Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:53:48 (3287017): wrapper (7.7.26015): starting
02:53:48 (3287017): wrapper: running run_atlas (--nthreads 4)
[2026-03-10 02:53:48] Arguments: --nthreads 4
[2026-03-10 02:53:48] Threads: 4
[2026-03-10 02:53:48] Checking for CVMFS
[2026-03-10 02:53:48] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-10 02:53:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-10 02:53:48] Running cvmfs_config stat atlas.cern.ch
[2026-03-10 02:53:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-10 02:53:49] 2.9.2.0 41054 17911 103236 157097 0 50 30746351 36864000 0 130560 0 8085649 99.984 667189 9551 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-10 02:53:49] CVMFS is ok
[2026-03-10 02:53:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-10 02:53:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-10 02:53:49] Further information can be found at the LHC@home message board.
[2026-03-10 02:53:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-10 02:53:49] Checking for apptainer binary...
[2026-03-10 02:53:49] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-10 02:53:49] Running /usr/bin/apptainer --version
[2026-03-10 02:53:49] apptainer version 1.4.1-1.1
[2026-03-10 02:53:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-10 02:53:49] thA375
[2026-03-10 02:53:49] apptainer works
[2026-03-10 02:53:49] Set ATHENA_PROC_NUMBER=4
[2026-03-10 02:53:49] Set ATHENA_CORE_NUMBER=4
[2026-03-10 02:53:49] Starting ATLAS job with PandaID=7040372363
[2026-03-10 02:53:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-10 04:12:13]  *** The last 200 lines of the pilot log: ***
[2026-03-10 04:12:13] 2026-03-10 03:11:54,830 | INFO     | collected zombie processes
[2026-03-10 04:12:13] 2026-03-10 03:11:54,830 | INFO     | will attempt to kill all subprocesses of pid=3295647
[2026-03-10 04:12:13] 2026-03-10 03:11:54,885 | INFO     | process IDs to be killed: [3295647] (in reverse order)
[2026-03-10 04:12:13] 2026-03-10 03:11:54,922 | WARNING  | found no corresponding commands to process id(s)
[2026-03-10 04:12:13] 2026-03-10 03:11:54,922 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-10 04:12:13] 2026-03-10 03:11:54,925 | INFO     | did not find any defunct processes belonging to 3295647
[2026-03-10 04:12:13] 2026-03-10 03:11:54,926 | INFO     | did not find any defunct processes belonging to 3295647
[2026-03-10 04:12:13] 2026-03-10 03:11:54,926 | INFO     | ready for new job
[2026-03-10 04:12:13] 2026-03-10 03:11:54,927 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-10 04:12:13] 2026-03-10 03:11:54,927 | INFO     | **************************************
[2026-03-10 04:12:13] 2026-03-10 03:11:54,927 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-10 04:12:13] 2026-03-10 03:11:54,927 | INFO     | **************************************
[2026-03-10 04:12:13] 2026-03-10 03:11:54,927 | INFO     | 
[2026-03-10 04:12:13] 2026-03-10 03:11:54,928 | INFO     | architecture information:
[2026-03-10 04:12:13] 2026-03-10 03:11:54,928 | INFO     | executing command: cat /etc/os-release
[2026-03-10 04:12:13] 2026-03-10 03:11:54,943 | INFO     | cat /etc/os-release:
[2026-03-10 04:12:13] NAME="CentOS Linux"
[2026-03-10 04:12:13] VERSION="7 (Core)"
[2026-03-10 04:12:13] ID="centos"
[2026-03-10 04:12:13] ID_LIKE="rhel fedora"
[2026-03-10 04:12:13] VERSION_ID="7"
[2026-03-10 04:12:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-10 04:12:13] ANSI_COLOR="0;31"
[2026-03-10 04:12:13] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-10 04:12:13] HOME_URL="https://www.centos.org/"
[2026-03-10 04:12:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-10 04:12:13] 
[2026-03-10 04:12:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-10 04:12:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-10 04:12:13] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-10 04:12:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-10 04:12:13] 
[2026-03-10 04:12:13] 2026-03-10 03:11:54,943 | INFO     | **************************************
[2026-03-10 04:12:13] 2026-03-10 03:11:55,446 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-10 04:12:13] 2026-03-10 03:11:55,461 | INFO     | sufficient remaining disk space (225497317376 B)
[2026-03-10 04:12:13] 2026-03-10 03:11:55,462 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-10 04:12:13] 2026-03-10 03:11:55,462 | INFO     | current server update state: UPDATING_FINAL
[2026-03-10 04:12:13] 2026-03-10 03:11:55,462 | INFO     | update_server=False
[2026-03-10 04:12:13] 2026-03-10 03:11:55,462 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-10 04:12:13] 2026-03-10 03:11:55,462 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-10 04:12:13] 2026-03-10 03:11:55,462 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-10 04:12:13] 2026-03-10 03:11:55,462 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-10 04:12:13] 2026-03-10 03:11:55,462 | INFO     | found 0 job(s) in 20 queues
[2026-03-10 04:12:13] 2026-03-10 03:11:55,462 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-10 04:12:13] 2026-03-10 03:11:55,462 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-10 04:12:13] 2026-03-10 03:11:56,321 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-10 04:12:13] 2026-03-10 03:11:56,322 | INFO     | aborting loop
[2026-03-10 04:12:13] 2026-03-10 03:11:56,396 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-10 04:12:13] 2026-03-10 03:11:56,467 | INFO     | [job] retrieve thread has finished
[2026-03-10 04:12:13] 2026-03-10 03:11:56,468 | INFO     | [job] queue monitor thread has finished
[2026-03-10 04:12:13] 2026-03-10 03:11:56,556 | INFO     | all data control threads have been joined
[2026-03-10 04:12:13] 2026-03-10 03:11:56,674 | INFO     | [payload] failed_post thread has finished
[2026-03-10 04:12:13] 2026-03-10 03:11:56,772 | INFO     | all job control threads have been joined
[2026-03-10 04:12:13] 2026-03-10 03:11:56,936 | INFO     | all payload control threads have been joined
[2026-03-10 04:12:13] 2026-03-10 03:11:56,974 | INFO     | [payload] execute_payloads thread has finished
[2026-03-10 04:12:13] 2026-03-10 03:11:57,128 | INFO     | [job] validate thread has finished
[2026-03-10 04:12:13] 2026-03-10 03:11:57,212 | INFO     | [payload] validate_post thread has finished
[2026-03-10 04:12:13] 2026-03-10 03:11:57,228 | INFO     | [job] create_data_payload thread has finished
[2026-03-10 04:12:13] 2026-03-10 03:11:57,294 | INFO     | [payload] validate_pre thread has finished
[2026-03-10 04:12:13] 2026-03-10 03:11:57,327 | INFO     | [job] job monitor thread has finished
[2026-03-10 04:12:13] 2026-03-10 03:11:57,468 | INFO     | [data] copytool_in thread has finished
[2026-03-10 04:12:13] 2026-03-10 03:11:57,562 | INFO     | [data] control thread has finished
[2026-03-10 04:12:13] 2026-03-10 03:11:57,778 | INFO     | [job] control thread has finished
[2026-03-10 04:12:13] 2026-03-10 03:11:57,941 | INFO     | [payload] control thread has finished
[2026-03-10 04:12:13] 2026-03-10 03:11:58,402 | INFO     | [data] copytool_out thread has finished
[2026-03-10 04:12:13] 2026-03-10 03:11:59,469 | INFO     | [data] queue_monitor thread has finished
[2026-03-10 04:12:13] 2026-03-10 03:12:05,793 | INFO     | job.realtimelogging is not enabled
[2026-03-10 04:12:13] 2026-03-10 03:12:06,336 | INFO     | [monitor] cgroup control has ended
[2026-03-10 04:12:13] 2026-03-10 03:12:06,799 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-10 04:12:13] 2026-03-10 03:12:07,892 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140119104481088)>', '<ExcThread(monitor, started 140118325188352)>']
[2026-03-10 04:12:13] 2026-03-10 03:12:08,526 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-10 04:12:13] 2026-03-10 03:12:08,526 | INFO     | [monitor] control thread has ended
[2026-03-10 04:12:13] 2026-03-10 03:12:12,918 | INFO     | all workflow threads have been joined
[2026-03-10 04:12:13] 2026-03-10 03:12:12,918 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-10 04:12:13] 2026-03-10 03:12:12,918 | INFO     | traces error code: 0
[2026-03-10 04:12:13] 2026-03-10 03:12:12,918 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-10 04:12:13] 2026-03-10 03:12:12,988 [wrapper] ==== pilot stdout END ====
[2026-03-10 04:12:13] 2026-03-10 03:12:12,993 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-10 04:12:13] 2026-03-10 03:12:12,996 [wrapper] pilotpid: 3291132
[2026-03-10 04:12:13] 2026-03-10 03:12:13,000 [wrapper] Pilot exit status: 0
[2026-03-10 04:12:13] 2026-03-10 03:12:13,011 [wrapper] pandaids: 7040372363
[2026-03-10 04:12:13] 2026-03-10 03:12:13,034 [wrapper] cleanup supervisor_pilot 3302764 3291133
[2026-03-10 04:12:13] 2026-03-10 03:12:13,037 [wrapper] Test setup, not cleaning
[2026-03-10 04:12:13] 2026-03-10 03:12:13,041 [wrapper] apfmon messages muted
[2026-03-10 04:12:13] 2026-03-10 03:12:13,045 [wrapper] ==== wrapper stdout END ====
[2026-03-10 04:12:13] 2026-03-10 03:12:13,049 [wrapper] ==== wrapper stderr END ====
[2026-03-10 04:12:13]  *** Error codes and diagnostics ***
[2026-03-10 04:12:13]     "exeErrorCode": 0,
[2026-03-10 04:12:13]     "exeErrorDiag": "",
[2026-03-10 04:12:13]     "pilotErrorCode": 0,
[2026-03-10 04:12:13]     "pilotErrorDiag": "",
[2026-03-10 04:12:13]  *** Listing of results directory ***
[2026-03-10 04:12:13] total 504440
[2026-03-10 04:12:13] -rw-r--r-- 1 boinc boinc    584627 Mar  4 18:22 pilot3.tar.gz
[2026-03-10 04:12:13] -rwx------ 1 boinc boinc     36322 Mar  4 18:25 runpilot2-wrapper.sh
[2026-03-10 04:12:13] -rw-r--r-- 1 boinc boinc      5111 Mar  4 18:26 queuedata.json
[2026-03-10 04:12:13] -rw-r--r-- 1 boinc boinc       100 Mar 10 02:53 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-10 04:12:13] -rwxr-xr-x 1 boinc boinc      7986 Mar 10 02:53 run_atlas
[2026-03-10 04:12:13] -rw-r--r-- 1 boinc boinc       105 Mar 10 02:53 job.xml
[2026-03-10 04:12:13] -rw-r--r-- 2 boinc boinc 294158174 Mar 10 02:53 EVNT.48717224._000015.pool.root.1
[2026-03-10 04:12:13] drwxrwx--x 2 boinc boinc      4096 Mar 10 02:53 shared
[2026-03-10 04:12:13] -rw-r--r-- 2 boinc boinc    597951 Mar 10 02:53 input.tar.gz
[2026-03-10 04:12:13] -rw-r--r-- 2 boinc boinc     15845 Mar 10 02:53 start_atlas.sh
[2026-03-10 04:12:13] -rw-r--r-- 1 boinc boinc         0 Mar 10 02:53 boinc_setup_complete
[2026-03-10 04:12:13] -rw-r--r-- 1 boinc boinc      6369 Mar 10 02:53 init_data.xml
[2026-03-10 04:12:13] -rw-r--r-- 1 boinc boinc         0 Mar 10 02:53 boinc_lockfile
[2026-03-10 04:12:13] -rw-r--r-- 1 boinc boinc      2593 Mar 10 02:53 pandaJob.out
[2026-03-10 04:12:13] -rw------- 1 boinc boinc   1002338 Mar 10 02:53 agis_schedconf.cvmfs.json
[2026-03-10 04:12:13] -rw------- 1 boinc boinc   1511578 Mar 10 02:53 agis_ddmendpoints.agis.ALL.json
[2026-03-10 04:12:13] -rw------- 1 boinc boinc       427 Mar 10 02:54 workernode_map.json
[2026-03-10 04:12:13] drwx------ 5 boinc boinc      4096 Mar 10 02:54 pilot3
[2026-03-10 04:12:13] -rw------- 1 boinc boinc        95 Mar 10 04:11 pilot_heartbeat.json
[2026-03-10 04:12:13] -rw------- 1 boinc boinc 216576399 Mar 10 04:11 HITS.48973452._000361.pool.root.1
[2026-03-10 04:12:13] -rw-r--r-- 1 boinc boinc       529 Mar 10 04:11 boinc_task_state.xml
[2026-03-10 04:12:13] -rw------- 1 boinc boinc      1019 Mar 10 04:11 memory_monitor_summary.json
[2026-03-10 04:12:13] -rw------- 1 boinc boinc    259300 Mar 10 04:11 log.48973452._000361.job.log.tgz.1
[2026-03-10 04:12:13] -rw------- 1 boinc boinc      6305 Mar 10 04:11 heartbeat.json
[2026-03-10 04:12:13] -rw-r--r-- 1 boinc boinc      8192 Mar 10 04:12 boinc_mmap_file
[2026-03-10 04:12:13] -rw-r--r-- 1 boinc boinc        27 Mar 10 04:12 wrapper_checkpoint.txt
[2026-03-10 04:12:13] -rw------- 1 boinc boinc      4624 Mar 10 04:12 pilotlog.txt
[2026-03-10 04:12:13] -rw------- 1 boinc boinc    688081 Mar 10 04:12 log.48973452._000361.job.log.1
[2026-03-10 04:12:13] -rw------- 1 boinc boinc       357 Mar 10 04:12 output.list
[2026-03-10 04:12:13] -rw-r--r-- 1 boinc boinc       620 Mar 10 04:12 runtime_log
[2026-03-10 04:12:13] -rw------- 1 boinc boinc    962560 Mar 10 04:12 result.tar.gz
[2026-03-10 04:12:13] -rw-r--r-- 1 boinc boinc      8896 Mar 10 04:12 runtime_log.err
[2026-03-10 04:12:13] -rw------- 1 boinc boinc       657 Mar 10 04:12 PlELDmq94H9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmeELLDmYlE0bm.diag
[2026-03-10 04:12:13] -rw-r--r-- 1 boinc boinc     10294 Mar 10 04:12 stderr.txt
[2026-03-10 04:12:13] HITS file was successfully produced:
[2026-03-10 04:12:13] -rw------- 1 boinc boinc 216576399 Mar 10 04:11 shared/HITS.pool.root.1
[2026-03-10 04:12:13]  *** Contents of shared directory: ***
[2026-03-10 04:12:13] total 500316
[2026-03-10 04:12:13] -rw-r--r-- 2 boinc boinc 294158174 Mar 10 02:53 ATLAS.root_0
[2026-03-10 04:12:13] -rw-r--r-- 2 boinc boinc    597951 Mar 10 02:53 input.tar.gz
[2026-03-10 04:12:13] -rw-r--r-- 2 boinc boinc     15845 Mar 10 02:53 start_atlas.sh
[2026-03-10 04:12:13] -rw------- 1 boinc boinc 216576399 Mar 10 04:11 HITS.pool.root.1
[2026-03-10 04:12:13] -rw------- 1 boinc boinc    962560 Mar 10 04:12 result.tar.gz
04:12:14 (3287017): run_atlas exited; CPU time 17698.319702
04:12:14 (3287017): called boinc_finish(0)

</stderr_txt>
]]>

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