Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:21:07 (1290629): wrapper (7.7.26015): starting
13:21:07 (1290629): wrapper: running run_atlas (--nthreads 4)
[2026-03-09 13:21:07] Arguments: --nthreads 4
[2026-03-09 13:21:07] Threads: 4
[2026-03-09 13:21:07] Checking for CVMFS
[2026-03-09 13:21:07] No cvmfs_config command found, will try listing directly
[2026-03-09 13:21:07] CVMFS is ok
[2026-03-09 13:21:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-09 13:21:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-09 13:21:07] Further information can be found at the LHC@home message board.
[2026-03-09 13:21:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-09 13:21:07] Checking for apptainer binary...
[2026-03-09 13:21:07] which: no apptainer in ((null))
[2026-03-09 13:21:07] apptainer is not installed, using version from CVMFS
[2026-03-09 13:21:07] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-09 13:21:07] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot16/slots/6/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut25.grid.cesnet.cz
[2026-03-09 13:21:07] apptainer works
[2026-03-09 13:21:07] Set ATHENA_PROC_NUMBER=4
[2026-03-09 13:21:07] Set ATHENA_CORE_NUMBER=4
[2026-03-09 13:21:07] Starting ATLAS job with PandaID=7040731580
[2026-03-09 13:21:07] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot16/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-09 14:39:34]  *** The last 200 lines of the pilot log: ***
[2026-03-09 14:39:34]  lfn=log.48955010._016948.job.log.tgz.1
[2026-03-09 14:39:34]  mtime=0
[2026-03-09 14:39:34]  protocol_id=None
[2026-03-09 14:39:34]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-09 14:39:34]  replicas=None
[2026-03-09 14:39:34]  scope=mc23_13p6TeV
[2026-03-09 14:39:34]  status=None
[2026-03-09 14:39:34]  status_code=0
[2026-03-09 14:39:34]  storage_token=
[2026-03-09 14:39:34]  surl=/var/lib/boinc/var/slot16/slots/6/PanDA_Pilot-7040731580/log.48955010._016948.job.log.tgz.1
[2026-03-09 14:39:34]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2f/bb/log.48955010._016948.job.log.tgz.1
[2026-03-09 14:39:34]  workdir=None
[2026-03-09 14:39:34] ]
[2026-03-09 14:39:34] 2026-03-09 13:38:56,729 | INFO     | transferring file log.48955010._016948.job.log.tgz.1 from /var/lib/boinc/var/slot16/slots/6/PanDA_Pilot-7040731580/log.48955010._016948.job.log.tgz.1 to /var/lib/b
[2026-03-09 14:39:34] 2026-03-09 13:38:56,730 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot16/slots/6/PanDA_Pilot-7040731580/log.48955010._016948.job.log.tgz.1 /var/lib/boinc/var/slot16/slots/6/lo
[2026-03-09 14:39:34] 2026-03-09 13:38:56,749 | INFO     | adding to output.list: log.48955010._016948.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2f/bb/log.48955010._016948.job.log.tg
[2026-03-09 14:39:34] 2026-03-09 13:38:56,750 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-09 14:39:34] 2026-03-09 13:38:56,750 | INFO     | summary of transferred files:
[2026-03-09 14:39:34] 2026-03-09 13:38:56,750 | INFO     |  -- lfn=log.48955010._016948.job.log.tgz.1, status_code=0, status=transferred
[2026-03-09 14:39:34] 2026-03-09 13:38:56,750 | INFO     | stage-out finished correctly
[2026-03-09 14:39:34] 2026-03-09 13:38:57,559 | INFO     | PID=1295370 has CPU usage=12.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-09 14:39:34] 2026-03-09 13:38:57,559 | INFO     | .. there are 54 such processes running
[2026-03-09 14:39:34] 2026-03-09 13:38:58,560 | INFO     | time since job start (4658s) is within the limit (349056.0s)
[2026-03-09 14:39:34] 2026-03-09 13:38:58,791 | INFO     | monitor loop #338: job 0:7040731580 is in state 'finished'
[2026-03-09 14:39:34] 2026-03-09 13:38:58,791 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-09 14:39:34] 2026-03-09 13:38:58,797 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-09 14:39:34] 2026-03-09 13:39:00,565 | INFO     | time since job start (4660s) is within the limit (349056.0s)
[2026-03-09 14:39:34] 2026-03-09 13:39:01,294 | INFO     | monitor loop #339: job 0:7040731580 is in state 'finished'
[2026-03-09 14:39:34] 2026-03-09 13:39:01,294 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-09 14:39:34] 2026-03-09 13:39:01,604 | INFO     | job 7040731580 has state=finished
[2026-03-09 14:39:34] 2026-03-09 13:39:01,604 | INFO     | preparing for final server update for job 7040731580 in state='finished'
[2026-03-09 14:39:34] 2026-03-09 13:39:01,604 | INFO     | reading metadata from: /var/lib/boinc/var/slot16/slots/6/PanDA_Pilot-7040731580/jobReport.json
[2026-03-09 14:39:34] 2026-03-09 13:39:01,606 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot16/slots/6/workernode_map.json
[2026-03-09 14:39:34] 2026-03-09 13:39:01,606 | INFO     | this job has now completed (state=finished)
[2026-03-09 14:39:34] 2026-03-09 13:39:01,606 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-09 14:39:34] 2026-03-09 13:39:01,606 | INFO     | log transfer has been attempted: DONE
[2026-03-09 14:39:34] 2026-03-09 13:39:01,606 | INFO     | job 7040731580 has finished - writing final server update
[2026-03-09 14:39:34] 2026-03-09 13:39:01,606 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_40791/.job.ad'
[2026-03-09 14:39:34] 2026-03-09 13:39:01,606 | INFO     | total number of processed events: 400 (read)
[2026-03-09 14:39:34] 2026-03-09 13:39:01,622 | INFO     | using path: /var/lib/boinc/var/slot16/slots/6/PanDA_Pilot-7040731580/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 14:39:34] 2026-03-09 13:39:01,623 | INFO     | extracted standard info from prmon json
[2026-03-09 14:39:34] 2026-03-09 13:39:01,623 | INFO     | extracted standard memory fields from prmon json
[2026-03-09 14:39:34] 2026-03-09 13:39:01,623 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-09 14:39:34] 2026-03-09 13:39:01,623 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-09 14:39:34] 2026-03-09 13:39:01,623 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-09 14:39:34] 2026-03-09 13:39:01,624 | INFO     | fitting pss+swap vs Time
[2026-03-09 14:39:34] 2026-03-09 13:39:01,624 | INFO     | sum of square deviations: 101843770.0
[2026-03-09 14:39:34] 2026-03-09 13:39:01,624 | INFO     | sum of deviations: 552197315.0
[2026-03-09 14:39:34] 2026-03-09 13:39:01,625 | INFO     | mean x: 1773061281.0
[2026-03-09 14:39:34] 2026-03-09 13:39:01,625 | INFO     | mean y: 2320851.086956522
[2026-03-09 14:39:34] 2026-03-09 13:39:01,625 | INFO     | intersect: -9611224274.929691
[2026-03-09 14:39:34] 2026-03-09 13:39:01,625 | INFO     | chi2: 0.00011299208229515743
[2026-03-09 14:39:34] 2026-03-09 13:39:01,625 | INFO     | current memory leak: 5.42 B/s (using 69 data points, chi2=0.00)
[2026-03-09 14:39:34] 2026-03-09 13:39:01,625 | INFO     | could have reported an average CPU frequency of 3585 MHz (6 samples)
[2026-03-09 14:39:34] 2026-03-09 13:39:01,625 | INFO     | ..............................
[2026-03-09 14:39:34] 2026-03-09 13:39:01,625 | INFO     | . Timing measurements:
[2026-03-09 14:39:34] 2026-03-09 13:39:01,625 | INFO     | . get job = 0 s
[2026-03-09 14:39:34] 2026-03-09 13:39:01,625 | INFO     | . initial setup = 5 s
[2026-03-09 14:39:34] 2026-03-09 13:39:01,625 | INFO     | . payload setup = 5 s
[2026-03-09 14:39:34] 2026-03-09 13:39:01,625 | INFO     | . stage-in = 0 s
[2026-03-09 14:39:34] 2026-03-09 13:39:01,625 | INFO     | . payload execution = 4634 s
[2026-03-09 14:39:34] 2026-03-09 13:39:01,625 | INFO     | . stage-out = 0 s
[2026-03-09 14:39:34] 2026-03-09 13:39:01,625 | INFO     | . log creation = 0 s
[2026-03-09 14:39:34] 2026-03-09 13:39:01,625 | INFO     | ..............................
[2026-03-09 14:39:34] 2026-03-09 13:39:01,723 | INFO     | 
[2026-03-09 14:39:34] 2026-03-09 13:39:01,723 | INFO     | job summary report
[2026-03-09 14:39:34] 2026-03-09 13:39:01,723 | INFO     | --------------------------------------------------
[2026-03-09 14:39:34] 2026-03-09 13:39:01,723 | INFO     | PanDA job id: 7040731580
[2026-03-09 14:39:34] 2026-03-09 13:39:01,723 | INFO     | task id: 48955010
[2026-03-09 14:39:34] 2026-03-09 13:39:01,724 | INFO     | errors: (none)
[2026-03-09 14:39:34] 2026-03-09 13:39:01,724 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-09 14:39:34] 2026-03-09 13:39:01,724 | INFO     | pilot state: finished 
[2026-03-09 14:39:34] 2026-03-09 13:39:01,724 | INFO     | transexitcode: 0
[2026-03-09 14:39:34] 2026-03-09 13:39:01,724 | INFO     | exeerrorcode: 0
[2026-03-09 14:39:34] 2026-03-09 13:39:01,724 | INFO     | exeerrordiag: 
[2026-03-09 14:39:34] 2026-03-09 13:39:01,724 | INFO     | exitcode: 0
[2026-03-09 14:39:34] 2026-03-09 13:39:01,724 | INFO     | exitmsg: OK
[2026-03-09 14:39:34] 2026-03-09 13:39:01,724 | INFO     | cpuconsumptiontime: 17659 s
[2026-03-09 14:39:34] 2026-03-09 13:39:01,724 | INFO     | nevents: 400
[2026-03-09 14:39:34] 2026-03-09 13:39:01,724 | INFO     | neventsw: 0
[2026-03-09 14:39:34] 2026-03-09 13:39:01,724 | INFO     | pid: 1308022
[2026-03-09 14:39:34] 2026-03-09 13:39:01,724 | INFO     | pgrp: 1308022
[2026-03-09 14:39:34] 2026-03-09 13:39:01,724 | INFO     | corecount: 4
[2026-03-09 14:39:34] 2026-03-09 13:39:01,724 | INFO     | event service: False
[2026-03-09 14:39:34] 2026-03-09 13:39:01,724 | INFO     | sizes: {0: 2280188, 11: 2280188, 4643: 2306444, 4645: 2315464, 4647: 2315520, 4649: 2315714}
[2026-03-09 14:39:34] 2026-03-09 13:39:01,724 | INFO     | --------------------------------------------------
[2026-03-09 14:39:34] 2026-03-09 13:39:01,724 | INFO     | 
[2026-03-09 14:39:34] 2026-03-09 13:39:01,724 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot16/slots/6
[2026-03-09 14:39:34] 2026-03-09 13:39:01,742 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-09 14:39:34] 2026-03-09 13:39:01,742 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-09 14:39:34] 2026-03-09 13:39:01,742 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-09 14:39:34] 2026-03-09 13:39:01,742 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-09 14:39:34] 2026-03-09 13:39:01,742 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-09 14:39:34] 2026-03-09 13:39:01,742 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-09 14:39:34] 2026-03-09 13:39:01,742 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-09 14:39:34] 2026-03-09 13:39:01,742 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-09 14:39:34] 2026-03-09 13:39:01,742 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-09 14:39:34] 2026-03-09 13:39:01,742 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-09 14:39:34] 2026-03-09 13:39:01,742 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-09 14:39:34] 2026-03-09 13:39:01,742 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-09 14:39:34] 2026-03-09 13:39:01,742 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-09 14:39:34] 2026-03-09 13:39:01,742 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-09 14:39:34] 2026-03-09 13:39:01,742 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-09 14:39:34] 2026-03-09 13:39:01,742 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-09 14:39:34] 2026-03-09 13:39:01,742 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-09 14:39:34] 2026-03-09 13:39:01,743 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-09 14:39:34] 2026-03-09 13:39:01,743 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-09 14:39:34] 2026-03-09 13:39:01,743 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-09 14:39:34] 2026-03-09 13:39:01,743 | INFO     | job 7040731580 has completed (purged errors)
[2026-03-09 14:39:34] 2026-03-09 13:39:01,743 | INFO     | overall cleanup function is called
[2026-03-09 14:39:34] 2026-03-09 13:39:02,749 | INFO     | --- collectZombieJob: --- 10, [1308022]
[2026-03-09 14:39:34] 2026-03-09 13:39:02,749 | INFO     | zombie collector waiting for pid 1308022
[2026-03-09 14:39:34] 2026-03-09 13:39:02,749 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-09 14:39:34] 2026-03-09 13:39:02,749 | INFO     | collected zombie processes
[2026-03-09 14:39:34] 2026-03-09 13:39:02,749 | INFO     | will attempt to kill all subprocesses of pid=1308022
[2026-03-09 14:39:34] 2026-03-09 13:39:03,205 | INFO     | process IDs to be killed: [1308022] (in reverse order)
[2026-03-09 14:39:34] 2026-03-09 13:39:03,412 | WARNING  | found no corresponding commands to process id(s)
[2026-03-09 14:39:34] 2026-03-09 13:39:03,412 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-09 14:39:34] 2026-03-09 13:39:03,438 | INFO     | did not find any defunct processes belonging to 1308022
[2026-03-09 14:39:34] 2026-03-09 13:39:03,463 | INFO     | did not find any defunct processes belonging to 1308022
[2026-03-09 14:39:34] 2026-03-09 13:39:03,463 | INFO     | ready for new job
[2026-03-09 14:39:34] 2026-03-09 13:39:03,464 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-09 14:39:34] 2026-03-09 13:39:03,465 | INFO     | **************************************
[2026-03-09 14:39:34] 2026-03-09 13:39:03,465 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-09 14:39:34] 2026-03-09 13:39:03,465 | INFO     | **************************************
[2026-03-09 14:39:34] 2026-03-09 13:39:03,465 | INFO     | 
[2026-03-09 14:39:34] 2026-03-09 13:39:03,470 | INFO     | architecture information:
[2026-03-09 14:39:34] 2026-03-09 13:39:03,471 | INFO     | executing command: cat /etc/os-release
[2026-03-09 14:39:34] 2026-03-09 13:39:03,485 | INFO     | cat /etc/os-release:
[2026-03-09 14:39:34] NAME="CentOS Linux"
[2026-03-09 14:39:34] VERSION="7 (Core)"
[2026-03-09 14:39:34] ID="centos"
[2026-03-09 14:39:34] ID_LIKE="rhel fedora"
[2026-03-09 14:39:34] VERSION_ID="7"
[2026-03-09 14:39:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-09 14:39:34] ANSI_COLOR="0;31"
[2026-03-09 14:39:34] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-09 14:39:34] HOME_URL="https://www.centos.org/"
[2026-03-09 14:39:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-09 14:39:34] 
[2026-03-09 14:39:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-09 14:39:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-09 14:39:34] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-09 14:39:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-09 14:39:34] 
[2026-03-09 14:39:34] 2026-03-09 13:39:03,485 | INFO     | **************************************
[2026-03-09 14:39:34] 2026-03-09 13:39:03,988 | INFO     | executing command: df -mP /var/lib/boinc/var/slot16/slots/6
[2026-03-09 14:39:34] 2026-03-09 13:39:04,004 | INFO     | sufficient remaining disk space (20482883584 B)
[2026-03-09 14:39:34] 2026-03-09 13:39:04,004 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-09 14:39:34] 2026-03-09 13:39:04,004 | INFO     | current server update state: UPDATING_FINAL
[2026-03-09 14:39:34] 2026-03-09 13:39:04,004 | INFO     | update_server=False
[2026-03-09 14:39:34] 2026-03-09 13:39:04,004 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-09 14:39:34] 2026-03-09 13:39:04,250 | INFO     | all payload control threads have been joined
[2026-03-09 14:39:34] 2026-03-09 13:39:04,803 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-09 14:39:34] 2026-03-09 13:39:04,803 | INFO     | aborting loop
[2026-03-09 14:39:34] 2026-03-09 13:39:04,814 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-09 14:39:34] 2026-03-09 13:39:04,852 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-09 14:39:34] 2026-03-09 13:39:05,010 | INFO     | [job] retrieve thread has finished
[2026-03-09 14:39:34] 2026-03-09 13:39:05,062 | INFO     | all data control threads have been joined
[2026-03-09 14:39:34] 2026-03-09 13:39:05,255 | INFO     | all job control threads have been joined
[2026-03-09 14:39:34] 2026-03-09 13:39:05,255 | INFO     | [payload] control thread has finished
[2026-03-09 14:39:34] 2026-03-09 13:39:05,618 | INFO     | [payload] failed_post thread has finished
[2026-03-09 14:39:34] 2026-03-09 13:39:05,653 | INFO     | [payload] validate_post thread has finished
[2026-03-09 14:39:34] 2026-03-09 13:39:05,791 | INFO     | [payload] validate_pre thread has finished
[2026-03-09 14:39:34] 2026-03-09 13:39:05,797 | INFO     | [job] validate thread has finished
[2026-03-09 14:39:34] 2026-03-09 13:39:05,808 | INFO     | [job] job monitor thread has finished
[2026-03-09 14:39:34] 2026-03-09 13:39:06,067 | INFO     | [data] control thread has finished
[2026-03-09 14:39:34] 2026-03-09 13:39:06,090 | INFO     | [job] create_data_payload thread has finished
[2026-03-09 14:39:34] 2026-03-09 13:39:06,131 | INFO     | [data] copytool_in thread has finished
[2026-03-09 14:39:34] 2026-03-09 13:39:06,260 | INFO     | [job] control thread has finished
[2026-03-09 14:39:34] 2026-03-09 13:39:06,499 | INFO     | [payload] execute_payloads thread has finished
[2026-03-09 14:39:34] 2026-03-09 13:39:06,679 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-09 14:39:34] 2026-03-09 13:39:06,819 | INFO     | [data] copytool_out thread has finished
[2026-03-09 14:39:34] 2026-03-09 13:39:07,684 | INFO     | [job] queue monitor thread has finished
[2026-03-09 14:39:34] 2026-03-09 13:39:08,857 | INFO     | [data] queue_monitor thread has finished
[2026-03-09 14:39:34] 2026-03-09 13:39:14,568 | INFO     | job.realtimelogging is not enabled
[2026-03-09 14:39:34] 2026-03-09 13:39:15,573 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-09 14:39:34] 2026-03-09 13:39:28,085 | INFO     | [monitor] cgroup control has ended
[2026-03-09 14:39:34] 2026-03-09 13:39:28,658 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22991986837312)>', '<ExcThread(monitor, started 22991737181952)>']
[2026-03-09 14:39:34] 2026-03-09 13:39:33,677 | INFO     | all workflow threads have been joined
[2026-03-09 14:39:34] 2026-03-09 13:39:33,677 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-09 14:39:34] 2026-03-09 13:39:33,678 | INFO     | traces error code: 0
[2026-03-09 14:39:34] 2026-03-09 13:39:33,678 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-09 14:39:34] 2026-03-09 13:39:34,158 | INFO     | PID=1295370 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-09 14:39:34] 2026-03-09 13:39:34,158 | INFO     | .. there are 54 such processes running
[2026-03-09 14:39:34] 2026-03-09 13:39:34,158 | INFO     | found 0 job(s) in 20 queues
[2026-03-09 14:39:34] 2026-03-09 13:39:34,158 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-09 14:39:34] 2026-03-09 13:39:34,158 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-09 14:39:34] 2026-03-09 13:39:34,158 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-09 14:39:34] 2026-03-09 13:39:34,158 | INFO     | [monitor] control thread has ended
[2026-03-09 14:39:34] 2026-03-09 13:39:34,294 [wrapper] ==== pilot stdout END ====
[2026-03-09 14:39:34] 2026-03-09 13:39:34,299 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-09 14:39:34] 2026-03-09 13:39:34,302 [wrapper] pilotpid: 1295370
[2026-03-09 14:39:34] 2026-03-09 13:39:34,304 [wrapper] Pilot exit status: 0
[2026-03-09 14:39:34] 2026-03-09 13:39:34,312 [wrapper] pandaids: 7040731580
[2026-03-09 14:39:34] 2026-03-09 13:39:34,425 [wrapper] cleanup supervisor_pilot 2086752 1295372
[2026-03-09 14:39:34] 2026-03-09 13:39:34,427 [wrapper] Test setup, not cleaning
[2026-03-09 14:39:34] 2026-03-09 13:39:34,430 [wrapper] apfmon messages muted
[2026-03-09 14:39:34] 2026-03-09 13:39:34,432 [wrapper] ==== wrapper stdout END ====
[2026-03-09 14:39:34] 2026-03-09 13:39:34,434 [wrapper] ==== wrapper stderr END ====
[2026-03-09 14:39:34]  *** Error codes and diagnostics ***
[2026-03-09 14:39:34]     "exeErrorCode": 0,
[2026-03-09 14:39:34]     "exeErrorDiag": "",
[2026-03-09 14:39:34]     "pilotErrorCode": 0,
[2026-03-09 14:39:34]     "pilotErrorDiag": "",
[2026-03-09 14:39:34]  *** Listing of results directory ***
[2026-03-09 14:39:34] total 612688
[2026-03-09 14:39:34] -rw-r--r--. 1 boinc boinc    584627 Mar  9 08:59 pilot3.tar.gz
[2026-03-09 14:39:34] -rwx------. 1 boinc boinc     36322 Mar  9 09:02 runpilot2-wrapper.sh
[2026-03-09 14:39:34] -rw-r--r--. 1 boinc boinc      5111 Mar  9 09:04 queuedata.json
[2026-03-09 14:39:34] -rw-r--r--. 1 boinc boinc       100 Mar  9 13:21 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-09 14:39:34] -rwxr-xr-x. 1 boinc boinc      7986 Mar  9 13:21 run_atlas
[2026-03-09 14:39:34] -rw-r--r--. 1 boinc boinc       105 Mar  9 13:21 job.xml
[2026-03-09 14:39:34] -rw-r--r--. 1 boinc boinc      6699 Mar  9 13:21 init_data.xml
[2026-03-09 14:39:34] -rw-r--r--. 2 boinc boinc 441568408 Mar  9 13:21 EVNT.46701403._001339.pool.root.1
[2026-03-09 14:39:34] -rw-r--r--. 2 boinc boinc     15845 Mar  9 13:21 start_atlas.sh
[2026-03-09 14:39:34] drwxrwx--x. 2 boinc boinc      4096 Mar  9 13:21 shared
[2026-03-09 14:39:34] -rw-r--r--. 2 boinc boinc    597954 Mar  9 13:21 input.tar.gz
[2026-03-09 14:39:34] -rw-r--r--. 1 boinc boinc         0 Mar  9 13:21 boinc_lockfile
[2026-03-09 14:39:34] -rw-r--r--. 1 boinc boinc      2562 Mar  9 13:21 pandaJob.out
[2026-03-09 14:39:34] -rw-------. 1 boinc boinc    990710 Mar  9 13:21 agis_schedconf.cvmfs.json
[2026-03-09 14:39:34] -rw-------. 1 boinc boinc   1511578 Mar  9 13:21 agis_ddmendpoints.agis.ALL.json
[2026-03-09 14:39:34] -rw-------. 1 boinc boinc       444 Mar  9 13:21 workernode_map.json
[2026-03-09 14:39:34] drwx------. 5 boinc boinc      4096 Mar  9 13:21 pilot3
[2026-03-09 14:39:34] -rw-------. 1 boinc boinc 179991366 Mar  9 14:38 HITS.48955010._016948.pool.root.1
[2026-03-09 14:39:34] -rw-------. 1 boinc boinc        95 Mar  9 14:38 pilot_heartbeat.json
[2026-03-09 14:39:34] -rw-------. 1 boinc boinc      1030 Mar  9 14:38 memory_monitor_summary.json
[2026-03-09 14:39:34] -rw-------. 1 boinc boinc    270621 Mar  9 14:38 log.48955010._016948.job.log.tgz.1
[2026-03-09 14:39:34] -rw-r--r--. 1 boinc boinc       530 Mar  9 14:38 boinc_task_state.xml
[2026-03-09 14:39:34] -rw-------. 1 boinc boinc      6352 Mar  9 14:39 heartbeat.json
[2026-03-09 14:39:34] -rw-r--r--. 1 boinc boinc      8192 Mar  9 14:39 boinc_mmap_file
[2026-03-09 14:39:34] -rw-r--r--. 1 boinc boinc        27 Mar  9 14:39 wrapper_checkpoint.txt
[2026-03-09 14:39:34] -rw-------. 1 boinc boinc       823 Mar  9 14:39 pilotlog.txt
[2026-03-09 14:39:34] -rw-------. 1 boinc boinc    685779 Mar  9 14:39 log.48955010._016948.job.log.1
[2026-03-09 14:39:34] -rw-------. 1 boinc boinc       357 Mar  9 14:39 output.list
[2026-03-09 14:39:34] -rw-r--r--. 1 boinc boinc       620 Mar  9 14:39 runtime_log
[2026-03-09 14:39:34] -rw-------. 1 boinc boinc    972800 Mar  9 14:39 result.tar.gz
[2026-03-09 14:39:34] -rw-r--r--. 1 boinc boinc      9204 Mar  9 14:39 runtime_log.err
[2026-03-09 14:39:34] -rw-------. 1 boinc boinc       663 Mar  9 14:39 c8BODmvkkJ9n9Rq4apOajLDm4fhM0noT9bVooX4SDmpEZLDmCVxasn.diag
[2026-03-09 14:39:34] -rw-r--r--. 1 boinc boinc     21583 Mar  9 14:39 stderr.txt
[2026-03-09 14:39:34] HITS file was successfully produced:
[2026-03-09 14:39:34] -rw-------. 1 boinc boinc 179991366 Mar  9 14:38 shared/HITS.pool.root.1
[2026-03-09 14:39:34]  *** Contents of shared directory: ***
[2026-03-09 14:39:34] total 608556
[2026-03-09 14:39:34] -rw-r--r--. 2 boinc boinc 441568408 Mar  9 13:21 ATLAS.root_0
[2026-03-09 14:39:34] -rw-r--r--. 2 boinc boinc     15845 Mar  9 13:21 start_atlas.sh
[2026-03-09 14:39:34] -rw-r--r--. 2 boinc boinc    597954 Mar  9 13:21 input.tar.gz
[2026-03-09 14:39:34] -rw-------. 1 boinc boinc 179991366 Mar  9 14:38 HITS.pool.root.1
[2026-03-09 14:39:34] -rw-------. 1 boinc boinc    972800 Mar  9 14:39 result.tar.gz
14:39:35 (1290629): run_atlas exited; CPU time 17835.363048
14:39:35 (1290629): called boinc_finish(0)

</stderr_txt>
]]>

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