Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:38:27 (3613247): wrapper (7.7.26015): starting
15:38:27 (3613247): wrapper: running run_atlas (--nthreads 4)
[2026-03-09 15:38:27] Arguments: --nthreads 4
[2026-03-09 15:38:27] Threads: 4
[2026-03-09 15:38:27] Checking for CVMFS
[2026-03-09 15:38:27] No cvmfs_config command found, will try listing directly
[2026-03-09 15:38:27] CVMFS is ok
[2026-03-09 15:38:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-09 15:38:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-09 15:38:27] Further information can be found at the LHC@home message board.
[2026-03-09 15:38:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-09 15:38:27] Checking for apptainer binary...
[2026-03-09 15:38:27] which: no apptainer in ((null))
[2026-03-09 15:38:27] apptainer is not installed, using version from CVMFS
[2026-03-09 15:38:27] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-09 15:38:27] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot12/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut21.grid.cesnet.cz
[2026-03-09 15:38:27] apptainer works
[2026-03-09 15:38:27] Set ATHENA_PROC_NUMBER=4
[2026-03-09 15:38:27] Set ATHENA_CORE_NUMBER=4
[2026-03-09 15:38:27] Starting ATLAS job with PandaID=7047136415
[2026-03-09 15:38:27] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot12/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
16:27:42 (48136): wrapper (7.7.26015): starting
16:27:42 (48136): wrapper: running run_atlas (--nthreads 4)
[2026-03-09 16:27:42] Arguments: --nthreads 4
[2026-03-09 16:27:42] Threads: 4
[2026-03-09 16:27:42] This job has been restarted, cleaning up previous attempt
[2026-03-09 16:27:42] Checking for CVMFS
[2026-03-09 16:27:42] No cvmfs_config command found, will try listing directly
[2026-03-09 16:27:42] CVMFS is ok
[2026-03-09 16:27:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-09 16:27:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-09 16:27:42] Further information can be found at the LHC@home message board.
[2026-03-09 16:27:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-09 16:27:42] Checking for apptainer binary...
[2026-03-09 16:27:42] which: no apptainer in ((null))
[2026-03-09 16:27:42] apptainer is not installed, using version from CVMFS
[2026-03-09 16:27:42] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-09 16:27:42] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot12/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut21.grid.cesnet.cz
[2026-03-09 16:27:42] apptainer works
[2026-03-09 16:27:42] Set ATHENA_PROC_NUMBER=4
[2026-03-09 16:27:42] Set ATHENA_CORE_NUMBER=4
[2026-03-09 16:27:42] Starting ATLAS job with PandaID=7047136415
[2026-03-09 16:27:42] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot12/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-09 18:15:20]  *** The last 200 lines of the pilot log: ***
[2026-03-09 18:15:20] 2026-03-09 17:14:46,630 | INFO     | extracted standard memory fields from prmon json
[2026-03-09 18:15:20] 2026-03-09 17:14:46,630 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-09 18:15:20] 2026-03-09 17:14:46,630 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-09 18:15:20] 2026-03-09 17:14:46,631 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-09 18:15:20] 2026-03-09 17:14:46,632 | INFO     | fitting pss+swap vs Time
[2026-03-09 18:15:20] 2026-03-09 17:14:46,632 | INFO     | sum of square deviations: 358927660.0
[2026-03-09 18:15:20] 2026-03-09 17:14:46,632 | INFO     | sum of deviations: 10594782132.999998
[2026-03-09 18:15:20] 2026-03-09 17:14:46,633 | INFO     | mean x: 1773073263.0
[2026-03-09 18:15:20] 2026-03-09 17:14:46,633 | INFO     | mean y: 2316521.619047619
[2026-03-09 18:15:20] 2026-03-09 17:14:46,633 | INFO     | intersect: -52335040056.95282
[2026-03-09 18:15:20] 2026-03-09 17:14:46,633 | INFO     | chi2: 1.1182951926657771
[2026-03-09 18:15:20] 2026-03-09 17:14:46,633 | INFO     | sum of square deviations: 310052325.0
[2026-03-09 18:15:20] 2026-03-09 17:14:46,633 | INFO     | sum of deviations: 10090576812.0
[2026-03-09 18:15:20] 2026-03-09 17:14:46,633 | INFO     | mean x: 1773073110.5
[2026-03-09 18:15:20] 2026-03-09 17:14:46,633 | INFO     | mean y: 2314947.5
[2026-03-09 18:15:20] 2026-03-09 17:14:46,633 | INFO     | intersect: -57701914217.01929
[2026-03-09 18:15:20] 2026-03-09 17:14:46,633 | INFO     | chi2: 1.1199897600550257
[2026-03-09 18:15:20] 2026-03-09 17:14:46,633 | INFO     | current chi2=1.1199897600550257 (change=-0.15153131305242143 %)
[2026-03-09 18:15:20] 2026-03-09 17:14:46,633 | INFO     | right removable region: 99
[2026-03-09 18:15:20] 2026-03-09 17:14:46,633 | INFO     | sum of square deviations: 310052325.0
[2026-03-09 18:15:20] 2026-03-09 17:14:46,634 | INFO     | sum of deviations: 259161580.5
[2026-03-09 18:15:20] 2026-03-09 17:14:46,634 | INFO     | mean x: 1773073415.5
[2026-03-09 18:15:20] 2026-03-09 17:14:46,634 | INFO     | mean y: 2347808.49
[2026-03-09 18:15:20] 2026-03-09 17:14:46,634 | INFO     | intersect: -1479700451.2787766
[2026-03-09 18:15:20] 2026-03-09 17:14:46,637 | INFO     | chi2: 0.0007263451794438797
[2026-03-09 18:15:20] 2026-03-09 17:14:46,637 | INFO     | current chi2=0.0007263451794438797 (change=99.93504888653662 %)
[2026-03-09 18:15:20] 2026-03-09 17:14:46,637 | INFO     | sum of square deviations: 265828240.0
[2026-03-09 18:15:20] 2026-03-09 17:14:46,637 | INFO     | sum of deviations: -73216042.99999999
[2026-03-09 18:15:20] 2026-03-09 17:14:46,637 | INFO     | mean x: 1773073568.0
[2026-03-09 18:15:20] 2026-03-09 17:14:46,637 | INFO     | mean y: 2348939.442105263
[2026-03-09 18:15:20] 2026-03-09 17:14:46,637 | INFO     | intersect: 490699727.8942704
[2026-03-09 18:15:20] 2026-03-09 17:14:46,637 | INFO     | chi2: 0.00020462948169878487
[2026-03-09 18:15:20] 2026-03-09 17:14:46,637 | INFO     | current chi2=0.00020462948169878487 (change=71.82751569226939 %)
[2026-03-09 18:15:20] 2026-03-09 17:14:46,637 | INFO     | sum of square deviations: 226022842.5
[2026-03-09 18:15:20] 2026-03-09 17:14:46,638 | INFO     | sum of deviations: -159327638.5
[2026-03-09 18:15:20] 2026-03-09 17:14:46,638 | INFO     | mean x: 1773073720.5
[2026-03-09 18:15:20] 2026-03-09 17:14:46,638 | INFO     | mean y: 2349269.966666667
[2026-03-09 18:15:20] 2026-03-09 17:14:46,638 | INFO     | intersect: 1252221387.5322797
[2026-03-09 18:15:20] 2026-03-09 17:14:46,638 | INFO     | chi2: 0.00015391358176917219
[2026-03-09 18:15:20] 2026-03-09 17:14:46,638 | INFO     | current chi2=0.00015391358176917219 (change=24.78425860661985 %)
[2026-03-09 18:15:20] 2026-03-09 17:14:46,638 | INFO     | left removable region: 30
[2026-03-09 18:15:20] 2026-03-09 17:14:46,638 | INFO     | sum of square deviations: 101843770.0
[2026-03-09 18:15:20] 2026-03-09 17:14:46,638 | INFO     | sum of deviations: -162758614.00000003
[2026-03-09 18:15:20] 2026-03-09 17:14:46,638 | INFO     | mean x: 1773073995.0
[2026-03-09 18:15:20] 2026-03-09 17:14:46,638 | INFO     | mean y: 2349457.1739130435
[2026-03-09 18:15:20] 2026-03-09 17:14:46,638 | INFO     | intersect: 2835935310.7380824
[2026-03-09 18:15:20] 2026-03-09 17:14:46,638 | INFO     | chi2: 0.0001006056211578839
[2026-03-09 18:15:20] 2026-03-09 17:14:46,638 | INFO     | current memory leak: -1.60 B/s (using 69 data points, chi2=0.00)
[2026-03-09 18:15:20] 2026-03-09 17:14:46,639 | INFO     | could have reported an average CPU frequency of 3549 MHz (7 samples)
[2026-03-09 18:15:20] 2026-03-09 17:14:46,639 | INFO     | ..............................
[2026-03-09 18:15:20] 2026-03-09 17:14:46,639 | INFO     | . Timing measurements:
[2026-03-09 18:15:20] 2026-03-09 17:14:46,639 | INFO     | . get job = 0 s
[2026-03-09 18:15:20] 2026-03-09 17:14:46,639 | INFO     | . initial setup = 0 s
[2026-03-09 18:15:20] 2026-03-09 17:14:46,639 | INFO     | . payload setup = 4 s
[2026-03-09 18:15:20] 2026-03-09 17:14:46,639 | INFO     | . stage-in = 0 s
[2026-03-09 18:15:20] 2026-03-09 17:14:46,639 | INFO     | . payload execution = 6393 s
[2026-03-09 18:15:20] 2026-03-09 17:14:46,639 | INFO     | . stage-out = 0 s
[2026-03-09 18:15:20] 2026-03-09 17:14:46,639 | INFO     | . log creation = 0 s
[2026-03-09 18:15:20] 2026-03-09 17:14:46,639 | INFO     | ..............................
[2026-03-09 18:15:20] 2026-03-09 17:14:46,691 | INFO     | 
[2026-03-09 18:15:20] 2026-03-09 17:14:46,691 | INFO     | job summary report
[2026-03-09 18:15:20] 2026-03-09 17:14:46,691 | INFO     | --------------------------------------------------
[2026-03-09 18:15:20] 2026-03-09 17:14:46,691 | INFO     | PanDA job id: 7047136415
[2026-03-09 18:15:20] 2026-03-09 17:14:46,691 | INFO     | task id: 48787773
[2026-03-09 18:15:20] 2026-03-09 17:14:46,691 | INFO     | errors: (none)
[2026-03-09 18:15:20] 2026-03-09 17:14:46,691 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-09 18:15:20] 2026-03-09 17:14:46,691 | INFO     | pilot state: finished 
[2026-03-09 18:15:20] 2026-03-09 17:14:46,691 | INFO     | transexitcode: 0
[2026-03-09 18:15:20] 2026-03-09 17:14:46,692 | INFO     | exeerrorcode: 0
[2026-03-09 18:15:20] 2026-03-09 17:14:46,692 | INFO     | exeerrordiag: 
[2026-03-09 18:15:20] 2026-03-09 17:14:46,692 | INFO     | exitcode: 0
[2026-03-09 18:15:20] 2026-03-09 17:14:46,692 | INFO     | exitmsg: OK
[2026-03-09 18:15:20] 2026-03-09 17:14:46,692 | INFO     | cpuconsumptiontime: 24519 s
[2026-03-09 18:15:20] 2026-03-09 17:14:46,692 | INFO     | nevents: 400
[2026-03-09 18:15:20] 2026-03-09 17:14:46,692 | INFO     | neventsw: 0
[2026-03-09 18:15:20] 2026-03-09 17:14:46,692 | INFO     | pid: 66070
[2026-03-09 18:15:20] 2026-03-09 17:14:46,692 | INFO     | pgrp: 66070
[2026-03-09 18:15:20] 2026-03-09 17:14:46,692 | INFO     | corecount: 4
[2026-03-09 18:15:20] 2026-03-09 17:14:46,692 | INFO     | event service: False
[2026-03-09 18:15:20] 2026-03-09 17:14:46,692 | INFO     | sizes: {0: 2279766, 1: 2280227, 11: 2280227, 6401: 2307347, 6402: 2307346, 6403: 2316422, 6405: 2316800}
[2026-03-09 18:15:20] 2026-03-09 17:14:46,692 | INFO     | --------------------------------------------------
[2026-03-09 18:15:20] 2026-03-09 17:14:46,692 | INFO     | 
[2026-03-09 18:15:20] 2026-03-09 17:14:46,692 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot12/slots/1
[2026-03-09 18:15:20] 2026-03-09 17:14:46,789 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-09 18:15:20] 2026-03-09 17:14:46,789 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-09 18:15:20] 2026-03-09 17:14:46,789 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-09 18:15:20] 2026-03-09 17:14:46,789 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-09 18:15:20] 2026-03-09 17:14:46,789 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-09 18:15:20] 2026-03-09 17:14:46,789 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-09 18:15:20] 2026-03-09 17:14:46,789 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-09 18:15:20] 2026-03-09 17:14:46,789 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-09 18:15:20] 2026-03-09 17:14:46,789 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-09 18:15:20] 2026-03-09 17:14:46,789 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-09 18:15:20] 2026-03-09 17:14:46,789 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-09 18:15:20] 2026-03-09 17:14:46,789 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-09 18:15:20] 2026-03-09 17:14:46,789 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-09 18:15:20] 2026-03-09 17:14:46,789 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-09 18:15:20] 2026-03-09 17:14:46,789 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-09 18:15:20] 2026-03-09 17:14:46,789 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-09 18:15:20] 2026-03-09 17:14:46,790 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-09 18:15:20] 2026-03-09 17:14:46,790 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-09 18:15:20] 2026-03-09 17:14:46,790 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-09 18:15:20] 2026-03-09 17:14:46,790 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-09 18:15:20] 2026-03-09 17:14:46,790 | INFO     | job 7047136415 has completed (purged errors)
[2026-03-09 18:15:20] 2026-03-09 17:14:46,790 | INFO     | overall cleanup function is called
[2026-03-09 18:15:20] 2026-03-09 17:14:47,796 | INFO     | --- collectZombieJob: --- 10, [66070]
[2026-03-09 18:15:20] 2026-03-09 17:14:47,797 | INFO     | zombie collector waiting for pid 66070
[2026-03-09 18:15:20] 2026-03-09 17:14:47,797 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-09 18:15:20] 2026-03-09 17:14:47,797 | INFO     | collected zombie processes
[2026-03-09 18:15:20] 2026-03-09 17:14:47,797 | INFO     | will attempt to kill all subprocesses of pid=66070
[2026-03-09 18:15:20] 2026-03-09 17:14:48,710 | INFO     | process IDs to be killed: [66070] (in reverse order)
[2026-03-09 18:15:20] 2026-03-09 17:14:48,837 | WARNING  | process 66070 can no longer be monitored (due to stat problems) - aborting
[2026-03-09 18:15:20] 2026-03-09 17:14:49,166 | WARNING  | found no corresponding commands to process id(s)
[2026-03-09 18:15:20] 2026-03-09 17:14:49,167 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-09 18:15:20] 2026-03-09 17:14:49,229 | INFO     | did not find any defunct processes belonging to 66070
[2026-03-09 18:15:20] 2026-03-09 17:14:49,272 | INFO     | using path: /var/lib/boinc/var/slot12/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 18:15:20] 2026-03-09 17:14:49,277 | INFO     | did not find any defunct processes belonging to 66070
[2026-03-09 18:15:20] 2026-03-09 17:14:49,278 | INFO     | ready for new job
[2026-03-09 18:15:20] 2026-03-09 17:14:49,278 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-09 18:15:20] 2026-03-09 17:14:49,279 | INFO     | **************************************
[2026-03-09 18:15:20] 2026-03-09 17:14:49,279 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-09 18:15:20] 2026-03-09 17:14:49,279 | INFO     | **************************************
[2026-03-09 18:15:20] 2026-03-09 17:14:49,279 | INFO     | 
[2026-03-09 18:15:20] 2026-03-09 17:14:49,296 | INFO     | architecture information:
[2026-03-09 18:15:20] 2026-03-09 17:14:49,302 | INFO     | executing command: cat /etc/os-release
[2026-03-09 18:15:20] 2026-03-09 17:14:49,327 | INFO     | cat /etc/os-release:
[2026-03-09 18:15:20] NAME="CentOS Linux"
[2026-03-09 18:15:20] VERSION="7 (Core)"
[2026-03-09 18:15:20] ID="centos"
[2026-03-09 18:15:20] ID_LIKE="rhel fedora"
[2026-03-09 18:15:20] VERSION_ID="7"
[2026-03-09 18:15:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-09 18:15:20] ANSI_COLOR="0;31"
[2026-03-09 18:15:20] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-09 18:15:20] HOME_URL="https://www.centos.org/"
[2026-03-09 18:15:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-09 18:15:20] 
[2026-03-09 18:15:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-09 18:15:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-09 18:15:20] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-09 18:15:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-09 18:15:20] 
[2026-03-09 18:15:20] 2026-03-09 17:14:49,327 | INFO     | **************************************
[2026-03-09 18:15:20] 2026-03-09 17:14:49,788 | INFO     | number of running child processes to parent process 66070: 1
[2026-03-09 18:15:20] 2026-03-09 17:14:49,788 | INFO     | maximum number of monitored processes: 6
[2026-03-09 18:15:20] 2026-03-09 17:14:49,789 | INFO     | aborting job monitoring since job object (job id=7047136415) has expired
[2026-03-09 18:15:20] 2026-03-09 17:14:49,830 | INFO     | executing command: df -mP /var/lib/boinc/var/slot12/slots/1
[2026-03-09 18:15:20] 2026-03-09 17:14:49,847 | INFO     | sufficient remaining disk space (20971520000 B)
[2026-03-09 18:15:20] 2026-03-09 17:14:49,847 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-09 18:15:20] 2026-03-09 17:14:49,847 | INFO     | current server update state: UPDATING_FINAL
[2026-03-09 18:15:20] 2026-03-09 17:14:49,847 | INFO     | update_server=False
[2026-03-09 18:15:20] 2026-03-09 17:14:49,847 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-09 18:15:20] 2026-03-09 17:14:49,847 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-09 18:15:20] 2026-03-09 17:14:49,848 | INFO     | will abort loop
[2026-03-09 18:15:20] 2026-03-09 17:14:49,927 | INFO     | all payload control threads have been joined
[2026-03-09 18:15:20] 2026-03-09 17:14:50,218 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-09 18:15:20] 2026-03-09 17:14:50,824 | INFO     | all data control threads have been joined
[2026-03-09 18:15:20] 2026-03-09 17:14:50,853 | INFO     | [job] retrieve thread has finished
[2026-03-09 18:15:20] 2026-03-09 17:14:50,854 | INFO     | [job] job monitor thread has finished
[2026-03-09 18:15:20] 2026-03-09 17:14:50,933 | INFO     | [payload] control thread has finished
[2026-03-09 18:15:20] 2026-03-09 17:14:51,222 | INFO     | [payload] execute_payloads thread has finished
[2026-03-09 18:15:20] 2026-03-09 17:14:51,449 | INFO     | all job control threads have been joined
[2026-03-09 18:15:20] 2026-03-09 17:14:51,577 | INFO     | [payload] failed_post thread has finished
[2026-03-09 18:15:20] 2026-03-09 17:14:51,707 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-09 18:15:20] 2026-03-09 17:14:51,757 | INFO     | [job] validate thread has finished
[2026-03-09 18:15:20] 2026-03-09 17:14:51,831 | INFO     | [data] control thread has finished
[2026-03-09 18:15:20] 2026-03-09 17:14:51,864 | INFO     | [job] create_data_payload thread has finished
[2026-03-09 18:15:20] 2026-03-09 17:14:51,866 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-09 18:15:20] 2026-03-09 17:14:51,988 | INFO     | [payload] validate_pre thread has finished
[2026-03-09 18:15:20] 2026-03-09 17:14:52,018 | INFO     | [data] copytool_in thread has finished
[2026-03-09 18:15:20] 2026-03-09 17:14:52,063 | INFO     | [payload] validate_post thread has finished
[2026-03-09 18:15:20] 2026-03-09 17:14:52,223 | INFO     | [data] copytool_out thread has finished
[2026-03-09 18:15:20] 2026-03-09 17:14:52,455 | INFO     | [job] control thread has finished
[2026-03-09 18:15:20] 2026-03-09 17:14:52,713 | INFO     | [job] queue monitor thread has finished
[2026-03-09 18:15:20] 2026-03-09 17:14:55,871 | INFO     | [data] queue_monitor thread has finished
[2026-03-09 18:15:20] 2026-03-09 17:15:00,090 | INFO     | job.realtimelogging is not enabled
[2026-03-09 18:15:20] 2026-03-09 17:15:00,793 | INFO     | [monitor] cgroup control has ended
[2026-03-09 18:15:20] 2026-03-09 17:15:01,096 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-09 18:15:20] 2026-03-09 17:15:03,131 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22360112219968)>', '<ExcThread(monitor, started 22359879993088)>']
[2026-03-09 18:15:20] 2026-03-09 17:15:08,155 | INFO     | all workflow threads have been joined
[2026-03-09 18:15:20] 2026-03-09 17:15:08,156 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-09 18:15:20] 2026-03-09 17:15:08,156 | INFO     | traces error code: 0
[2026-03-09 18:15:20] 2026-03-09 17:15:08,156 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-09 18:15:20] 2026-03-09 17:15:19,692 | INFO     | PID=54960 has CPU usage=7.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-09 18:15:20] 2026-03-09 17:15:19,693 | INFO     | .. there are 61 such processes running
[2026-03-09 18:15:20] 2026-03-09 17:15:19,693 | INFO     | found 0 job(s) in 20 queues
[2026-03-09 18:15:20] 2026-03-09 17:15:19,693 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-09 18:15:20] 2026-03-09 17:15:19,693 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-09 18:15:20] 2026-03-09 17:15:19,693 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-09 18:15:20] 2026-03-09 17:15:19,693 | INFO     | [monitor] control thread has ended
[2026-03-09 18:15:20] 2026-03-09 17:15:19,862 [wrapper] ==== pilot stdout END ====
[2026-03-09 18:15:20] 2026-03-09 17:15:19,868 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-09 18:15:20] 2026-03-09 17:15:19,871 [wrapper] pilotpid: 54960
[2026-03-09 18:15:20] 2026-03-09 17:15:19,878 [wrapper] Pilot exit status: 0
[2026-03-09 18:15:20] 2026-03-09 17:15:19,922 [wrapper] pandaids: 7047136415 7047136415
[2026-03-09 18:15:20] 2026-03-09 17:15:20,032 [wrapper] cleanup supervisor_pilot 1236569 54961
[2026-03-09 18:15:20] 2026-03-09 17:15:20,037 [wrapper] Test setup, not cleaning
[2026-03-09 18:15:20] 2026-03-09 17:15:20,045 [wrapper] apfmon messages muted
[2026-03-09 18:15:20] 2026-03-09 17:15:20,053 [wrapper] ==== wrapper stdout END ====
[2026-03-09 18:15:20] 2026-03-09 17:15:20,067 [wrapper] ==== wrapper stderr END ====
[2026-03-09 18:15:20]  *** Error codes and diagnostics ***
[2026-03-09 18:15:20]     "exeErrorCode": 0,
[2026-03-09 18:15:20]     "exeErrorDiag": "",
[2026-03-09 18:15:20]     "pilotErrorCode": 0,
[2026-03-09 18:15:20]     "pilotErrorDiag": "",
[2026-03-09 18:15:20]  *** Listing of results directory ***
[2026-03-09 18:15:20] total 783580
[2026-03-09 18:15:20] drwx------. 5 boinc boinc      4096 Feb  2 16:00 pilot3
[2026-03-09 18:15:20] -rw-r--r--. 1 boinc boinc    584627 Mar  9 10:23 pilot3.tar.gz
[2026-03-09 18:15:20] -rwx------. 1 boinc boinc     36322 Mar  9 10:26 runpilot2-wrapper.sh
[2026-03-09 18:15:20] -rw-r--r--. 1 boinc boinc      5111 Mar  9 10:27 queuedata.json
[2026-03-09 18:15:20] -rw-r--r--. 1 boinc boinc       100 Mar  9 15:38 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-09 18:15:20] -rwxr-xr-x. 1 boinc boinc      7986 Mar  9 15:38 run_atlas
[2026-03-09 18:15:20] -rw-r--r--. 1 boinc boinc       105 Mar  9 15:38 job.xml
[2026-03-09 18:15:20] -rw-r--r--. 3 boinc boinc 298561315 Mar  9 15:38 EVNT.48787770._000004.pool.root.1
[2026-03-09 18:15:20] -rw-r--r--. 3 boinc boinc 298561315 Mar  9 15:38 ATLAS.root_0
[2026-03-09 18:15:20] -rw-r--r--. 2 boinc boinc     15845 Mar  9 15:38 start_atlas.sh
[2026-03-09 18:15:20] drwxrwx--x. 2 boinc boinc      4096 Mar  9 15:38 shared
[2026-03-09 18:15:20] -rw-r--r--. 2 boinc boinc    597943 Mar  9 15:38 input.tar.gz
[2026-03-09 18:15:20] -rw-r--r--. 1 boinc boinc         0 Mar  9 15:38 boinc_lockfile
[2026-03-09 18:15:20] -rw-------. 1 boinc boinc   1511578 Mar  9 15:38 agis_ddmendpoints.agis.ALL.json
[2026-03-09 18:15:20] -rw-r--r--. 1 boinc boinc      2533 Mar  9 16:27 pandaJob.out
[2026-03-09 18:15:20] -rw-------. 1 boinc boinc   1002554 Mar  9 16:27 agis_schedconf.cvmfs.json
[2026-03-09 18:15:20] -rw-------. 1 boinc boinc       443 Mar  9 16:27 workernode_map.json
[2026-03-09 18:15:20] -rw-r--r--. 1 boinc boinc      6706 Mar  9 16:38 init_data.xml
[2026-03-09 18:15:20] -rw-------. 1 boinc boinc 198888165 Mar  9 18:14 HITS.48787773._000091.pool.root.1
[2026-03-09 18:15:20] -rw-r--r--. 1 boinc boinc       530 Mar  9 18:14 boinc_task_state.xml
[2026-03-09 18:15:20] -rw-------. 1 boinc boinc      1043 Mar  9 18:14 memory_monitor_summary.json
[2026-03-09 18:15:20] -rw-------. 1 boinc boinc    297028 Mar  9 18:14 log.48787773._000091.job.log.tgz.1
[2026-03-09 18:15:20] -rw-------. 1 boinc boinc      6369 Mar  9 18:14 heartbeat.json
[2026-03-09 18:15:20] -rw-r--r--. 1 boinc boinc      8192 Mar  9 18:14 boinc_mmap_file
[2026-03-09 18:15:20] -rw-r--r--. 1 boinc boinc        27 Mar  9 18:14 wrapper_checkpoint.txt
[2026-03-09 18:15:20] -rw-------. 1 boinc boinc        97 Mar  9 18:15 pilot_heartbeat.json
[2026-03-09 18:15:20] -rw-------. 1 boinc boinc       821 Mar  9 18:15 pilotlog.txt
[2026-03-09 18:15:20] -rw-------. 1 boinc boinc    922977 Mar  9 18:15 log.48787773._000091.job.log.1
[2026-03-09 18:15:20] -rw-------. 1 boinc boinc       357 Mar  9 18:15 output.list
[2026-03-09 18:15:20] -rw-r--r--. 1 boinc boinc       620 Mar  9 18:15 runtime_log
[2026-03-09 18:15:20] -rw-------. 1 boinc boinc   1239040 Mar  9 18:15 result.tar.gz
[2026-03-09 18:15:20] -rw-r--r--. 1 boinc boinc      9281 Mar  9 18:15 runtime_log.err
[2026-03-09 18:15:20] -rw-------. 1 boinc boinc       792 Mar  9 18:15 lPLNDm33lJ9n9Rq4apOajLDm4fhM0noT9bVooX4SDmQSZLDmb89UAn.diag
[2026-03-09 18:15:20] -rw-r--r--. 1 boinc boinc     22741 Mar  9 18:15 stderr.txt
[2026-03-09 18:15:20] HITS file was successfully produced:
[2026-03-09 18:15:20] -rw-------. 1 boinc boinc 198888165 Mar  9 18:14 shared/HITS.pool.root.1
[2026-03-09 18:15:20]  *** Contents of shared directory: ***
[2026-03-09 18:15:20] total 487612
[2026-03-09 18:15:20] -rw-r--r--. 3 boinc boinc 298561315 Mar  9 15:38 ATLAS.root_0
[2026-03-09 18:15:20] -rw-r--r--. 2 boinc boinc     15845 Mar  9 15:38 start_atlas.sh
[2026-03-09 18:15:20] -rw-r--r--. 2 boinc boinc    597943 Mar  9 15:38 input.tar.gz
[2026-03-09 18:15:20] -rw-------. 1 boinc boinc 198888165 Mar  9 18:14 HITS.pool.root.1
[2026-03-09 18:15:20] -rw-------. 1 boinc boinc   1239040 Mar  9 18:15 result.tar.gz
18:15:21 (48136): run_atlas exited; CPU time 24769.302580
18:15:21 (48136): called boinc_finish(0)

</stderr_txt>
]]>

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