:05:24] 2026-03-10 04:05:24,735 [wrapper] ==== wrapper stdout END ====
[2026-03-10 05:05:24] 2026-03-10 04:05:24,737 [wrapper] ==== wrapper stderr END ====
[2026-03-10 05:05:24]  *** Error codes and diagnostics ***
[2026-03-10 05:05:24]     "exeErrorCode": 0,
[2026-03-10 05:05:24]     "exeErrorDiag": "",
[2026-03-10 05:05:24]     "pilotErrorCode": 0,
[2026-03-10 05:05:24]     "pilotErrorDiag": "",
[2026-03-10 05:05:24]  *** Listing of results directory ***
[2026-03-10 05:05:24] total 644932
[2026-03-10 05:05:24] -rw-r--r--. 1 boinc boinc    584627 Mar  9 11:57 pilot3.tar.gz
[2026-03-10 05:05:24] -rwx------. 1 boinc boinc     36322 Mar  9 11:59 runpilot2-wrapper.sh
[2026-03-10 05:05:24] -rw-r--r--. 1 boinc boinc      5111 Mar  9 12:01 queuedata.json
[2026-03-10 05:05:24] -rw-r--r--. 1 boinc boinc       100 Mar 10 02:52 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-10 05:05:24] -rwxr-xr-x. 1 boinc boinc      7986 Mar 10 02:52 run_atlas
[2026-03-10 05:05:24] -rw-r--r--. 1 boinc boinc       105 Mar 10 02:52 job.xml
[2026-03-10 05:05:24] -rw-r--r--. 1 boinc boinc      6707 Mar 10 02:52 init_data.xml
[2026-03-10 05:05:24] -rw-r--r--. 2 boinc boinc 358797083 Mar 10 02:52 EVNT.48998030._000004.pool.root.1
[2026-03-10 05:05:24] -rw-r--r--. 2 boinc boinc     15845 Mar 10 02:52 start_atlas.sh
[2026-03-10 05:05:24] drwxrwx--x. 2 boinc boinc      4096 Mar 10 02:52 shared
[2026-03-10 05:05:24] -rw-r--r--. 2 boinc boinc    597938 Mar 10 02:52 input.tar.gz
[2026-03-10 05:05:24] -rw-r--r--. 1 boinc boinc         0 Mar 10 02:52 boinc_lockfile
[2026-03-10 05:05:24] -rw-r--r--. 1 boinc boinc      2556 Mar 10 02:52 pandaJob.out
[2026-03-10 05:05:24] -rw-------. 1 boinc boinc   1002338 Mar 10 02:53 agis_schedconf.cvmfs.json
[2026-03-10 05:05:24] -rw-------. 1 boinc boinc   1511578 Mar 10 02:53 agis_ddmendpoints.agis.ALL.json
[2026-03-10 05:05:24] -rw-------. 1 boinc boinc       444 Mar 10 02:53 workernode_map.json
[2026-03-10 05:05:24] drwx------. 5 boinc boinc      4096 Mar 10 02:53 pilot3
[2026-03-10 05:05:24] -rw-r--r--. 1 boinc boinc       531 Mar 10 05:03 boinc_task_state.xml
[2026-03-10 05:05:24] -rw-------. 1 boinc boinc 294787881 Mar 10 05:03 HITS.48998032._000095.pool.root.1
[2026-03-10 05:05:24] -rw-------. 1 boinc boinc      1031 Mar 10 05:04 memory_monitor_summary.json
[2026-03-10 05:05:24] -rw-------. 1 boinc boinc    323385 Mar 10 05:04 log.48998032._000095.job.log.tgz.1
[2026-03-10 05:05:24] -rw-------. 1 boinc boinc      6345 Mar 10 05:04 heartbeat.json
[2026-03-10 05:05:24] -rw-------. 1 boinc boinc        95 Mar 10 05:04 pilot_heartbeat.json
[2026-03-10 05:05:24] -rw-r--r--. 1 boinc boinc      8192 Mar 10 05:05 boinc_mmap_file
[2026-03-10 05:05:24] -rw-r--r--. 1 boinc boinc        27 Mar 10 05:05 wrapper_checkpoint.txt
[2026-03-10 05:05:24] -rw-------. 1 boinc boinc      5193 Mar 10 05:05 pilotlog.txt
[2026-03-10 05:05:24] -rw-------. 1 boinc boinc   1126104 Mar 10 05:05 log.48998032._000095.job.log.1
[2026-03-10 05:05:24] -rw-------. 1 boinc boinc       357 Mar 10 05:05 output.list
[2026-03-10 05:05:24] -rw-r--r--. 1 boinc boinc       620 Mar 10 05:05 runtime_log
[2026-03-10 05:05:24] -rw-------. 1 boinc boinc   1464320 Mar 10 05:05 result.tar.gz
[2026-03-10 05:05:24] -rw-r--r--. 1 boinc boinc      9221 Mar 10 05:05 runtime_log.err
[2026-03-10 05:05:24] -rw-------. 1 boinc boinc       663 Mar 10 05:05 D3yMDmdVnJ9n9Rq4apOajLDm4fhM0noT9bVooX4SDmHbZLDm7zX9Um.diag
[2026-03-10 05:05:24] -rw-r--r--. 1 boinc boinc     20976 Mar 10 05:05 stderr.txt
[2026-03-10 05:05:24] HITS file was successfully produced:
[2026-03-10 05:05:24] -rw-------. 1 boinc boinc 294787881 Mar 10 05:03 shared/HITS.pool.root.1
[2026-03-10 05:05:24]  *** Contents of shared directory: ***
[2026-03-10 05:05:24] total 640308
[2026-03-10 05:05:24] -rw-r--r--. 2 boinc boinc 358797083 Mar 10 02:52 ATLAS.root_0
[2026-03-10 05:05:24] -rw-r--r--. 2 boinc boinc     15845 Mar 10 02:52 start_atlas.sh
[2026-03-10 05:05:24] -rw-r--r--. 2 boinc boinc    597938 Mar 10 02:52 input.tar.gz
[2026-03-10 05:05:24] -rw-------. 1 boinc boinc 294787881 Mar 10 05:03 HITS.pool.root.1
[2026-03-10 05:05:24] -rw-------. 1 boinc boinc   1464320 Mar 10 05:05 result.tar.gz
05:05:26 (2641570): run_atlas exited; CPU time 30548.602267
05:05:26 (2641570): called boinc_finish(0)

</stderr_txt>
]]>

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