Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:22:02 (2592711): wrapper (7.7.26015): starting
22:22:02 (2592711): wrapper: running run_atlas (--nthreads 3)
[2026-03-09 22:22:02] Arguments: --nthreads 3
[2026-03-09 22:22:02] Threads: 3
[2026-03-09 22:22:02] Checking for CVMFS
[2026-03-09 22:22:02] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-09 22:22:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-09 22:22:03] Running cvmfs_config stat atlas.cern.ch
[2026-03-09 22:22:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-09 22:22:03] 2.9.2.0 37608 17508 93180 157090 3 49 30753139 36864000 0 130560 0 7190761 99.983 654954 13190 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-09 22:22:03] CVMFS is ok
[2026-03-09 22:22:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-09 22:22:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-09 22:22:03] Further information can be found at the LHC@home message board.
[2026-03-09 22:22:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-09 22:22:03] Checking for apptainer binary...
[2026-03-09 22:22:03] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-09 22:22:03] Running /usr/bin/apptainer --version
[2026-03-09 22:22:03] apptainer version 1.4.1-1.1
[2026-03-09 22:22:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-09 22:22:03] magicA246
[2026-03-09 22:22:03] apptainer works
[2026-03-09 22:22:03] Set ATHENA_PROC_NUMBER=3
[2026-03-09 22:22:03] Set ATHENA_CORE_NUMBER=3
[2026-03-09 22:22:03] Starting ATLAS job with PandaID=7034442311
[2026-03-09 22:22:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-09 23:52:31]  *** The last 200 lines of the pilot log: ***
[2026-03-09 23:52:31] 2026-03-09 22:51:59,230 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-09 23:52:31] 2026-03-09 22:51:59,230 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-09 23:52:31] 2026-03-09 22:51:59,230 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-09 23:52:31] 2026-03-09 22:51:59,230 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-09 23:52:31] 2026-03-09 22:51:59,230 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-09 23:52:31] 2026-03-09 22:51:59,230 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-09 23:52:31] 2026-03-09 22:51:59,230 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-09 23:52:31] 2026-03-09 22:51:59,230 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-09 23:52:31] 2026-03-09 22:51:59,230 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-09 23:52:31] 2026-03-09 22:51:59,230 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-09 23:52:31] 2026-03-09 22:51:59,230 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-09 23:52:31] 2026-03-09 22:51:59,230 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-09 23:52:31] 2026-03-09 22:51:59,230 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-09 23:52:31] 2026-03-09 22:51:59,230 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-09 23:52:31] 2026-03-09 22:51:59,230 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-09 23:52:31] 2026-03-09 22:51:59,230 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-09 23:52:31] 2026-03-09 22:51:59,230 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-09 23:52:31] 2026-03-09 22:51:59,230 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-09 23:52:31] 2026-03-09 22:51:59,230 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-09 23:52:31] 2026-03-09 22:51:59,230 | INFO     | job 7034442311 has completed (purged errors)
[2026-03-09 23:52:31] 2026-03-09 22:51:59,230 | INFO     | overall cleanup function is called
[2026-03-09 23:52:31] 2026-03-09 22:52:00,237 | INFO     | --- collectZombieJob: --- 10, [2601182]
[2026-03-09 23:52:31] 2026-03-09 22:52:00,237 | INFO     | zombie collector waiting for pid 2601182
[2026-03-09 23:52:31] 2026-03-09 22:52:00,237 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-09 23:52:31] 2026-03-09 22:52:00,237 | INFO     | collected zombie processes
[2026-03-09 23:52:31] 2026-03-09 22:52:00,237 | INFO     | will attempt to kill all subprocesses of pid=2601182
[2026-03-09 23:52:31] 2026-03-09 22:52:00,278 | INFO     | process IDs to be killed: [2601182] (in reverse order)
[2026-03-09 23:52:31] 2026-03-09 22:52:00,304 | WARNING  | found no corresponding commands to process id(s)
[2026-03-09 23:52:31] 2026-03-09 22:52:00,305 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-09 23:52:31] 2026-03-09 22:52:00,306 | INFO     | did not find any defunct processes belonging to 2601182
[2026-03-09 23:52:31] 2026-03-09 22:52:00,307 | INFO     | did not find any defunct processes belonging to 2601182
[2026-03-09 23:52:31] 2026-03-09 22:52:00,307 | INFO     | ready for new job
[2026-03-09 23:52:31] 2026-03-09 22:52:00,307 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-09 23:52:31] 2026-03-09 22:52:00,308 | INFO     | **************************************
[2026-03-09 23:52:31] 2026-03-09 22:52:00,308 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-09 23:52:31] 2026-03-09 22:52:00,308 | INFO     | **************************************
[2026-03-09 23:52:31] 2026-03-09 22:52:00,308 | INFO     | 
[2026-03-09 23:52:31] 2026-03-09 22:52:00,308 | INFO     | architecture information:
[2026-03-09 23:52:31] 2026-03-09 22:52:00,308 | INFO     | executing command: cat /etc/os-release
[2026-03-09 23:52:31] 2026-03-09 22:52:00,318 | INFO     | cat /etc/os-release:
[2026-03-09 23:52:31] NAME="CentOS Linux"
[2026-03-09 23:52:31] VERSION="7 (Core)"
[2026-03-09 23:52:31] ID="centos"
[2026-03-09 23:52:31] ID_LIKE="rhel fedora"
[2026-03-09 23:52:31] VERSION_ID="7"
[2026-03-09 23:52:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-09 23:52:31] ANSI_COLOR="0;31"
[2026-03-09 23:52:31] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-09 23:52:31] HOME_URL="https://www.centos.org/"
[2026-03-09 23:52:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-09 23:52:31] 
[2026-03-09 23:52:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-09 23:52:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-09 23:52:31] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-09 23:52:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-09 23:52:31] 
[2026-03-09 23:52:31] 2026-03-09 22:52:00,318 | INFO     | **************************************
[2026-03-09 23:52:31] 2026-03-09 22:52:00,821 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-09 23:52:31] 2026-03-09 22:52:00,835 | INFO     | sufficient remaining disk space (372847411200 B)
[2026-03-09 23:52:31] 2026-03-09 22:52:00,835 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-09 23:52:31] 2026-03-09 22:52:00,835 | INFO     | current server update state: UPDATING_FINAL
[2026-03-09 23:52:31] 2026-03-09 22:52:00,835 | INFO     | update_server=False
[2026-03-09 23:52:31] 2026-03-09 22:52:00,835 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-09 23:52:31] 2026-03-09 22:52:00,835 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-09 23:52:31] 2026-03-09 22:52:00,836 | INFO     | aborting loop
[2026-03-09 23:52:31] 2026-03-09 22:52:00,836 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-09 23:52:31] 2026-03-09 22:52:01,003 | INFO     | all data control threads have been joined
[2026-03-09 23:52:31] 2026-03-09 22:52:01,273 | INFO     | all payload control threads have been joined
[2026-03-09 23:52:31] 2026-03-09 22:52:01,417 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-09 23:52:31] 2026-03-09 22:52:01,837 | INFO     | [job] job monitor thread has finished
[2026-03-09 23:52:31] 2026-03-09 22:52:01,837 | INFO     | [job] queue monitor thread has finished
[2026-03-09 23:52:31] 2026-03-09 22:52:01,837 | INFO     | [job] retrieve thread has finished
[2026-03-09 23:52:31] 2026-03-09 22:52:01,908 | INFO     | [payload] validate_pre thread has finished
[2026-03-09 23:52:31] 2026-03-09 22:52:02,009 | INFO     | [data] copytool_in thread has finished
[2026-03-09 23:52:31] 2026-03-09 22:52:02,010 | INFO     | [data] control thread has finished
[2026-03-09 23:52:31] 2026-03-09 22:52:02,203 | INFO     | all job control threads have been joined
[2026-03-09 23:52:31] 2026-03-09 22:52:02,279 | INFO     | [payload] control thread has finished
[2026-03-09 23:52:31] 2026-03-09 22:52:02,427 | INFO     | [payload] failed_post thread has finished
[2026-03-09 23:52:31] 2026-03-09 22:52:02,718 | INFO     | [payload] execute_payloads thread has finished
[2026-03-09 23:52:31] 2026-03-09 22:52:02,809 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-09 23:52:31] 2026-03-09 22:52:03,209 | INFO     | [job] control thread has finished
[2026-03-09 23:52:31] 2026-03-09 22:52:03,248 | INFO     | [job] validate thread has finished
[2026-03-09 23:52:31] 2026-03-09 22:52:03,320 | INFO     | [job] create_data_payload thread has finished
[2026-03-09 23:52:31] 2026-03-09 22:52:03,348 | INFO     | [payload] validate_post thread has finished
[2026-03-09 23:52:31] 2026-03-09 22:52:03,423 | INFO     | [data] copytool_out thread has finished
[2026-03-09 23:52:31] 2026-03-09 22:52:06,817 | INFO     | [data] queue_monitor thread has finished
[2026-03-09 23:52:31] 2026-03-09 22:52:09,806 [wrapper] supervise_pilot (15 min periods counter: 7)
[2026-03-09 23:52:31] 2026-03-09 22:52:11,433 | INFO     | job.realtimelogging is not enabled
[2026-03-09 23:52:31] 2026-03-09 22:52:12,439 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-09 23:52:31] 2026-03-09 22:52:19,420 | INFO     | [monitor] cgroup control has ended
[2026-03-09 23:52:31] 2026-03-09 22:52:19,893 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139667159230272)>', '<ExcThread(monitor, started 139666195986176)>']
[2026-03-09 23:52:31] 2026-03-09 22:52:24,918 | INFO     | all workflow threads have been joined
[2026-03-09 23:52:31] 2026-03-09 22:52:24,918 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-09 23:52:31] 2026-03-09 22:52:24,918 | INFO     | traces error code: 0
[2026-03-09 23:52:31] 2026-03-09 22:52:24,918 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-09 23:52:31] 2026-03-09 22:52:31,737 | INFO     | PID=2596756 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-09 23:52:31] 2026-03-09 22:52:31,737 | INFO     | found 0 job(s) in 20 queues
[2026-03-09 23:52:31] 2026-03-09 22:52:31,737 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-09 23:52:31] 2026-03-09 22:52:31,737 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-09 23:52:31] 2026-03-09 22:52:31,737 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-09 23:52:31] 2026-03-09 22:52:31,737 | INFO     | [monitor] control thread has ended
[2026-03-09 23:52:31] 2026-03-09 22:52:31,787 [wrapper] ==== pilot stdout END ====
[2026-03-09 23:52:31] 2026-03-09 22:52:31,790 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-09 23:52:31] 2026-03-09 22:52:31,792 [wrapper] pilotpid: 2596756
[2026-03-09 23:52:31] 2026-03-09 22:52:31,795 [wrapper] Pilot exit status: 0
[2026-03-09 23:52:31] 2026-03-09 22:52:31,803 [wrapper] pandaids: 7034442311
[2026-03-09 23:52:31] 2026-03-09 22:52:31,820 [wrapper] cleanup supervisor_pilot 2606984 2596757
[2026-03-09 23:52:31] 2026-03-09 22:52:31,823 [wrapper] Test setup, not cleaning
[2026-03-09 23:52:31] 2026-03-09 22:52:31,826 [wrapper] apfmon messages muted
[2026-03-09 23:52:31] 2026-03-09 22:52:31,828 [wrapper] ==== wrapper stdout END ====
[2026-03-09 23:52:31] 2026-03-09 22:52:31,830 [wrapper] ==== wrapper stderr END ====
[2026-03-09 23:52:31]  *** Error codes and diagnostics ***
[2026-03-09 23:52:31]     "exeErrorCode": 0,
[2026-03-09 23:52:31]     "exeErrorDiag": "",
[2026-03-09 23:52:31]     "pilotErrorCode": 0,
[2026-03-09 23:52:31]     "pilotErrorDiag": "",
[2026-03-09 23:52:31]  *** Listing of results directory ***
[2026-03-09 23:52:31] total 462572
[2026-03-09 23:52:31] -rw-r--r-- 1 boinc boinc    584627 Mar  1 06:54 pilot3.tar.gz
[2026-03-09 23:52:31] -rwx------ 1 boinc boinc     36322 Mar  1 06:55 runpilot2-wrapper.sh
[2026-03-09 23:52:31] -rw-r--r-- 1 boinc boinc      5111 Mar  1 06:57 queuedata.json
[2026-03-09 23:52:31] -rw-r--r-- 1 boinc boinc       100 Mar  9 22:22 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-09 23:52:31] -rwxr-xr-x 1 boinc boinc      7986 Mar  9 22:22 run_atlas
[2026-03-09 23:52:31] -rw-r--r-- 1 boinc boinc       105 Mar  9 22:22 job.xml
[2026-03-09 23:52:31] -rw-r--r-- 2 boinc boinc 266715948 Mar  9 22:22 EVNT.48343704._000089.pool.root.1
[2026-03-09 23:52:31] -rw-r--r-- 2 boinc boinc    597974 Mar  9 22:22 input.tar.gz
[2026-03-09 23:52:31] -rw-r--r-- 2 boinc boinc     15845 Mar  9 22:22 start_atlas.sh
[2026-03-09 23:52:31] drwxrwx--x 2 boinc boinc      4096 Mar  9 22:22 shared
[2026-03-09 23:52:31] -rw-r--r-- 1 boinc boinc         0 Mar  9 22:22 boinc_setup_complete
[2026-03-09 23:52:31] -rw-r--r-- 1 boinc boinc      6448 Mar  9 22:22 init_data.xml
[2026-03-09 23:52:31] -rw-r--r-- 1 boinc boinc         0 Mar  9 22:22 boinc_lockfile
[2026-03-09 23:52:31] -rw-r--r-- 1 boinc boinc      2574 Mar  9 22:22 pandaJob.out
[2026-03-09 23:52:31] -rw------- 1 boinc boinc   1002738 Mar  9 22:22 agis_schedconf.cvmfs.json
[2026-03-09 23:52:31] -rw------- 1 boinc boinc   1511578 Mar  9 22:22 agis_ddmendpoints.agis.ALL.json
[2026-03-09 23:52:31] -rw------- 1 boinc boinc       426 Mar  9 22:22 workernode_map.json
[2026-03-09 23:52:31] drwx------ 5 boinc boinc      4096 Mar  9 22:22 pilot3
[2026-03-09 23:52:31] -rw------- 1 boinc boinc 200924415 Mar  9 23:51 HITS.48838536._002267.pool.root.1
[2026-03-09 23:52:31] -rw-r--r-- 1 boinc boinc       529 Mar  9 23:51 boinc_task_state.xml
[2026-03-09 23:52:31] -rw------- 1 boinc boinc        95 Mar  9 23:51 pilot_heartbeat.json
[2026-03-09 23:52:31] -rw------- 1 boinc boinc      1014 Mar  9 23:51 memory_monitor_summary.json
[2026-03-09 23:52:31] -rw------- 1 boinc boinc    270995 Mar  9 23:51 log.48838536._002267.job.log.tgz.1
[2026-03-09 23:52:31] -rw------- 1 boinc boinc      6304 Mar  9 23:51 heartbeat.json
[2026-03-09 23:52:31] -rw-r--r-- 1 boinc boinc      8192 Mar  9 23:52 boinc_mmap_file
[2026-03-09 23:52:31] -rw-r--r-- 1 boinc boinc        27 Mar  9 23:52 wrapper_checkpoint.txt
[2026-03-09 23:52:31] -rw------- 1 boinc boinc       747 Mar  9 23:52 pilotlog.txt
[2026-03-09 23:52:31] -rw------- 1 boinc boinc    784670 Mar  9 23:52 log.48838536._002267.job.log.1
[2026-03-09 23:52:31] -rw------- 1 boinc boinc       357 Mar  9 23:52 output.list
[2026-03-09 23:52:31] -rw-r--r-- 1 boinc boinc       620 Mar  9 23:52 runtime_log
[2026-03-09 23:52:31] -rw------- 1 boinc boinc   1075200 Mar  9 23:52 result.tar.gz
[2026-03-09 23:52:31] -rw-r--r-- 1 boinc boinc      8911 Mar  9 23:52 runtime_log.err
[2026-03-09 23:52:31] -rw------- 1 boinc boinc       660 Mar  9 23:52 mp1MDmhxoG9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmz58KDma6EnMo.diag
[2026-03-09 23:52:31] -rw-r--r-- 1 boinc boinc     12932 Mar  9 23:52 stderr.txt
[2026-03-09 23:52:31] HITS file was successfully produced:
[2026-03-09 23:52:31] -rw------- 1 boinc boinc 200924415 Mar  9 23:51 shared/HITS.pool.root.1
[2026-03-09 23:52:31]  *** Contents of shared directory: ***
[2026-03-09 23:52:31] total 458340
[2026-03-09 23:52:31] -rw-r--r-- 2 boinc boinc 266715948 Mar  9 22:22 ATLAS.root_0
[2026-03-09 23:52:31] -rw-r--r-- 2 boinc boinc    597974 Mar  9 22:22 input.tar.gz
[2026-03-09 23:52:31] -rw-r--r-- 2 boinc boinc     15845 Mar  9 22:22 start_atlas.sh
[2026-03-09 23:52:31] -rw------- 1 boinc boinc 200924415 Mar  9 23:51 HITS.pool.root.1
[2026-03-09 23:52:31] -rw------- 1 boinc boinc   1075200 Mar  9 23:52 result.tar.gz
23:52:33 (2592711): run_atlas exited; CPU time 15466.217848
23:52:33 (2592711): called boinc_finish(0)

</stderr_txt>
]]>

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