Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:52:08 (1656037): wrapper (7.7.26015): starting
19:52:08 (1656037): wrapper: running run_atlas (--nthreads 2)
[2026-03-09 19:52:08] Arguments: --nthreads 2
[2026-03-09 19:52:08] Threads: 2
[2026-03-09 19:52:08] Checking for CVMFS
[2026-03-09 19:52:08] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-09 19:52:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-09 19:52:08] Running cvmfs_config stat atlas.cern.ch
[2026-03-09 19:52:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-09 19:52:08] 2.9.2.0 838544 8391 59112 157086 2 50 26650956 36864000 0 130560 0 2372828 99.977 301116 10734 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-09 19:52:08] CVMFS is ok
[2026-03-09 19:52:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-09 19:52:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-09 19:52:08] Further information can be found at the LHC@home message board.
[2026-03-09 19:52:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-09 19:52:08] Checking for apptainer binary...
[2026-03-09 19:52:08] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-09 19:52:08] Running /usr/bin/apptainer --version
[2026-03-09 19:52:08] apptainer version 1.4.1-1.1
[2026-03-09 19:52:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-09 19:52:09] legendA165
[2026-03-09 19:52:09] apptainer works
[2026-03-09 19:52:09] Set ATHENA_PROC_NUMBER=2
[2026-03-09 19:52:09] Set ATHENA_CORE_NUMBER=2
[2026-03-09 19:52:09] Starting ATLAS job with PandaID=7034331578
[2026-03-09 19:52:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-09 21:27:48]  *** The last 200 lines of the pilot log: ***
[2026-03-09 21:27:48] 2026-03-09 20:27:16,878 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-09 21:27:48] 2026-03-09 20:27:16,878 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-09 21:27:48] 2026-03-09 20:27:16,878 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-09 21:27:48] 2026-03-09 20:27:16,878 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-09 21:27:48] 2026-03-09 20:27:16,879 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-09 21:27:48] 2026-03-09 20:27:16,879 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-09 21:27:48] 2026-03-09 20:27:16,879 | INFO     | job 7034331578 has completed (purged errors)
[2026-03-09 21:27:48] 2026-03-09 20:27:16,879 | INFO     | overall cleanup function is called
[2026-03-09 21:27:48] 2026-03-09 20:27:17,885 | INFO     | --- collectZombieJob: --- 10, [1664469]
[2026-03-09 21:27:48] 2026-03-09 20:27:17,885 | INFO     | zombie collector waiting for pid 1664469
[2026-03-09 21:27:48] 2026-03-09 20:27:17,885 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-09 21:27:48] 2026-03-09 20:27:17,886 | INFO     | collected zombie processes
[2026-03-09 21:27:48] 2026-03-09 20:27:17,886 | INFO     | will attempt to kill all subprocesses of pid=1664469
[2026-03-09 21:27:48] 2026-03-09 20:27:17,915 | INFO     | process IDs to be killed: [1664469] (in reverse order)
[2026-03-09 21:27:48] 2026-03-09 20:27:17,937 | WARNING  | found no corresponding commands to process id(s)
[2026-03-09 21:27:48] 2026-03-09 20:27:17,937 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-09 21:27:48] 2026-03-09 20:27:17,937 | INFO     | did not find any defunct processes belonging to 1664469
[2026-03-09 21:27:48] 2026-03-09 20:27:17,938 | INFO     | did not find any defunct processes belonging to 1664469
[2026-03-09 21:27:48] 2026-03-09 20:27:17,938 | INFO     | ready for new job
[2026-03-09 21:27:48] 2026-03-09 20:27:17,938 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-09 21:27:48] 2026-03-09 20:27:17,938 | INFO     | **************************************
[2026-03-09 21:27:48] 2026-03-09 20:27:17,938 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-09 21:27:48] 2026-03-09 20:27:17,939 | INFO     | **************************************
[2026-03-09 21:27:48] 2026-03-09 20:27:17,939 | INFO     | 
[2026-03-09 21:27:48] 2026-03-09 20:27:17,939 | INFO     | architecture information:
[2026-03-09 21:27:48] 2026-03-09 20:27:17,939 | INFO     | executing command: cat /etc/os-release
[2026-03-09 21:27:48] 2026-03-09 20:27:17,947 | INFO     | cat /etc/os-release:
[2026-03-09 21:27:48] NAME="CentOS Linux"
[2026-03-09 21:27:48] VERSION="7 (Core)"
[2026-03-09 21:27:48] ID="centos"
[2026-03-09 21:27:48] ID_LIKE="rhel fedora"
[2026-03-09 21:27:48] VERSION_ID="7"
[2026-03-09 21:27:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-09 21:27:48] ANSI_COLOR="0;31"
[2026-03-09 21:27:48] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-09 21:27:48] HOME_URL="https://www.centos.org/"
[2026-03-09 21:27:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-09 21:27:48] 
[2026-03-09 21:27:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-09 21:27:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-09 21:27:48] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-09 21:27:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-09 21:27:48] 
[2026-03-09 21:27:48] 2026-03-09 20:27:17,947 | INFO     | **************************************
[2026-03-09 21:27:48] 2026-03-09 20:27:18,451 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-09 21:27:48] 2026-03-09 20:27:18,461 | INFO     | sufficient remaining disk space (182537158656 B)
[2026-03-09 21:27:48] 2026-03-09 20:27:18,461 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-09 21:27:48] 2026-03-09 20:27:18,461 | INFO     | current server update state: UPDATING_FINAL
[2026-03-09 21:27:48] 2026-03-09 20:27:18,461 | INFO     | update_server=False
[2026-03-09 21:27:48] 2026-03-09 20:27:18,461 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-09 21:27:48] 2026-03-09 20:27:18,461 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-09 21:27:48] 2026-03-09 20:27:18,461 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-09 21:27:48] 2026-03-09 20:27:18,461 | INFO     | aborting loop
[2026-03-09 21:27:48] 2026-03-09 20:27:18,914 | INFO     | all payload control threads have been joined
[2026-03-09 21:27:48] 2026-03-09 20:27:19,075 | INFO     | all data control threads have been joined
[2026-03-09 21:27:48] 2026-03-09 20:27:19,466 | INFO     | [job] retrieve thread has finished
[2026-03-09 21:27:48] 2026-03-09 20:27:19,467 | INFO     | [job] queue monitor thread has finished
[2026-03-09 21:27:48] 2026-03-09 20:27:19,467 | INFO     | [job] job monitor thread has finished
[2026-03-09 21:27:48] 2026-03-09 20:27:19,476 | INFO     | [job] create_data_payload thread has finished
[2026-03-09 21:27:48] 2026-03-09 20:27:19,483 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-09 21:27:48] 2026-03-09 20:27:19,490 | INFO     | [data] copytool_in thread has finished
[2026-03-09 21:27:48] 2026-03-09 20:27:19,555 | INFO     | job.realtimelogging is not enabled
[2026-03-09 21:27:48] 2026-03-09 20:27:19,826 | INFO     | all job control threads have been joined
[2026-03-09 21:27:48] 2026-03-09 20:27:19,875 | INFO     | [payload] failed_post thread has finished
[2026-03-09 21:27:48] 2026-03-09 20:27:19,920 | INFO     | [payload] control thread has finished
[2026-03-09 21:27:48] 2026-03-09 20:27:20,081 | INFO     | [data] control thread has finished
[2026-03-09 21:27:48] 2026-03-09 20:27:20,330 | INFO     | [payload] execute_payloads thread has finished
[2026-03-09 21:27:48] 2026-03-09 20:27:20,561 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-09 21:27:48] 2026-03-09 20:27:20,758 | INFO     | [payload] validate_post thread has finished
[2026-03-09 21:27:48] 2026-03-09 20:27:20,822 | INFO     | [job] validate thread has finished
[2026-03-09 21:27:48] 2026-03-09 20:27:20,832 | INFO     | [job] control thread has finished
[2026-03-09 21:27:48] 2026-03-09 20:27:20,938 | INFO     | [payload] validate_pre thread has finished
[2026-03-09 21:27:48] 2026-03-09 20:27:21,489 | INFO     | [data] copytool_out thread has finished
[2026-03-09 21:27:48] 2026-03-09 20:27:21,901 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-09 21:27:48] 2026-03-09 20:27:25,908 | INFO     | [data] queue_monitor thread has finished
[2026-03-09 21:27:48] 2026-03-09 20:27:34,389 | INFO     | [monitor] cgroup control has ended
[2026-03-09 21:27:48] 2026-03-09 20:27:36,350 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140483125028672)>', '<ExcThread(monitor, started 140482256557824)>']
[2026-03-09 21:27:48] 2026-03-09 20:27:41,377 | INFO     | all workflow threads have been joined
[2026-03-09 21:27:48] 2026-03-09 20:27:41,378 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-09 21:27:48] 2026-03-09 20:27:41,379 | INFO     | traces error code: 0
[2026-03-09 21:27:48] 2026-03-09 20:27:41,379 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-09 21:27:48] 2026-03-09 20:27:48,616 | INFO     | PID=1660062 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-09 21:27:48] 2026-03-09 20:27:48,616 | INFO     | found 0 job(s) in 20 queues
[2026-03-09 21:27:48] 2026-03-09 20:27:48,616 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-09 21:27:48] 2026-03-09 20:27:48,616 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-09 21:27:48] 2026-03-09 20:27:48,616 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-09 21:27:48] 2026-03-09 20:27:48,616 | INFO     | [monitor] control thread has ended
[2026-03-09 21:27:48] 2026-03-09 20:27:48,654 [wrapper] ==== pilot stdout END ====
[2026-03-09 21:27:48] 2026-03-09 20:27:48,656 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-09 21:27:48] 2026-03-09 20:27:48,658 [wrapper] pilotpid: 1660062
[2026-03-09 21:27:48] 2026-03-09 20:27:48,660 [wrapper] Pilot exit status: 0
[2026-03-09 21:27:48] 2026-03-09 20:27:48,667 [wrapper] pandaids: 7034331578
[2026-03-09 21:27:48] 2026-03-09 20:27:48,678 [wrapper] cleanup supervisor_pilot 1669401 1660063
[2026-03-09 21:27:48] 2026-03-09 20:27:48,680 [wrapper] Test setup, not cleaning
[2026-03-09 21:27:48] 2026-03-09 20:27:48,682 [wrapper] apfmon messages muted
[2026-03-09 21:27:48] 2026-03-09 20:27:48,684 [wrapper] ==== wrapper stdout END ====
[2026-03-09 21:27:48] 2026-03-09 20:27:48,686 [wrapper] ==== wrapper stderr END ====
[2026-03-09 21:27:48]  *** Error codes and diagnostics ***
[2026-03-09 21:27:48]     "exeErrorCode": 0,
[2026-03-09 21:27:48]     "exeErrorDiag": "",
[2026-03-09 21:27:48]     "pilotErrorCode": 0,
[2026-03-09 21:27:48]     "pilotErrorDiag": "",
[2026-03-09 21:27:48]  *** Listing of results directory ***
[2026-03-09 21:27:48] total 331232
[2026-03-09 21:27:48] -rw-r--r-- 1 boinc boinc    584627 Mar  1 05:23 pilot3.tar.gz
[2026-03-09 21:27:48] -rwx------ 1 boinc boinc     36322 Mar  1 05:23 runpilot2-wrapper.sh
[2026-03-09 21:27:48] -rw-r--r-- 1 boinc boinc      5111 Mar  1 05:24 queuedata.json
[2026-03-09 21:27:48] -rw-r--r-- 1 boinc boinc       100 Mar  9 19:52 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-09 21:27:48] -rwxr-xr-x 1 boinc boinc      7986 Mar  9 19:52 run_atlas
[2026-03-09 21:27:48] -rw-r--r-- 1 boinc boinc       105 Mar  9 19:52 job.xml
[2026-03-09 21:27:48] -rw-r--r-- 2 boinc boinc 188637475 Mar  9 19:52 EVNT.48700904._000046.pool.root.1
[2026-03-09 21:27:48] -rw-r--r-- 2 boinc boinc    597938 Mar  9 19:52 input.tar.gz
[2026-03-09 21:27:48] -rw-r--r-- 2 boinc boinc     15845 Mar  9 19:52 start_atlas.sh
[2026-03-09 21:27:48] drwxrwx--x 2 boinc boinc      4096 Mar  9 19:52 shared
[2026-03-09 21:27:48] -rw-r--r-- 1 boinc boinc         0 Mar  9 19:52 boinc_setup_complete
[2026-03-09 21:27:48] -rw-r--r-- 1 boinc boinc      6209 Mar  9 19:52 init_data.xml
[2026-03-09 21:27:48] -rw-r--r-- 1 boinc boinc         0 Mar  9 19:52 boinc_lockfile
[2026-03-09 21:27:48] -rw-r--r-- 1 boinc boinc      2519 Mar  9 19:52 pandaJob.out
[2026-03-09 21:27:48] -rw------- 1 boinc boinc   1002738 Mar  9 19:52 agis_schedconf.cvmfs.json
[2026-03-09 21:27:48] -rw------- 1 boinc boinc   1511578 Mar  9 19:52 agis_ddmendpoints.agis.ALL.json
[2026-03-09 21:27:48] -rw------- 1 boinc boinc       423 Mar  9 19:52 workernode_map.json
[2026-03-09 21:27:48] drwx------ 5 boinc boinc      4096 Mar  9 19:52 pilot3
[2026-03-09 21:27:48] -rw------- 1 boinc boinc 144455613 Mar  9 21:26 HITS.48700906._001146.pool.root.1
[2026-03-09 21:27:48] -rw------- 1 boinc boinc        95 Mar  9 21:27 pilot_heartbeat.json
[2026-03-09 21:27:48] -rw-r--r-- 1 boinc boinc       529 Mar  9 21:27 boinc_task_state.xml
[2026-03-09 21:27:48] -rw------- 1 boinc boinc      1013 Mar  9 21:27 memory_monitor_summary.json
[2026-03-09 21:27:48] -rw------- 1 boinc boinc    258203 Mar  9 21:27 log.48700906._001146.job.log.tgz.1
[2026-03-09 21:27:48] -rw------- 1 boinc boinc      6299 Mar  9 21:27 heartbeat.json
[2026-03-09 21:27:48] -rw-r--r-- 1 boinc boinc      8192 Mar  9 21:27 boinc_mmap_file
[2026-03-09 21:27:48] -rw-r--r-- 1 boinc boinc        27 Mar  9 21:27 wrapper_checkpoint.txt
[2026-03-09 21:27:48] -rw------- 1 boinc boinc       747 Mar  9 21:27 pilotlog.txt
[2026-03-09 21:27:48] -rw------- 1 boinc boinc    826704 Mar  9 21:27 log.48700906._001146.job.log.1
[2026-03-09 21:27:48] -rw------- 1 boinc boinc       357 Mar  9 21:27 output.list
[2026-03-09 21:27:48] -rw-r--r-- 1 boinc boinc       620 Mar  9 21:27 runtime_log
[2026-03-09 21:27:48] -rw------- 1 boinc boinc   1105920 Mar  9 21:27 result.tar.gz
[2026-03-09 21:27:48] -rw-r--r-- 1 boinc boinc      8916 Mar  9 21:27 runtime_log.err
[2026-03-09 21:27:48] -rw------- 1 boinc boinc       661 Mar  9 21:27 eL8MDmKWnG9n9Rq4apOajLDm4fhM0noT9bVooX4SDmP36KDmKT6bdn.diag
[2026-03-09 21:27:48] -rw-r--r-- 1 boinc boinc     11512 Mar  9 21:27 stderr.txt
[2026-03-09 21:27:48] HITS file was successfully produced:
[2026-03-09 21:27:48] -rw------- 1 boinc boinc 144455613 Mar  9 21:26 shared/HITS.pool.root.1
[2026-03-09 21:27:48]  *** Contents of shared directory: ***
[2026-03-09 21:27:48] total 326976
[2026-03-09 21:27:48] -rw-r--r-- 2 boinc boinc 188637475 Mar  9 19:52 ATLAS.root_0
[2026-03-09 21:27:48] -rw-r--r-- 2 boinc boinc    597938 Mar  9 19:52 input.tar.gz
[2026-03-09 21:27:48] -rw-r--r-- 2 boinc boinc     15845 Mar  9 19:52 start_atlas.sh
[2026-03-09 21:27:48] -rw------- 1 boinc boinc 144455613 Mar  9 21:26 HITS.pool.root.1
[2026-03-09 21:27:48] -rw------- 1 boinc boinc   1105920 Mar  9 21:27 result.tar.gz
21:27:49 (1656037): run_atlas exited; CPU time 10953.182836
21:27:49 (1656037): called boinc_finish(0)

</stderr_txt>
]]>

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