Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:29:02 (2323647): wrapper (7.7.26015): starting
08:29:02 (2323647): wrapper: running run_atlas (--nthreads 4)
[2026-03-10 08:29:02] Arguments: --nthreads 4
[2026-03-10 08:29:02] Threads: 4
[2026-03-10 08:29:02] Checking for CVMFS
[2026-03-10 08:29:02] No cvmfs_config command found, will try listing directly
[2026-03-10 08:29:02] CVMFS is ok
[2026-03-10 08:29:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-10 08:29:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-10 08:29:02] Further information can be found at the LHC@home message board.
[2026-03-10 08:29:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-10 08:29:02] Checking for apptainer binary...
[2026-03-10 08:29:02] which: no apptainer in ((null))
[2026-03-10 08:29:02] apptainer is not installed, using version from CVMFS
[2026-03-10 08:29:02] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-10 08:29:03] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot248/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut23.grid.cesnet.cz
[2026-03-10 08:29:03] apptainer works
[2026-03-10 08:29:03] Set ATHENA_PROC_NUMBER=4
[2026-03-10 08:29:03] Set ATHENA_CORE_NUMBER=4
[2026-03-10 08:29:03] Starting ATLAS job with PandaID=7040546276
[2026-03-10 08:29:03] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot248/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-10 09:46:29]  *** The last 200 lines of the pilot log: ***
[2026-03-10 09:46:29]  filesize=254004
[2026-03-10 09:46:29]  filetype=log
[2026-03-10 09:46:29]  guid=77ad88a6-aef0-4003-8242-15ceffc69c98
[2026-03-10 09:46:29]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-10 09:46:29]  is_altstaged=None
[2026-03-10 09:46:29]  is_tar=False
[2026-03-10 09:46:29]  lfn=log.48955010._016334.job.log.tgz.1
[2026-03-10 09:46:29]  mtime=0
[2026-03-10 09:46:29]  protocol_id=None
[2026-03-10 09:46:29]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-10 09:46:29]  replicas=None
[2026-03-10 09:46:29]  scope=mc23_13p6TeV
[2026-03-10 09:46:29]  status=None
[2026-03-10 09:46:29]  status_code=0
[2026-03-10 09:46:29]  storage_token=
[2026-03-10 09:46:29]  surl=/var/lib/boinc/var/slot248/slots/0/PanDA_Pilot-7040546276/log.48955010._016334.job.log.tgz.1
[2026-03-10 09:46:29]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/94/6c/log.48955010._016334.job.log.tgz.1
[2026-03-10 09:46:29]  workdir=None
[2026-03-10 09:46:29] ]
[2026-03-10 09:46:29] 2026-03-10 08:45:30,996 | INFO     | transferring file log.48955010._016334.job.log.tgz.1 from /var/lib/boinc/var/slot248/slots/0/PanDA_Pilot-7040546276/log.48955010._016334.job.log.tgz.1 to /var/lib/
[2026-03-10 09:46:29] 2026-03-10 08:45:30,996 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot248/slots/0/PanDA_Pilot-7040546276/log.48955010._016334.job.log.tgz.1 /var/lib/boinc/var/slot248/slots/0/
[2026-03-10 09:46:29] 2026-03-10 08:45:31,016 | INFO     | adding to output.list: log.48955010._016334.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/94/6c/log.48955010._016334.job.log.tg
[2026-03-10 09:46:29] 2026-03-10 08:45:31,017 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-10 09:46:29] 2026-03-10 08:45:31,017 | INFO     | summary of transferred files:
[2026-03-10 09:46:29] 2026-03-10 08:45:31,017 | INFO     |  -- lfn=log.48955010._016334.job.log.tgz.1, status_code=0, status=transferred
[2026-03-10 09:46:29] 2026-03-10 08:45:31,017 | INFO     | stage-out finished correctly
[2026-03-10 09:46:29] 2026-03-10 08:45:31,093 | INFO     | time since job start (4576s) is within the limit (349056.0s)
[2026-03-10 09:46:29] 2026-03-10 08:45:31,094 | INFO     | 4580s have passed since pilot start - server update state is 'RUNNING'
[2026-03-10 09:46:29] 2026-03-10 08:45:32,053 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-10 09:46:29] 2026-03-10 08:45:32,100 | INFO     | job 7040546276 has state=finished
[2026-03-10 09:46:29] 2026-03-10 08:45:32,100 | INFO     | preparing for final server update for job 7040546276 in state='finished'
[2026-03-10 09:46:29] 2026-03-10 08:45:32,100 | INFO     | reading metadata from: /var/lib/boinc/var/slot248/slots/0/PanDA_Pilot-7040546276/jobReport.json
[2026-03-10 09:46:29] 2026-03-10 08:45:32,102 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot248/slots/0/workernode_map.json
[2026-03-10 09:46:29] 2026-03-10 08:45:32,102 | INFO     | this job has now completed (state=finished)
[2026-03-10 09:46:29] 2026-03-10 08:45:32,102 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-10 09:46:29] 2026-03-10 08:45:32,102 | INFO     | log transfer has been attempted: DONE
[2026-03-10 09:46:29] 2026-03-10 08:45:32,102 | INFO     | job 7040546276 has finished - writing final server update
[2026-03-10 09:46:29] 2026-03-10 08:45:32,102 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_60125/.job.ad'
[2026-03-10 09:46:29] 2026-03-10 08:45:32,102 | INFO     | total number of processed events: 400 (read)
[2026-03-10 09:46:29] 2026-03-10 08:45:32,120 | INFO     | using path: /var/lib/boinc/var/slot248/slots/0/PanDA_Pilot-7040546276/memory_monitor_summary.json (trf name=prmon)
[2026-03-10 09:46:29] 2026-03-10 08:45:32,120 | INFO     | extracted standard info from prmon json
[2026-03-10 09:46:29] 2026-03-10 08:45:32,120 | INFO     | extracted standard memory fields from prmon json
[2026-03-10 09:46:29] 2026-03-10 08:45:32,120 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-10 09:46:29] 2026-03-10 08:45:32,120 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-10 09:46:29] 2026-03-10 08:45:32,121 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-10 09:46:29] 2026-03-10 08:45:32,122 | INFO     | fitting pss+swap vs Time
[2026-03-10 09:46:29] 2026-03-10 08:45:32,122 | INFO     | sum of square deviations: 97479037.0
[2026-03-10 09:46:29] 2026-03-10 08:45:32,122 | INFO     | sum of deviations: -111290260.50000001
[2026-03-10 09:46:29] 2026-03-10 08:45:32,122 | INFO     | mean x: 1773130125.5
[2026-03-10 09:46:29] 2026-03-10 08:45:32,122 | INFO     | mean y: 2337997.8970588236
[2026-03-10 09:46:29] 2026-03-10 08:45:32,122 | INFO     | intersect: 2026692357.9764748
[2026-03-10 09:46:29] 2026-03-10 08:45:32,122 | INFO     | chi2: 0.00041892271143485277
[2026-03-10 09:46:29] 2026-03-10 08:45:32,122 | INFO     | current memory leak: -1.14 B/s (using 68 data points, chi2=0.00)
[2026-03-10 09:46:29] 2026-03-10 08:45:32,122 | INFO     | could have reported an average CPU frequency of 3556 MHz (6 samples)
[2026-03-10 09:46:29] 2026-03-10 08:45:32,122 | INFO     | ..............................
[2026-03-10 09:46:29] 2026-03-10 08:45:32,122 | INFO     | . Timing measurements:
[2026-03-10 09:46:29] 2026-03-10 08:45:32,122 | INFO     | . get job = 0 s
[2026-03-10 09:46:29] 2026-03-10 08:45:32,122 | INFO     | . initial setup = 5 s
[2026-03-10 09:46:29] 2026-03-10 08:45:32,122 | INFO     | . payload setup = 5 s
[2026-03-10 09:46:29] 2026-03-10 08:45:32,122 | INFO     | . stage-in = 0 s
[2026-03-10 09:46:29] 2026-03-10 08:45:32,123 | INFO     | . payload execution = 4553 s
[2026-03-10 09:46:29] 2026-03-10 08:45:32,123 | INFO     | . stage-out = 0 s
[2026-03-10 09:46:29] 2026-03-10 08:45:32,123 | INFO     | . log creation = 0 s
[2026-03-10 09:46:29] 2026-03-10 08:45:32,123 | INFO     | ..............................
[2026-03-10 09:46:29] 2026-03-10 08:45:32,170 | INFO     | 
[2026-03-10 09:46:29] 2026-03-10 08:45:32,170 | INFO     | job summary report
[2026-03-10 09:46:29] 2026-03-10 08:45:32,170 | INFO     | --------------------------------------------------
[2026-03-10 09:46:29] 2026-03-10 08:45:32,170 | INFO     | PanDA job id: 7040546276
[2026-03-10 09:46:29] 2026-03-10 08:45:32,170 | INFO     | task id: 48955010
[2026-03-10 09:46:29] 2026-03-10 08:45:32,170 | INFO     | errors: (none)
[2026-03-10 09:46:29] 2026-03-10 08:45:32,171 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-10 09:46:29] 2026-03-10 08:45:32,171 | INFO     | pilot state: finished 
[2026-03-10 09:46:29] 2026-03-10 08:45:32,171 | INFO     | transexitcode: 0
[2026-03-10 09:46:29] 2026-03-10 08:45:32,171 | INFO     | exeerrorcode: 0
[2026-03-10 09:46:29] 2026-03-10 08:45:32,171 | INFO     | exeerrordiag: 
[2026-03-10 09:46:29] 2026-03-10 08:45:32,171 | INFO     | exitcode: 0
[2026-03-10 09:46:29] 2026-03-10 08:45:32,171 | INFO     | exitmsg: OK
[2026-03-10 09:46:29] 2026-03-10 08:45:32,171 | INFO     | cpuconsumptiontime: 17290 s
[2026-03-10 09:46:29] 2026-03-10 08:45:32,171 | INFO     | nevents: 400
[2026-03-10 09:46:29] 2026-03-10 08:45:32,171 | INFO     | neventsw: 0
[2026-03-10 09:46:29] 2026-03-10 08:45:32,171 | INFO     | pid: 2333949
[2026-03-10 09:46:29] 2026-03-10 08:45:32,171 | INFO     | pgrp: 2333949
[2026-03-10 09:46:29] 2026-03-10 08:45:32,171 | INFO     | corecount: 4
[2026-03-10 09:46:29] 2026-03-10 08:45:32,171 | INFO     | event service: False
[2026-03-10 09:46:29] 2026-03-10 08:45:32,171 | INFO     | sizes: {0: 2279756, 1: 2280217, 11: 2280217, 4563: 2306418, 4565: 2315440, 4566: 2315818}
[2026-03-10 09:46:29] 2026-03-10 08:45:32,171 | INFO     | --------------------------------------------------
[2026-03-10 09:46:29] 2026-03-10 08:45:32,171 | INFO     | 
[2026-03-10 09:46:29] 2026-03-10 08:45:32,171 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot248/slots/0
[2026-03-10 09:46:29] 2026-03-10 08:45:32,190 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-10 09:46:29] 2026-03-10 08:45:32,191 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-10 09:46:29] 2026-03-10 08:45:32,191 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-10 09:46:29] 2026-03-10 08:45:32,191 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-10 09:46:29] 2026-03-10 08:45:32,191 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-10 09:46:29] 2026-03-10 08:45:32,191 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-10 09:46:29] 2026-03-10 08:45:32,191 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-10 09:46:29] 2026-03-10 08:45:32,191 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-10 09:46:29] 2026-03-10 08:45:32,191 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-10 09:46:29] 2026-03-10 08:45:32,191 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-10 09:46:29] 2026-03-10 08:45:32,191 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-10 09:46:29] 2026-03-10 08:45:32,191 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-10 09:46:29] 2026-03-10 08:45:32,191 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-10 09:46:29] 2026-03-10 08:45:32,191 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-10 09:46:29] 2026-03-10 08:45:32,191 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-10 09:46:29] 2026-03-10 08:45:32,191 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-10 09:46:29] 2026-03-10 08:45:32,191 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-10 09:46:29] 2026-03-10 08:45:32,191 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-10 09:46:29] 2026-03-10 08:45:32,191 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-10 09:46:29] 2026-03-10 08:45:32,191 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-10 09:46:29] 2026-03-10 08:45:32,191 | INFO     | job 7040546276 has completed (purged errors)
[2026-03-10 09:46:29] 2026-03-10 08:45:32,191 | INFO     | overall cleanup function is called
[2026-03-10 09:46:29] 2026-03-10 08:45:33,198 | INFO     | --- collectZombieJob: --- 10, [2333949]
[2026-03-10 09:46:29] 2026-03-10 08:45:33,199 | INFO     | zombie collector waiting for pid 2333949
[2026-03-10 09:46:29] 2026-03-10 08:45:33,199 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-10 09:46:29] 2026-03-10 08:45:33,199 | INFO     | collected zombie processes
[2026-03-10 09:46:29] 2026-03-10 08:45:33,199 | INFO     | will attempt to kill all subprocesses of pid=2333949
[2026-03-10 09:46:29] 2026-03-10 08:45:33,629 | INFO     | process IDs to be killed: [2333949] (in reverse order)
[2026-03-10 09:46:29] 2026-03-10 08:45:33,841 | WARNING  | found no corresponding commands to process id(s)
[2026-03-10 09:46:29] 2026-03-10 08:45:33,841 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-10 09:46:29] 2026-03-10 08:45:33,868 | INFO     | did not find any defunct processes belonging to 2333949
[2026-03-10 09:46:29] 2026-03-10 08:45:33,897 | INFO     | did not find any defunct processes belonging to 2333949
[2026-03-10 09:46:29] 2026-03-10 08:45:33,897 | INFO     | ready for new job
[2026-03-10 09:46:29] 2026-03-10 08:45:33,897 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-10 09:46:29] 2026-03-10 08:45:33,898 | INFO     | **************************************
[2026-03-10 09:46:29] 2026-03-10 08:45:33,898 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-10 09:46:29] 2026-03-10 08:45:33,898 | INFO     | **************************************
[2026-03-10 09:46:29] 2026-03-10 08:45:33,898 | INFO     | 
[2026-03-10 09:46:29] 2026-03-10 08:45:33,905 | INFO     | architecture information:
[2026-03-10 09:46:29] 2026-03-10 08:45:33,905 | INFO     | executing command: cat /etc/os-release
[2026-03-10 09:46:29] 2026-03-10 08:45:33,919 | INFO     | cat /etc/os-release:
[2026-03-10 09:46:29] NAME="CentOS Linux"
[2026-03-10 09:46:29] VERSION="7 (Core)"
[2026-03-10 09:46:29] ID="centos"
[2026-03-10 09:46:29] ID_LIKE="rhel fedora"
[2026-03-10 09:46:29] VERSION_ID="7"
[2026-03-10 09:46:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-10 09:46:29] ANSI_COLOR="0;31"
[2026-03-10 09:46:29] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-10 09:46:29] HOME_URL="https://www.centos.org/"
[2026-03-10 09:46:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-10 09:46:29] 
[2026-03-10 09:46:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-10 09:46:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-10 09:46:29] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-10 09:46:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-10 09:46:29] 
[2026-03-10 09:46:29] 2026-03-10 08:45:33,920 | INFO     | **************************************
[2026-03-10 09:46:29] 2026-03-10 08:45:34,422 | INFO     | executing command: df -mP /var/lib/boinc/var/slot248/slots/0
[2026-03-10 09:46:29] 2026-03-10 08:45:34,436 | INFO     | sufficient remaining disk space (20770193408 B)
[2026-03-10 09:46:29] 2026-03-10 08:45:34,437 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-10 09:46:29] 2026-03-10 08:45:34,437 | INFO     | current server update state: UPDATING_FINAL
[2026-03-10 09:46:29] 2026-03-10 08:45:34,437 | INFO     | update_server=False
[2026-03-10 09:46:29] 2026-03-10 08:45:34,437 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-10 09:46:29] 2026-03-10 08:45:34,437 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-10 09:46:29] 2026-03-10 08:45:34,437 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-10 09:46:29] 2026-03-10 08:45:34,437 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-10 09:46:29] 2026-03-10 08:45:34,438 | INFO     | aborting loop
[2026-03-10 09:46:29] 2026-03-10 08:45:34,471 | INFO     | all payload control threads have been joined
[2026-03-10 09:46:29] 2026-03-10 08:45:34,760 | INFO     | all data control threads have been joined
[2026-03-10 09:46:29] 2026-03-10 08:45:35,441 | INFO     | [job] retrieve thread has finished
[2026-03-10 09:46:29] 2026-03-10 08:45:35,443 | INFO     | [job] job monitor thread has finished
[2026-03-10 09:46:29] 2026-03-10 08:45:35,476 | INFO     | [payload] control thread has finished
[2026-03-10 09:46:29] 2026-03-10 08:45:35,625 | INFO     | job.realtimelogging is not enabled
[2026-03-10 09:46:29] 2026-03-10 08:45:35,766 | INFO     | [data] control thread has finished
[2026-03-10 09:46:29] 2026-03-10 08:45:35,956 | INFO     | [job] validate thread has finished
[2026-03-10 09:46:29] 2026-03-10 08:45:36,105 | INFO     | all job control threads have been joined
[2026-03-10 09:46:29] 2026-03-10 08:45:36,177 | INFO     | [payload] execute_payloads thread has finished
[2026-03-10 09:46:29] 2026-03-10 08:45:36,189 | INFO     | [job] create_data_payload thread has finished
[2026-03-10 09:46:29] 2026-03-10 08:45:36,322 | INFO     | [payload] validate_pre thread has finished
[2026-03-10 09:46:29] 2026-03-10 08:45:36,442 | INFO     | [data] copytool_out thread has finished
[2026-03-10 09:46:29] 2026-03-10 08:45:36,461 | INFO     | [data] copytool_in thread has finished
[2026-03-10 09:46:29] 2026-03-10 08:45:36,623 | INFO     | [payload] validate_post thread has finished
[2026-03-10 09:46:29] 2026-03-10 08:45:36,630 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-10 09:46:29] 2026-03-10 08:45:36,878 | INFO     | [payload] failed_post thread has finished
[2026-03-10 09:46:29] 2026-03-10 08:45:37,110 | INFO     | [job] control thread has finished
[2026-03-10 09:46:29] 2026-03-10 08:45:37,179 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-10 09:46:29] 2026-03-10 08:45:38,184 | INFO     | [job] queue monitor thread has finished
[2026-03-10 09:46:29] 2026-03-10 08:45:38,443 | INFO     | [data] queue_monitor thread has finished
[2026-03-10 09:46:29] 2026-03-10 08:46:04,626 | INFO     | PID=2328173 has CPU usage=6.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-10 09:46:29] 2026-03-10 08:46:04,629 | INFO     | .. there are 59 such processes running
[2026-03-10 09:46:29] 2026-03-10 08:46:04,630 | INFO     | found 0 job(s) in 20 queues
[2026-03-10 09:46:29] 2026-03-10 08:46:04,630 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-10 09:46:29] 2026-03-10 08:46:04,630 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-10 09:46:29] 2026-03-10 08:46:22,743 | INFO     | [monitor] cgroup control has ended
[2026-03-10 09:46:29] 2026-03-10 08:46:23,964 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23045037909824)>', '<ExcThread(monitor, started 23044795143936)>']
[2026-03-10 09:46:29] 2026-03-10 08:46:24,730 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-10 09:46:29] 2026-03-10 08:46:24,730 | INFO     | [monitor] control thread has ended
[2026-03-10 09:46:29] 2026-03-10 08:46:28,989 | INFO     | all workflow threads have been joined
[2026-03-10 09:46:29] 2026-03-10 08:46:28,990 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-10 09:46:29] 2026-03-10 08:46:28,990 | INFO     | traces error code: 0
[2026-03-10 09:46:29] 2026-03-10 08:46:28,990 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-10 09:46:29] 2026-03-10 08:46:29,107 [wrapper] ==== pilot stdout END ====
[2026-03-10 09:46:29] 2026-03-10 08:46:29,110 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-10 09:46:29] 2026-03-10 08:46:29,112 [wrapper] pilotpid: 2328173
[2026-03-10 09:46:29] 2026-03-10 08:46:29,115 [wrapper] Pilot exit status: 0
[2026-03-10 09:46:29] 2026-03-10 08:46:29,125 [wrapper] pandaids: 7040546276
[2026-03-10 09:46:29] 2026-03-10 08:46:29,230 [wrapper] cleanup supervisor_pilot 3149532 2328174
[2026-03-10 09:46:29] 2026-03-10 08:46:29,233 [wrapper] Test setup, not cleaning
[2026-03-10 09:46:29] 2026-03-10 08:46:29,235 [wrapper] apfmon messages muted
[2026-03-10 09:46:29] 2026-03-10 08:46:29,237 [wrapper] ==== wrapper stdout END ====
[2026-03-10 09:46:29] 2026-03-10 08:46:29,238 [wrapper] ==== wrapper stderr END ====
[2026-03-10 09:46:29]  *** Error codes and diagnostics ***
[2026-03-10 09:46:29]     "exeErrorCode": 0,
[2026-03-10 09:46:29]     "exeErrorDiag": "",
[2026-03-10 09:46:29]     "pilotErrorCode": 0,
[2026-03-10 09:46:29]     "pilotErrorDiag": "",
[2026-03-10 09:46:29]  *** Listing of results directory ***
[2026-03-10 09:46:29] total 605444
[2026-03-10 09:46:29] -rw-r--r--. 1 boinc boinc    584627 Mar  9 06:55 pilot3.tar.gz
[2026-03-10 09:46:29] -rwx------. 1 boinc boinc     36322 Mar  9 06:59 runpilot2-wrapper.sh
[2026-03-10 09:46:29] -rw-r--r--. 1 boinc boinc      5111 Mar  9 07:01 queuedata.json
[2026-03-10 09:46:29] -rw-r--r--. 1 boinc boinc       100 Mar 10 08:28 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-10 09:46:29] -rwxr-xr-x. 1 boinc boinc      7986 Mar 10 08:28 run_atlas
[2026-03-10 09:46:29] -rw-r--r--. 1 boinc boinc       105 Mar 10 08:28 job.xml
[2026-03-10 09:46:29] -rw-r--r--. 2 boinc boinc 442795870 Mar 10 08:29 EVNT.46701403._001327.pool.root.1
[2026-03-10 09:46:29] -rw-r--r--. 1 boinc boinc      6707 Mar 10 08:29 init_data.xml
[2026-03-10 09:46:29] -rw-r--r--. 2 boinc boinc     15845 Mar 10 08:29 start_atlas.sh
[2026-03-10 09:46:29] drwxrwx--x. 2 boinc boinc      4096 Mar 10 08:29 shared
[2026-03-10 09:46:29] -rw-r--r--. 2 boinc boinc    597961 Mar 10 08:29 input.tar.gz
[2026-03-10 09:46:29] -rw-r--r--. 1 boinc boinc         0 Mar 10 08:29 boinc_lockfile
[2026-03-10 09:46:29] -rw-r--r--. 1 boinc boinc      2562 Mar 10 08:29 pandaJob.out
[2026-03-10 09:46:29] -rw-------. 1 boinc boinc   1005057 Mar 10 08:29 agis_schedconf.cvmfs.json
[2026-03-10 09:46:29] -rw-------. 1 boinc boinc   1511578 Mar 10 08:29 agis_ddmendpoints.agis.ALL.json
[2026-03-10 09:46:29] -rw-------. 1 boinc boinc       444 Mar 10 08:29 workernode_map.json
[2026-03-10 09:46:29] drwx------. 5 boinc boinc      4096 Mar 10 08:29 pilot3
[2026-03-10 09:46:29] -rw-------. 1 boinc boinc 171386875 Mar 10 09:45 HITS.48955010._016334.pool.root.1
[2026-03-10 09:46:29] -rw-r--r--. 1 boinc boinc       530 Mar 10 09:45 boinc_task_state.xml
[2026-03-10 09:46:29] -rw-------. 1 boinc boinc      1028 Mar 10 09:45 memory_monitor_summary.json
[2026-03-10 09:46:29] -rw-------. 1 boinc boinc    254004 Mar 10 09:45 log.48955010._016334.job.log.tgz.1
[2026-03-10 09:46:29] -rw-------. 1 boinc boinc      6370 Mar 10 09:45 heartbeat.json
[2026-03-10 09:46:29] -rw-------. 1 boinc boinc        95 Mar 10 09:46 pilot_heartbeat.json
[2026-03-10 09:46:29] -rw-r--r--. 1 boinc boinc      8192 Mar 10 09:46 boinc_mmap_file
[2026-03-10 09:46:29] -rw-r--r--. 1 boinc boinc        27 Mar 10 09:46 wrapper_checkpoint.txt
[2026-03-10 09:46:29] -rw-------. 1 boinc boinc      4902 Mar 10 09:46 pilotlog.txt
[2026-03-10 09:46:29] -rw-------. 1 boinc boinc    673655 Mar 10 09:46 log.48955010._016334.job.log.1
[2026-03-10 09:46:29] -rw-------. 1 boinc boinc       357 Mar 10 09:46 output.list
[2026-03-10 09:46:29] -rw-r--r--. 1 boinc boinc       620 Mar 10 09:46 runtime_log
[2026-03-10 09:46:29] -rw-------. 1 boinc boinc    942080 Mar 10 09:46 result.tar.gz
[2026-03-10 09:46:29] -rw-r--r--. 1 boinc boinc      9221 Mar 10 09:46 runtime_log.err
[2026-03-10 09:46:29] -rw-------. 1 boinc boinc       661 Mar 10 09:46 EB6KDmIpiJ9n9Rq4apOajLDm4fhM0noT9bVooX4SDmt3YLDmx1ap7m.diag
[2026-03-10 09:46:29] -rw-r--r--. 1 boinc boinc     21065 Mar 10 09:46 stderr.txt
[2026-03-10 09:46:29] HITS file was successfully produced:
[2026-03-10 09:46:29] -rw-------. 1 boinc boinc 171386875 Mar 10 09:45 shared/HITS.pool.root.1
[2026-03-10 09:46:29]  *** Contents of shared directory: ***
[2026-03-10 09:46:29] total 601320
[2026-03-10 09:46:29] -rw-r--r--. 2 boinc boinc 442795870 Mar 10 08:29 ATLAS.root_0
[2026-03-10 09:46:29] -rw-r--r--. 2 boinc boinc     15845 Mar 10 08:29 start_atlas.sh
[2026-03-10 09:46:29] -rw-r--r--. 2 boinc boinc    597961 Mar 10 08:29 input.tar.gz
[2026-03-10 09:46:29] -rw-------. 1 boinc boinc 171386875 Mar 10 09:45 HITS.pool.root.1
[2026-03-10 09:46:29] -rw-------. 1 boinc boinc    942080 Mar 10 09:46 result.tar.gz
09:46:30 (2323647): run_atlas exited; CPU time 17483.728955
09:46:30 (2323647): called boinc_finish(0)

</stderr_txt>
]]>

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