Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:49:44 (1468216): wrapper (7.7.26015): starting
00:49:44 (1468216): wrapper: running run_atlas (--nthreads 4)
[2026-03-10 00:49:44] Arguments: --nthreads 4
[2026-03-10 00:49:44] Threads: 4
[2026-03-10 00:49:44] Checking for CVMFS
[2026-03-10 00:49:44] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-10 00:49:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-10 00:49:44] Running cvmfs_config stat atlas.cern.ch
[2026-03-10 00:49:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-10 00:49:44] 2.9.2.0 3039 8108 101352 157095 1 50 29539110 36864000 0 130560 0 4105287 99.986 300381 11369 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-10 00:49:44] CVMFS is ok
[2026-03-10 00:49:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-10 00:49:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-10 00:49:44] Further information can be found at the LHC@home message board.
[2026-03-10 00:49:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-10 00:49:44] Checking for apptainer binary...
[2026-03-10 00:49:44] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-10 00:49:44] Running /usr/bin/apptainer --version
[2026-03-10 00:49:44] apptainer version 1.4.1-1.1
[2026-03-10 00:49:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-10 00:49:45] thA334
[2026-03-10 00:49:45] apptainer works
[2026-03-10 00:49:45] Set ATHENA_PROC_NUMBER=4
[2026-03-10 00:49:45] Set ATHENA_CORE_NUMBER=4
[2026-03-10 00:49:45] Starting ATLAS job with PandaID=7040758925
[2026-03-10 00:49:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-10 01:59:06]  *** The last 200 lines of the pilot log: ***
[2026-03-10 01:59:06] 2026-03-10 00:58:28,798 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-10 01:59:06] 2026-03-10 00:58:28,798 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-10 01:59:06] 2026-03-10 00:58:28,798 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-10 01:59:06] 2026-03-10 00:58:28,798 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-10 01:59:06] 2026-03-10 00:58:28,798 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-10 01:59:06] 2026-03-10 00:58:28,798 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-10 01:59:06] 2026-03-10 00:58:28,798 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-10 01:59:06] 2026-03-10 00:58:28,798 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-10 01:59:06] 2026-03-10 00:58:28,798 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-10 01:59:06] 2026-03-10 00:58:28,798 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-10 01:59:06] 2026-03-10 00:58:28,798 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-10 01:59:06] 2026-03-10 00:58:28,798 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-10 01:59:06] 2026-03-10 00:58:28,798 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-10 01:59:06] 2026-03-10 00:58:28,798 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-10 01:59:06] 2026-03-10 00:58:28,798 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-10 01:59:06] 2026-03-10 00:58:28,798 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-10 01:59:06] 2026-03-10 00:58:28,798 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-10 01:59:06] 2026-03-10 00:58:28,798 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-10 01:59:06] 2026-03-10 00:58:28,798 | INFO     | job 7040758925 has completed (purged errors)
[2026-03-10 01:59:06] 2026-03-10 00:58:28,798 | INFO     | overall cleanup function is called
[2026-03-10 01:59:06] 2026-03-10 00:58:29,484 | INFO     | PID=1472333 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-10 01:59:06] 2026-03-10 00:58:29,805 | INFO     | --- collectZombieJob: --- 10, [1476839]
[2026-03-10 01:59:06] 2026-03-10 00:58:29,806 | INFO     | zombie collector waiting for pid 1476839
[2026-03-10 01:59:06] 2026-03-10 00:58:29,806 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-10 01:59:06] 2026-03-10 00:58:29,806 | INFO     | collected zombie processes
[2026-03-10 01:59:06] 2026-03-10 00:58:29,806 | INFO     | will attempt to kill all subprocesses of pid=1476839
[2026-03-10 01:59:06] 2026-03-10 00:58:29,847 | INFO     | process IDs to be killed: [1476839] (in reverse order)
[2026-03-10 01:59:06] 2026-03-10 00:58:29,878 | WARNING  | found no corresponding commands to process id(s)
[2026-03-10 01:59:06] 2026-03-10 00:58:29,879 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-10 01:59:06] 2026-03-10 00:58:29,880 | INFO     | did not find any defunct processes belonging to 1476839
[2026-03-10 01:59:06] 2026-03-10 00:58:29,881 | INFO     | did not find any defunct processes belonging to 1476839
[2026-03-10 01:59:06] 2026-03-10 00:58:29,881 | INFO     | ready for new job
[2026-03-10 01:59:06] 2026-03-10 00:58:29,881 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-10 01:59:06] 2026-03-10 00:58:29,882 | INFO     | **************************************
[2026-03-10 01:59:06] 2026-03-10 00:58:29,882 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-10 01:59:06] 2026-03-10 00:58:29,882 | INFO     | **************************************
[2026-03-10 01:59:06] 2026-03-10 00:58:29,882 | INFO     | 
[2026-03-10 01:59:06] 2026-03-10 00:58:29,882 | INFO     | architecture information:
[2026-03-10 01:59:06] 2026-03-10 00:58:29,883 | INFO     | executing command: cat /etc/os-release
[2026-03-10 01:59:06] 2026-03-10 00:58:29,896 | INFO     | cat /etc/os-release:
[2026-03-10 01:59:06] NAME="CentOS Linux"
[2026-03-10 01:59:06] VERSION="7 (Core)"
[2026-03-10 01:59:06] ID="centos"
[2026-03-10 01:59:06] ID_LIKE="rhel fedora"
[2026-03-10 01:59:06] VERSION_ID="7"
[2026-03-10 01:59:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-10 01:59:06] ANSI_COLOR="0;31"
[2026-03-10 01:59:06] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-10 01:59:06] HOME_URL="https://www.centos.org/"
[2026-03-10 01:59:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-10 01:59:06] 
[2026-03-10 01:59:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-10 01:59:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-10 01:59:06] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-10 01:59:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-10 01:59:06] 
[2026-03-10 01:59:06] 2026-03-10 00:58:29,896 | INFO     | **************************************
[2026-03-10 01:59:06] 2026-03-10 00:58:30,400 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-10 01:59:06] 2026-03-10 00:58:30,418 | INFO     | sufficient remaining disk space (227765387264 B)
[2026-03-10 01:59:06] 2026-03-10 00:58:30,418 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-10 01:59:06] 2026-03-10 00:58:30,419 | INFO     | current server update state: UPDATING_FINAL
[2026-03-10 01:59:06] 2026-03-10 00:58:30,419 | INFO     | update_server=False
[2026-03-10 01:59:06] 2026-03-10 00:58:30,419 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-10 01:59:06] 2026-03-10 00:58:30,419 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-10 01:59:06] 2026-03-10 00:58:30,419 | INFO     | aborting loop
[2026-03-10 01:59:06] 2026-03-10 00:58:30,419 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-10 01:59:06] 2026-03-10 00:58:30,419 | INFO     | found 0 job(s) in 20 queues
[2026-03-10 01:59:06] 2026-03-10 00:58:30,419 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-10 01:59:06] 2026-03-10 00:58:30,419 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-10 01:59:06] 2026-03-10 00:58:30,419 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-10 01:59:06] 2026-03-10 00:58:30,908 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-10 01:59:06] 2026-03-10 00:58:31,025 | INFO     | all job control threads have been joined
[2026-03-10 01:59:06] 2026-03-10 00:58:31,329 | INFO     | all payload control threads have been joined
[2026-03-10 01:59:06] 2026-03-10 00:58:31,424 | INFO     | [job] retrieve thread has finished
[2026-03-10 01:59:06] 2026-03-10 00:58:31,425 | INFO     | [job] job monitor thread has finished
[2026-03-10 01:59:06] 2026-03-10 00:58:31,425 | INFO     | [job] queue monitor thread has finished
[2026-03-10 01:59:06] 2026-03-10 00:58:31,425 | INFO     | all data control threads have been joined
[2026-03-10 01:59:06] 2026-03-10 00:58:31,756 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-10 01:59:06] 2026-03-10 00:58:31,847 | INFO     | [payload] execute_payloads thread has finished
[2026-03-10 01:59:06] 2026-03-10 00:58:32,031 | INFO     | [job] control thread has finished
[2026-03-10 01:59:06] 2026-03-10 00:58:32,335 | INFO     | [payload] control thread has finished
[2026-03-10 01:59:06] 2026-03-10 00:58:32,379 | INFO     | [job] validate thread has finished
[2026-03-10 01:59:06] 2026-03-10 00:58:32,421 | INFO     | [job] create_data_payload thread has finished
[2026-03-10 01:59:06] 2026-03-10 00:58:32,431 | INFO     | [data] control thread has finished
[2026-03-10 01:59:06] 2026-03-10 00:58:32,488 | INFO     | [payload] validate_post thread has finished
[2026-03-10 01:59:06] 2026-03-10 00:58:32,593 | INFO     | [payload] validate_pre thread has finished
[2026-03-10 01:59:06] 2026-03-10 00:58:32,694 | INFO     | [data] copytool_in thread has finished
[2026-03-10 01:59:06] 2026-03-10 00:58:32,884 | INFO     | [payload] failed_post thread has finished
[2026-03-10 01:59:06] 2026-03-10 00:58:32,915 | INFO     | [data] copytool_out thread has finished
[2026-03-10 01:59:06] 2026-03-10 00:58:35,764 | INFO     | [data] queue_monitor thread has finished
[2026-03-10 01:59:06] 2026-03-10 00:58:40,874 | INFO     | job.realtimelogging is not enabled
[2026-03-10 01:59:06] 2026-03-10 00:58:41,880 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-10 01:59:06] 2026-03-10 00:59:00,900 | INFO     | [monitor] cgroup control has ended
[2026-03-10 01:59:06] 2026-03-10 00:59:01,762 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140408958592832)>', '<ExcThread(monitor, started 140408092870400)>']
[2026-03-10 01:59:06] 2026-03-10 00:59:02,591 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-10 01:59:06] 2026-03-10 00:59:02,591 | INFO     | [monitor] control thread has ended
[2026-03-10 01:59:06] 2026-03-10 00:59:06,788 | INFO     | all workflow threads have been joined
[2026-03-10 01:59:06] 2026-03-10 00:59:06,788 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-10 01:59:06] 2026-03-10 00:59:06,788 | INFO     | traces error code: 0
[2026-03-10 01:59:06] 2026-03-10 00:59:06,788 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-10 01:59:06] 2026-03-10 00:59:06,857 [wrapper] ==== pilot stdout END ====
[2026-03-10 01:59:06] 2026-03-10 00:59:06,861 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-10 01:59:06] 2026-03-10 00:59:06,865 [wrapper] pilotpid: 1472333
[2026-03-10 01:59:06] 2026-03-10 00:59:06,868 [wrapper] Pilot exit status: 0
[2026-03-10 01:59:06] 2026-03-10 00:59:06,879 [wrapper] pandaids: 7040758925
[2026-03-10 01:59:06] 2026-03-10 00:59:06,899 [wrapper] cleanup supervisor_pilot 1481908 1472334
[2026-03-10 01:59:06] 2026-03-10 00:59:06,903 [wrapper] Test setup, not cleaning
[2026-03-10 01:59:06] 2026-03-10 00:59:06,907 [wrapper] apfmon messages muted
[2026-03-10 01:59:06] 2026-03-10 00:59:06,910 [wrapper] ==== wrapper stdout END ====
[2026-03-10 01:59:06] 2026-03-10 00:59:06,913 [wrapper] ==== wrapper stderr END ====
[2026-03-10 01:59:06]  *** Error codes and diagnostics ***
[2026-03-10 01:59:06]     "exeErrorCode": 0,
[2026-03-10 01:59:06]     "exeErrorDiag": "",
[2026-03-10 01:59:06]     "pilotErrorCode": 0,
[2026-03-10 01:59:06]     "pilotErrorDiag": "",
[2026-03-10 01:59:06]  *** Listing of results directory ***
[2026-03-10 01:59:06] total 629292
[2026-03-10 01:59:06] -rw-r--r-- 1 boinc boinc    584627 Mar  9 09:26 pilot3.tar.gz
[2026-03-10 01:59:06] -rwx------ 1 boinc boinc     36322 Mar  9 09:26 runpilot2-wrapper.sh
[2026-03-10 01:59:06] -rw-r--r-- 1 boinc boinc      5111 Mar  9 09:27 queuedata.json
[2026-03-10 01:59:06] -rw-r--r-- 1 boinc boinc       100 Mar 10 00:49 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-10 01:59:06] -rwxr-xr-x 1 boinc boinc      7986 Mar 10 00:49 run_atlas
[2026-03-10 01:59:06] -rw-r--r-- 1 boinc boinc       105 Mar 10 00:49 job.xml
[2026-03-10 01:59:06] -rw-r--r-- 2 boinc boinc 444224634 Mar 10 00:49 EVNT.46701403._000682.pool.root.1
[2026-03-10 01:59:06] -rw-r--r-- 2 boinc boinc    597960 Mar 10 00:49 input.tar.gz
[2026-03-10 01:59:06] -rw-r--r-- 2 boinc boinc     15845 Mar 10 00:49 start_atlas.sh
[2026-03-10 01:59:06] drwxrwx--x 2 boinc boinc      4096 Mar 10 00:49 shared
[2026-03-10 01:59:06] -rw-r--r-- 1 boinc boinc         0 Mar 10 00:49 boinc_setup_complete
[2026-03-10 01:59:06] -rw-r--r-- 1 boinc boinc      6369 Mar 10 00:49 init_data.xml
[2026-03-10 01:59:06] -rw-r--r-- 1 boinc boinc         0 Mar 10 00:49 boinc_lockfile
[2026-03-10 01:59:06] -rw-r--r-- 1 boinc boinc      2565 Mar 10 00:49 pandaJob.out
[2026-03-10 01:59:06] -rw------- 1 boinc boinc   1002738 Mar 10 00:49 agis_schedconf.cvmfs.json
[2026-03-10 01:59:06] -rw------- 1 boinc boinc   1511578 Mar 10 00:49 agis_ddmendpoints.agis.ALL.json
[2026-03-10 01:59:06] -rw------- 1 boinc boinc       427 Mar 10 00:49 workernode_map.json
[2026-03-10 01:59:06] drwx------ 5 boinc boinc      4096 Mar 10 00:49 pilot3
[2026-03-10 01:59:06] -rw------- 1 boinc boinc 194418170 Mar 10 01:58 HITS.48955006._034120.pool.root.1
[2026-03-10 01:59:06] -rw-r--r-- 1 boinc boinc       530 Mar 10 01:58 boinc_task_state.xml
[2026-03-10 01:59:06] -rw------- 1 boinc boinc        95 Mar 10 01:58 pilot_heartbeat.json
[2026-03-10 01:59:06] -rw------- 1 boinc boinc      1020 Mar 10 01:58 memory_monitor_summary.json
[2026-03-10 01:59:06] -rw------- 1 boinc boinc    298779 Mar 10 01:58 log.48955006._034120.job.log.tgz.1
[2026-03-10 01:59:06] -rw------- 1 boinc boinc      6320 Mar 10 01:58 heartbeat.json
[2026-03-10 01:59:06] -rw-r--r-- 1 boinc boinc      8192 Mar 10 01:58 boinc_mmap_file
[2026-03-10 01:59:06] -rw-r--r-- 1 boinc boinc        27 Mar 10 01:58 wrapper_checkpoint.txt
[2026-03-10 01:59:06] -rw------- 1 boinc boinc      4624 Mar 10 01:59 pilotlog.txt
[2026-03-10 01:59:06] -rw------- 1 boinc boinc    612565 Mar 10 01:59 log.48955006._034120.job.log.1
[2026-03-10 01:59:06] -rw------- 1 boinc boinc       357 Mar 10 01:59 output.list
[2026-03-10 01:59:06] -rw-r--r-- 1 boinc boinc       620 Mar 10 01:59 runtime_log
[2026-03-10 01:59:06] -rw------- 1 boinc boinc    931840 Mar 10 01:59 result.tar.gz
[2026-03-10 01:59:06] -rw-r--r-- 1 boinc boinc      8896 Mar 10 01:59 runtime_log.err
[2026-03-10 01:59:06] -rw------- 1 boinc boinc       657 Mar 10 01:59 3AMODm27kJ9n9Rq4apOajLDm4fhM0noT9bVooX4SDmpIZLDmKZxjLn.diag
[2026-03-10 01:59:06] -rw-r--r-- 1 boinc boinc     12877 Mar 10 01:59 stderr.txt
[2026-03-10 01:59:06] HITS file was successfully produced:
[2026-03-10 01:59:06] -rw------- 1 boinc boinc 194418170 Mar 10 01:58 shared/HITS.pool.root.1
[2026-03-10 01:59:06]  *** Contents of shared directory: ***
[2026-03-10 01:59:06] total 625200
[2026-03-10 01:59:06] -rw-r--r-- 2 boinc boinc 444224634 Mar 10 00:49 ATLAS.root_0
[2026-03-10 01:59:06] -rw-r--r-- 2 boinc boinc    597960 Mar 10 00:49 input.tar.gz
[2026-03-10 01:59:06] -rw-r--r-- 2 boinc boinc     15845 Mar 10 00:49 start_atlas.sh
[2026-03-10 01:59:06] -rw------- 1 boinc boinc 194418170 Mar 10 01:58 HITS.pool.root.1
[2026-03-10 01:59:06] -rw------- 1 boinc boinc    931840 Mar 10 01:59 result.tar.gz
01:59:08 (1468216): run_atlas exited; CPU time 15268.483250
01:59:08 (1468216): called boinc_finish(0)

</stderr_txt>
]]>

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