Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:24:07 (1283167): wrapper (7.7.26015): starting
19:24:07 (1283167): wrapper: running run_atlas (--nthreads 4)
[2026-03-09 19:24:07] Arguments: --nthreads 4
[2026-03-09 19:24:07] Threads: 4
[2026-03-09 19:24:07] Checking for CVMFS
[2026-03-09 19:24:07] No cvmfs_config command found, will try listing directly
[2026-03-09 19:24:07] CVMFS is ok
[2026-03-09 19:24:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-09 19:24:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-09 19:24:07] Further information can be found at the LHC@home message board.
[2026-03-09 19:24:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-09 19:24:07] Checking for apptainer binary...
[2026-03-09 19:24:07] which: no apptainer in ((null))
[2026-03-09 19:24:07] apptainer is not installed, using version from CVMFS
[2026-03-09 19:24:07] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-09 19:24:08] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot32/slots/6/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut20.grid.cesnet.cz
[2026-03-09 19:24:08] apptainer works
[2026-03-09 19:24:08] Set ATHENA_PROC_NUMBER=4
[2026-03-09 19:24:08] Set ATHENA_CORE_NUMBER=4
[2026-03-09 19:24:08] Starting ATLAS job with PandaID=7047192077
[2026-03-09 19:24:08] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot32/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-09 21:14:36]  *** The last 200 lines of the pilot log: ***
[2026-03-09 21:14:36] 2026-03-09 20:13:54,271 | INFO     | extracted standard info from prmon json
[2026-03-09 21:14:36] 2026-03-09 20:13:54,271 | INFO     | extracted standard memory fields from prmon json
[2026-03-09 21:14:36] 2026-03-09 20:13:54,271 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-09 21:14:36] 2026-03-09 20:13:54,271 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-09 21:14:36] 2026-03-09 20:13:54,271 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-09 21:14:36] 2026-03-09 20:13:54,273 | INFO     | fitting pss+swap vs Time
[2026-03-09 21:14:36] 2026-03-09 20:13:54,273 | INFO     | sum of square deviations: 390582207.0
[2026-03-09 21:14:36] 2026-03-09 20:13:54,273 | INFO     | sum of deviations: 4022697612.5
[2026-03-09 21:14:36] 2026-03-09 20:13:54,273 | INFO     | mean x: 1773083943.5
[2026-03-09 21:14:36] 2026-03-09 20:13:54,273 | INFO     | mean y: 2295694.0833333335
[2026-03-09 21:14:36] 2026-03-09 20:13:54,273 | INFO     | intersect: -18259111042.961235
[2026-03-09 21:14:36] 2026-03-09 20:13:54,274 | INFO     | chi2: 1.960012967192161
[2026-03-09 21:14:36] 2026-03-09 20:13:54,274 | INFO     | sum of square deviations: 338804492.0
[2026-03-09 21:14:36] 2026-03-09 20:13:54,274 | INFO     | sum of deviations: 10523476488.000002
[2026-03-09 21:14:36] 2026-03-09 20:13:54,274 | INFO     | mean x: 1773083791.0
[2026-03-09 21:14:36] 2026-03-09 20:13:54,274 | INFO     | mean y: 2314073.9708737866
[2026-03-09 21:14:36] 2026-03-09 20:13:54,274 | INFO     | intersect: -55070762070.020775
[2026-03-09 21:14:36] 2026-03-09 20:13:54,274 | INFO     | chi2: 1.1135701561327729
[2026-03-09 21:14:36] 2026-03-09 20:13:54,274 | INFO     | current chi2=1.1135701561327729 (change=43.185571995065395 %)
[2026-03-09 21:14:36] 2026-03-09 20:13:54,274 | INFO     | sum of square deviations: 291817564.5
[2026-03-09 21:14:36] 2026-03-09 20:13:54,275 | INFO     | sum of deviations: 9940532977.0
[2026-03-09 21:14:36] 2026-03-09 20:13:54,275 | INFO     | mean x: 1773083638.5
[2026-03-09 21:14:36] 2026-03-09 20:13:54,275 | INFO     | mean y: 2312180.551020408
[2026-03-09 21:14:36] 2026-03-09 20:13:54,275 | INFO     | intersect: -60396370159.51901
[2026-03-09 21:14:36] 2026-03-09 20:13:54,275 | INFO     | chi2: 1.1154735129869906
[2026-03-09 21:14:36] 2026-03-09 20:13:54,275 | INFO     | current chi2=1.1154735129869906 (change=-0.17092383840706832 %)
[2026-03-09 21:14:36] 2026-03-09 20:13:54,275 | INFO     | right removable region: 97
[2026-03-09 21:14:36] 2026-03-09 20:13:54,275 | INFO     | sum of square deviations: 338804492.0
[2026-03-09 21:14:36] 2026-03-09 20:13:54,275 | INFO     | sum of deviations: -6408298758.000001
[2026-03-09 21:14:36] 2026-03-09 20:13:54,275 | INFO     | mean x: 1773084096.0
[2026-03-09 21:14:36] 2026-03-09 20:13:54,275 | INFO     | mean y: 2325533.4077669904
[2026-03-09 21:14:36] 2026-03-09 20:13:54,275 | INFO     | intersect: 33539226249.075832
[2026-03-09 21:14:36] 2026-03-09 20:13:54,275 | INFO     | chi2: 0.8808787927626475
[2026-03-09 21:14:36] 2026-03-09 20:13:54,275 | INFO     | current chi2=0.8808787927626475 (change=55.05750178660498 %)
[2026-03-09 21:14:36] 2026-03-09 20:13:54,276 | INFO     | sum of square deviations: 291817564.5
[2026-03-09 21:14:36] 2026-03-09 20:13:54,276 | INFO     | sum of deviations: -6251439271.0
[2026-03-09 21:14:36] 2026-03-09 20:13:54,276 | INFO     | mean x: 1773084248.5
[2026-03-09 21:14:36] 2026-03-09 20:13:54,276 | INFO     | mean y: 2325016.7959183673
[2026-03-09 21:14:36] 2026-03-09 20:13:54,276 | INFO     | intersect: 37986085592.881546
[2026-03-09 21:14:36] 2026-03-09 20:13:54,276 | INFO     | chi2: 0.8821399260073813
[2026-03-09 21:14:36] 2026-03-09 20:13:54,276 | INFO     | current chi2=0.8821399260073813 (change=-0.14316762477373907 %)
[2026-03-09 21:14:36] 2026-03-09 20:13:54,276 | INFO     | left removable region: 20
[2026-03-09 21:14:36] 2026-03-09 20:13:54,276 | INFO     | sum of square deviations: 141539398.0
[2026-03-09 21:14:36] 2026-03-09 20:13:54,276 | INFO     | sum of deviations: 120626890.00000012
[2026-03-09 21:14:36] 2026-03-09 20:13:54,276 | INFO     | mean x: 1773084218.0
[2026-03-09 21:14:36] 2026-03-09 20:13:54,276 | INFO     | mean y: 2346232.7922077924
[2026-03-09 21:14:36] 2026-03-09 20:13:54,276 | INFO     | intersect: -1508764015.9981837
[2026-03-09 21:14:36] 2026-03-09 20:13:54,276 | INFO     | chi2: 0.0007187259364511354
[2026-03-09 21:14:36] 2026-03-09 20:13:54,277 | INFO     | current memory leak: 0.85 B/s (using 77 data points, chi2=0.00)
[2026-03-09 21:14:36] 2026-03-09 20:13:54,281 | INFO     | could have reported an average CPU frequency of 3580 MHz (7 samples)
[2026-03-09 21:14:36] 2026-03-09 20:13:54,281 | INFO     | ..............................
[2026-03-09 21:14:36] 2026-03-09 20:13:54,281 | INFO     | . Timing measurements:
[2026-03-09 21:14:36] 2026-03-09 20:13:54,281 | INFO     | . get job = 0 s
[2026-03-09 21:14:36] 2026-03-09 20:13:54,281 | INFO     | . initial setup = 4 s
[2026-03-09 21:14:36] 2026-03-09 20:13:54,281 | INFO     | . payload setup = 5 s
[2026-03-09 21:14:36] 2026-03-09 20:13:54,281 | INFO     | . stage-in = 0 s
[2026-03-09 21:14:36] 2026-03-09 20:13:54,281 | INFO     | . payload execution = 6552 s
[2026-03-09 21:14:36] 2026-03-09 20:13:54,281 | INFO     | . stage-out = 0 s
[2026-03-09 21:14:36] 2026-03-09 20:13:54,281 | INFO     | . log creation = 0 s
[2026-03-09 21:14:36] 2026-03-09 20:13:54,281 | INFO     | ..............................
[2026-03-09 21:14:36] 2026-03-09 20:13:54,339 | INFO     | 
[2026-03-09 21:14:36] 2026-03-09 20:13:54,339 | INFO     | job summary report
[2026-03-09 21:14:36] 2026-03-09 20:13:54,339 | INFO     | --------------------------------------------------
[2026-03-09 21:14:36] 2026-03-09 20:13:54,339 | INFO     | PanDA job id: 7047192077
[2026-03-09 21:14:36] 2026-03-09 20:13:54,339 | INFO     | task id: 48998022
[2026-03-09 21:14:36] 2026-03-09 20:13:54,339 | INFO     | errors: (none)
[2026-03-09 21:14:36] 2026-03-09 20:13:54,339 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-09 21:14:36] 2026-03-09 20:13:54,339 | INFO     | pilot state: finished 
[2026-03-09 21:14:36] 2026-03-09 20:13:54,339 | INFO     | transexitcode: 0
[2026-03-09 21:14:36] 2026-03-09 20:13:54,340 | INFO     | exeerrorcode: 0
[2026-03-09 21:14:36] 2026-03-09 20:13:54,340 | INFO     | exeerrordiag: 
[2026-03-09 21:14:36] 2026-03-09 20:13:54,340 | INFO     | exitcode: 0
[2026-03-09 21:14:36] 2026-03-09 20:13:54,340 | INFO     | exitmsg: OK
[2026-03-09 21:14:36] 2026-03-09 20:13:54,340 | INFO     | cpuconsumptiontime: 24941 s
[2026-03-09 21:14:36] 2026-03-09 20:13:54,340 | INFO     | nevents: 400
[2026-03-09 21:14:36] 2026-03-09 20:13:54,340 | INFO     | neventsw: 0
[2026-03-09 21:14:36] 2026-03-09 20:13:54,340 | INFO     | pid: 1293496
[2026-03-09 21:14:36] 2026-03-09 20:13:54,340 | INFO     | pgrp: 1293496
[2026-03-09 21:14:36] 2026-03-09 20:13:54,340 | INFO     | corecount: 4
[2026-03-09 21:14:36] 2026-03-09 20:13:54,340 | INFO     | event service: False
[2026-03-09 21:14:36] 2026-03-09 20:13:54,340 | INFO     | sizes: {0: 2280298, 10: 2280298, 6560: 2307460, 6562: 2316480, 6563: 2316730}
[2026-03-09 21:14:36] 2026-03-09 20:13:54,340 | INFO     | --------------------------------------------------
[2026-03-09 21:14:36] 2026-03-09 20:13:54,340 | INFO     | 
[2026-03-09 21:14:36] 2026-03-09 20:13:54,340 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot32/slots/6
[2026-03-09 21:14:36] 2026-03-09 20:13:54,375 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-09 21:14:36] 2026-03-09 20:13:54,375 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-09 21:14:36] 2026-03-09 20:13:54,375 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-09 21:14:36] 2026-03-09 20:13:54,375 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-09 21:14:36] 2026-03-09 20:13:54,375 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-09 21:14:36] 2026-03-09 20:13:54,375 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-09 21:14:36] 2026-03-09 20:13:54,375 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-09 21:14:36] 2026-03-09 20:13:54,375 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-09 21:14:36] 2026-03-09 20:13:54,375 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-09 21:14:36] 2026-03-09 20:13:54,375 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-09 21:14:36] 2026-03-09 20:13:54,375 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-09 21:14:36] 2026-03-09 20:13:54,375 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-09 21:14:36] 2026-03-09 20:13:54,375 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-09 21:14:36] 2026-03-09 20:13:54,375 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-09 21:14:36] 2026-03-09 20:13:54,375 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-09 21:14:36] 2026-03-09 20:13:54,375 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-09 21:14:36] 2026-03-09 20:13:54,376 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-09 21:14:36] 2026-03-09 20:13:54,376 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-09 21:14:36] 2026-03-09 20:13:54,376 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-09 21:14:36] 2026-03-09 20:13:54,376 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-09 21:14:36] 2026-03-09 20:13:54,376 | INFO     | job 7047192077 has completed (purged errors)
[2026-03-09 21:14:36] 2026-03-09 20:13:54,376 | INFO     | overall cleanup function is called
[2026-03-09 21:14:36] 2026-03-09 20:13:55,383 | INFO     | --- collectZombieJob: --- 10, [1293496]
[2026-03-09 21:14:36] 2026-03-09 20:13:55,383 | INFO     | zombie collector waiting for pid 1293496
[2026-03-09 21:14:36] 2026-03-09 20:13:55,383 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-09 21:14:36] 2026-03-09 20:13:55,383 | INFO     | collected zombie processes
[2026-03-09 21:14:36] 2026-03-09 20:13:55,383 | INFO     | will attempt to kill all subprocesses of pid=1293496
[2026-03-09 21:14:36] 2026-03-09 20:13:55,829 | INFO     | process IDs to be killed: [1293496] (in reverse order)
[2026-03-09 21:14:36] 2026-03-09 20:13:56,102 | WARNING  | found no corresponding commands to process id(s)
[2026-03-09 21:14:36] 2026-03-09 20:13:56,102 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-09 21:14:36] 2026-03-09 20:13:56,131 | INFO     | did not find any defunct processes belonging to 1293496
[2026-03-09 21:14:36] 2026-03-09 20:13:56,160 | INFO     | did not find any defunct processes belonging to 1293496
[2026-03-09 21:14:36] 2026-03-09 20:13:56,160 | INFO     | ready for new job
[2026-03-09 21:14:36] 2026-03-09 20:13:56,160 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-09 21:14:36] 2026-03-09 20:13:56,161 | INFO     | **************************************
[2026-03-09 21:14:36] 2026-03-09 20:13:56,161 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-09 21:14:36] 2026-03-09 20:13:56,161 | INFO     | **************************************
[2026-03-09 21:14:36] 2026-03-09 20:13:56,161 | INFO     | 
[2026-03-09 21:14:36] 2026-03-09 20:13:56,167 | INFO     | architecture information:
[2026-03-09 21:14:36] 2026-03-09 20:13:56,175 | INFO     | executing command: cat /etc/os-release
[2026-03-09 21:14:36] 2026-03-09 20:13:56,192 | INFO     | cat /etc/os-release:
[2026-03-09 21:14:36] NAME="CentOS Linux"
[2026-03-09 21:14:36] VERSION="7 (Core)"
[2026-03-09 21:14:36] ID="centos"
[2026-03-09 21:14:36] ID_LIKE="rhel fedora"
[2026-03-09 21:14:36] VERSION_ID="7"
[2026-03-09 21:14:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-09 21:14:36] ANSI_COLOR="0;31"
[2026-03-09 21:14:36] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-09 21:14:36] HOME_URL="https://www.centos.org/"
[2026-03-09 21:14:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-09 21:14:36] 
[2026-03-09 21:14:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-09 21:14:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-09 21:14:36] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-09 21:14:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-09 21:14:36] 
[2026-03-09 21:14:36] 2026-03-09 20:13:56,193 | INFO     | **************************************
[2026-03-09 21:14:36] 2026-03-09 20:13:56,695 | INFO     | executing command: df -mP /var/lib/boinc/var/slot32/slots/6
[2026-03-09 21:14:36] 2026-03-09 20:13:56,709 | INFO     | sufficient remaining disk space (23234347008 B)
[2026-03-09 21:14:36] 2026-03-09 20:13:56,710 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-09 21:14:36] 2026-03-09 20:13:56,710 | INFO     | current server update state: UPDATING_FINAL
[2026-03-09 21:14:36] 2026-03-09 20:13:56,710 | INFO     | update_server=False
[2026-03-09 21:14:36] 2026-03-09 20:13:56,710 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-09 21:14:36] 2026-03-09 20:13:56,710 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-09 21:14:36] 2026-03-09 20:13:56,710 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-09 21:14:36] 2026-03-09 20:13:57,111 | INFO     | all payload control threads have been joined
[2026-03-09 21:14:36] 2026-03-09 20:13:57,329 | WARNING  | process 1293496 can no longer be monitored (due to stat problems) - aborting
[2026-03-09 21:14:36] 2026-03-09 20:13:57,443 | INFO     | all data control threads have been joined
[2026-03-09 21:14:36] 2026-03-09 20:13:57,696 | INFO     | using path: /var/lib/boinc/var/slot32/slots/6/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 21:14:36] 2026-03-09 20:13:57,715 | INFO     | [job] retrieve thread has finished
[2026-03-09 21:14:36] 2026-03-09 20:13:57,844 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-09 21:14:36] 2026-03-09 20:13:57,975 | INFO     | [payload] failed_post thread has finished
[2026-03-09 21:14:36] 2026-03-09 20:13:58,116 | INFO     | [payload] control thread has finished
[2026-03-09 21:14:36] 2026-03-09 20:13:58,318 | INFO     | all job control threads have been joined
[2026-03-09 21:14:36] 2026-03-09 20:13:58,380 | INFO     | number of running child processes to parent process 1293496: 1
[2026-03-09 21:14:36] 2026-03-09 20:13:58,380 | INFO     | maximum number of monitored processes: 6
[2026-03-09 21:14:36] 2026-03-09 20:13:58,381 | INFO     | aborting job monitoring since job object (job id=7047192077) has expired
[2026-03-09 21:14:36] 2026-03-09 20:13:58,381 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-09 21:14:36] 2026-03-09 20:13:58,381 | INFO     | will abort loop
[2026-03-09 21:14:36] 2026-03-09 20:13:58,448 | INFO     | [data] control thread has finished
[2026-03-09 21:14:36] 2026-03-09 20:13:58,489 | INFO     | [payload] execute_payloads thread has finished
[2026-03-09 21:14:36] 2026-03-09 20:13:58,699 | INFO     | [job] create_data_payload thread has finished
[2026-03-09 21:14:36] 2026-03-09 20:13:58,719 | INFO     | [data] copytool_out thread has finished
[2026-03-09 21:14:36] 2026-03-09 20:13:58,936 | INFO     | [job] validate thread has finished
[2026-03-09 21:14:36] 2026-03-09 20:13:58,948 | INFO     | [payload] validate_post thread has finished
[2026-03-09 21:14:36] 2026-03-09 20:13:59,050 | INFO     | [payload] validate_pre thread has finished
[2026-03-09 21:14:36] 2026-03-09 20:13:59,171 | INFO     | [data] copytool_in thread has finished
[2026-03-09 21:14:36] 2026-03-09 20:13:59,323 | INFO     | [job] control thread has finished
[2026-03-09 21:14:36] 2026-03-09 20:13:59,385 | INFO     | [job] job monitor thread has finished
[2026-03-09 21:14:36] 2026-03-09 20:13:59,391 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-09 21:14:36] 2026-03-09 20:14:00,396 | INFO     | [job] queue monitor thread has finished
[2026-03-09 21:14:36] 2026-03-09 20:14:00,718 | INFO     | [data] queue_monitor thread has finished
[2026-03-09 21:14:36] 2026-03-09 20:14:27,532 | INFO     | PID=1287729 has CPU usage=7.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-09 21:14:36] 2026-03-09 20:14:27,532 | INFO     | .. there are 61 such processes running
[2026-03-09 21:14:36] 2026-03-09 20:14:27,533 | INFO     | found 0 job(s) in 20 queues
[2026-03-09 21:14:36] 2026-03-09 20:14:27,533 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-09 21:14:36] 2026-03-09 20:14:27,533 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-09 21:14:36] 2026-03-09 20:14:30,366 | INFO     | [monitor] cgroup control has ended
[2026-03-09 21:14:36] 2026-03-09 20:14:31,372 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23348923569984)>', '<ExcThread(monitor, started 23348682958592)>']
[2026-03-09 21:14:36] 2026-03-09 20:14:31,556 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-09 21:14:36] 2026-03-09 20:14:31,556 | INFO     | [monitor] control thread has ended
[2026-03-09 21:14:36] 2026-03-09 20:14:36,397 | INFO     | all workflow threads have been joined
[2026-03-09 21:14:36] 2026-03-09 20:14:36,397 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-09 21:14:36] 2026-03-09 20:14:36,397 | INFO     | traces error code: 0
[2026-03-09 21:14:36] 2026-03-09 20:14:36,397 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-09 21:14:36] 2026-03-09 20:14:36,562 [wrapper] ==== pilot stdout END ====
[2026-03-09 21:14:36] 2026-03-09 20:14:36,568 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-09 21:14:36] 2026-03-09 20:14:36,570 [wrapper] pilotpid: 1287729
[2026-03-09 21:14:36] 2026-03-09 20:14:36,573 [wrapper] Pilot exit status: 0
[2026-03-09 21:14:36] 2026-03-09 20:14:36,582 [wrapper] pandaids: 7047192077
[2026-03-09 21:14:36] 2026-03-09 20:14:36,692 [wrapper] cleanup supervisor_pilot 2485263 1287730
[2026-03-09 21:14:36] 2026-03-09 20:14:36,695 [wrapper] Test setup, not cleaning
[2026-03-09 21:14:36] 2026-03-09 20:14:36,698 [wrapper] apfmon messages muted
[2026-03-09 21:14:36] 2026-03-09 20:14:36,701 [wrapper] ==== wrapper stdout END ====
[2026-03-09 21:14:36] 2026-03-09 20:14:36,703 [wrapper] ==== wrapper stderr END ====
[2026-03-09 21:14:36]  *** Error codes and diagnostics ***
[2026-03-09 21:14:36]     "exeErrorCode": 0,
[2026-03-09 21:14:36]     "exeErrorDiag": "",
[2026-03-09 21:14:36]     "pilotErrorCode": 0,
[2026-03-09 21:14:36]     "pilotErrorDiag": "",
[2026-03-09 21:14:36]  *** Listing of results directory ***
[2026-03-09 21:14:36] total 556292
[2026-03-09 21:14:36] -rw-r--r--. 1 boinc boinc      5111 Mar  9 11:57 queuedata.json
[2026-03-09 21:14:36] -rw-r--r--. 1 boinc boinc    584627 Mar  9 11:57 pilot3.tar.gz
[2026-03-09 21:14:36] -rwx------. 1 boinc boinc     36322 Mar  9 11:57 runpilot2-wrapper.sh
[2026-03-09 21:14:36] -rw-r--r--. 1 boinc boinc       100 Mar  9 19:24 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-09 21:14:36] -rwxr-xr-x. 1 boinc boinc      7986 Mar  9 19:24 run_atlas
[2026-03-09 21:14:36] -rw-r--r--. 1 boinc boinc       105 Mar  9 19:24 job.xml
[2026-03-09 21:14:36] -rw-r--r--. 2 boinc boinc 324991218 Mar  9 19:24 EVNT.48998020._000046.pool.root.1
[2026-03-09 21:14:36] -rw-r--r--. 2 boinc boinc     15845 Mar  9 19:24 start_atlas.sh
[2026-03-09 21:14:36] drwxrwx--x. 2 boinc boinc      4096 Mar  9 19:24 shared
[2026-03-09 21:14:36] -rw-r--r--. 2 boinc boinc    597958 Mar  9 19:24 input.tar.gz
[2026-03-09 21:14:36] -rw-r--r--. 1 boinc boinc      6705 Mar  9 19:24 init_data.xml
[2026-03-09 21:14:36] -rw-r--r--. 1 boinc boinc         0 Mar  9 19:24 boinc_lockfile
[2026-03-09 21:14:36] -rw-r--r--. 1 boinc boinc      2611 Mar  9 19:24 pandaJob.out
[2026-03-09 21:14:36] -rw-------. 1 boinc boinc   1002738 Mar  9 19:24 agis_schedconf.cvmfs.json
[2026-03-09 21:14:36] -rw-------. 1 boinc boinc   1511578 Mar  9 19:24 agis_ddmendpoints.agis.ALL.json
[2026-03-09 21:14:36] -rw-------. 1 boinc boinc       444 Mar  9 19:24 workernode_map.json
[2026-03-09 21:14:36] drwx------. 5 boinc boinc      4096 Mar  9 19:24 pilot3
[2026-03-09 21:14:36] -rw-------. 1 boinc boinc 238211549 Mar  9 21:13 HITS.48998022._001148.pool.root.1
[2026-03-09 21:14:36] -rw-------. 1 boinc boinc      1031 Mar  9 21:13 memory_monitor_summary.json
[2026-03-09 21:14:36] -rw-r--r--. 1 boinc boinc       529 Mar  9 21:13 boinc_task_state.xml
[2026-03-09 21:14:36] -rw-------. 1 boinc boinc    306382 Mar  9 21:13 log.48998022._001148.job.log.tgz.1
[2026-03-09 21:14:36] -rw-------. 1 boinc boinc      6349 Mar  9 21:13 heartbeat.json
[2026-03-09 21:14:36] -rw-r--r--. 1 boinc boinc      8192 Mar  9 21:14 boinc_mmap_file
[2026-03-09 21:14:36] -rw-r--r--. 1 boinc boinc        27 Mar  9 21:14 wrapper_checkpoint.txt
[2026-03-09 21:14:36] -rw-------. 1 boinc boinc        95 Mar  9 21:14 pilot_heartbeat.json
[2026-03-09 21:14:36] -rw-------. 1 boinc boinc      5361 Mar  9 21:14 pilotlog.txt
[2026-03-09 21:14:36] -rw-------. 1 boinc boinc    946361 Mar  9 21:14 log.48998022._001148.job.log.1
[2026-03-09 21:14:36] -rw-------. 1 boinc boinc       357 Mar  9 21:14 output.list
[2026-03-09 21:14:36] -rw-r--r--. 1 boinc boinc       620 Mar  9 21:14 runtime_log
[2026-03-09 21:14:36] -rw-------. 1 boinc boinc   1269760 Mar  9 21:14 result.tar.gz
[2026-03-09 21:14:36] -rw-r--r--. 1 boinc boinc      9204 Mar  9 21:14 runtime_log.err
[2026-03-09 21:14:36] -rw-------. 1 boinc boinc       663 Mar  9 21:14 mTpKDmxTnJ9n9Rq4apOajLDm4fhM0noT9bVooX4SDmDXZLDmRpLQvn.diag
[2026-03-09 21:14:36] -rw-r--r--. 1 boinc boinc     20833 Mar  9 21:14 stderr.txt
[2026-03-09 21:14:36] HITS file was successfully produced:
[2026-03-09 21:14:36] -rw-------. 1 boinc boinc 238211549 Mar  9 21:13 shared/HITS.pool.root.1
[2026-03-09 21:14:36]  *** Contents of shared directory: ***
[2026-03-09 21:14:36] total 551856
[2026-03-09 21:14:36] -rw-r--r--. 2 boinc boinc 324991218 Mar  9 19:24 ATLAS.root_0
[2026-03-09 21:14:36] -rw-r--r--. 2 boinc boinc     15845 Mar  9 19:24 start_atlas.sh
[2026-03-09 21:14:36] -rw-r--r--. 2 boinc boinc    597958 Mar  9 19:24 input.tar.gz
[2026-03-09 21:14:36] -rw-------. 1 boinc boinc 238211549 Mar  9 21:13 HITS.pool.root.1
[2026-03-09 21:14:36] -rw-------. 1 boinc boinc   1269760 Mar  9 21:14 result.tar.gz
21:14:38 (1283167): run_atlas exited; CPU time 25227.175918
21:14:38 (1283167): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN