Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:19:21 (2907304): wrapper (7.7.26015): starting
03:19:21 (2907304): wrapper: running run_atlas (--nthreads 4)
[2026-03-10 03:19:21] Arguments: --nthreads 4
[2026-03-10 03:19:21] Threads: 4
[2026-03-10 03:19:21] Checking for CVMFS
[2026-03-10 03:19:21] No cvmfs_config command found, will try listing directly
[2026-03-10 03:19:21] CVMFS is ok
[2026-03-10 03:19:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-10 03:19:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-10 03:19:21] Further information can be found at the LHC@home message board.
[2026-03-10 03:19:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-10 03:19:21] Checking for apptainer binary...
[2026-03-10 03:19:21] which: no apptainer in ((null))
[2026-03-10 03:19:21] apptainer is not installed, using version from CVMFS
[2026-03-10 03:19:21] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-10 03:19:21] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot184/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut23.grid.cesnet.cz
[2026-03-10 03:19:21] apptainer works
[2026-03-10 03:19:21] Set ATHENA_PROC_NUMBER=4
[2026-03-10 03:19:21] Set ATHENA_CORE_NUMBER=4
[2026-03-10 03:19:21] Starting ATLAS job with PandaID=7040399151
[2026-03-10 03:19:21] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot184/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-10 04:39:49]  *** The last 200 lines of the pilot log: ***
[2026-03-10 04:39:49]  protocol_id=None
[2026-03-10 04:39:49]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-10 04:39:49]  replicas=None
[2026-03-10 04:39:49]  scope=mc23_13p6TeV
[2026-03-10 04:39:49]  status=None
[2026-03-10 04:39:49]  status_code=0
[2026-03-10 04:39:49]  storage_token=
[2026-03-10 04:39:49]  surl=/var/lib/boinc/var/slot184/slots/0/PanDA_Pilot-7040399151/log.48955006._030645.job.log.tgz.1
[2026-03-10 04:39:49]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/da/db/log.48955006._030645.job.log.tgz.1
[2026-03-10 04:39:49]  workdir=None
[2026-03-10 04:39:49] ]
[2026-03-10 04:39:49] 2026-03-10 03:39:10,512 | INFO     | transferring file log.48955006._030645.job.log.tgz.1 from /var/lib/boinc/var/slot184/slots/0/PanDA_Pilot-7040399151/log.48955006._030645.job.log.tgz.1 to /var/lib/
[2026-03-10 04:39:49] 2026-03-10 03:39:10,512 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot184/slots/0/PanDA_Pilot-7040399151/log.48955006._030645.job.log.tgz.1 /var/lib/boinc/var/slot184/slots/0/
[2026-03-10 04:39:49] 2026-03-10 03:39:10,529 | INFO     | adding to output.list: log.48955006._030645.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/da/db/log.48955006._030645.job.log.tg
[2026-03-10 04:39:49] 2026-03-10 03:39:10,529 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-10 04:39:49] 2026-03-10 03:39:10,529 | INFO     | summary of transferred files:
[2026-03-10 04:39:49] 2026-03-10 03:39:10,530 | INFO     |  -- lfn=log.48955006._030645.job.log.tgz.1, status_code=0, status=transferred
[2026-03-10 04:39:49] 2026-03-10 03:39:10,530 | INFO     | stage-out finished correctly
[2026-03-10 04:39:49] 2026-03-10 03:39:11,086 | INFO     | time since job start (4777s) is within the limit (349056.0s)
[2026-03-10 04:39:49] 2026-03-10 03:39:13,092 | INFO     | time since job start (4779s) is within the limit (349056.0s)
[2026-03-10 04:39:49] 2026-03-10 03:39:14,061 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-10 04:39:49] 2026-03-10 03:39:15,097 | INFO     | time since job start (4781s) is within the limit (349056.0s)
[2026-03-10 04:39:49] 2026-03-10 03:39:15,420 | WARNING  | process 2924595 can no longer be monitored (due to stat problems) - aborting
[2026-03-10 04:39:49] 2026-03-10 03:39:15,421 | INFO     | using path: /var/lib/boinc/var/slot184/slots/0/PanDA_Pilot-7040399151/memory_monitor_summary.json (trf name=prmon)
[2026-03-10 04:39:49] 2026-03-10 03:39:15,430 | INFO     | job 7040399151 has state=finished
[2026-03-10 04:39:49] 2026-03-10 03:39:15,430 | INFO     | preparing for final server update for job 7040399151 in state='finished'
[2026-03-10 04:39:49] 2026-03-10 03:39:15,430 | INFO     | reading metadata from: /var/lib/boinc/var/slot184/slots/0/PanDA_Pilot-7040399151/jobReport.json
[2026-03-10 04:39:49] 2026-03-10 03:39:15,432 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot184/slots/0/workernode_map.json
[2026-03-10 04:39:49] 2026-03-10 03:39:15,433 | INFO     | this job has now completed (state=finished)
[2026-03-10 04:39:49] 2026-03-10 03:39:15,433 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-10 04:39:49] 2026-03-10 03:39:15,433 | INFO     | log transfer has been attempted: DONE
[2026-03-10 04:39:49] 2026-03-10 03:39:15,433 | INFO     | job 7040399151 has finished - writing final server update
[2026-03-10 04:39:49] 2026-03-10 03:39:15,434 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_59885/.job.ad'
[2026-03-10 04:39:49] 2026-03-10 03:39:15,434 | INFO     | total number of processed events: 400 (read)
[2026-03-10 04:39:49] 2026-03-10 03:39:15,462 | INFO     | using path: /var/lib/boinc/var/slot184/slots/0/PanDA_Pilot-7040399151/memory_monitor_summary.json (trf name=prmon)
[2026-03-10 04:39:49] 2026-03-10 03:39:15,463 | INFO     | extracted standard info from prmon json
[2026-03-10 04:39:49] 2026-03-10 03:39:15,463 | INFO     | extracted standard memory fields from prmon json
[2026-03-10 04:39:49] 2026-03-10 03:39:15,463 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-10 04:39:49] 2026-03-10 03:39:15,463 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-10 04:39:49] 2026-03-10 03:39:15,463 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-10 04:39:49] 2026-03-10 03:39:15,464 | INFO     | fitting pss+swap vs Time
[2026-03-10 04:39:49] 2026-03-10 03:39:15,464 | INFO     | sum of square deviations: 110960220.0
[2026-03-10 04:39:49] 2026-03-10 03:39:15,465 | INFO     | sum of deviations: -116409960.0
[2026-03-10 04:39:49] 2026-03-10 03:39:15,465 | INFO     | mean x: 1773111635.0
[2026-03-10 04:39:49] 2026-03-10 03:39:15,465 | INFO     | mean y: 2325626.084507042
[2026-03-10 04:39:49] 2026-03-10 03:39:15,465 | INFO     | intersect: 1862522501.1978097
[2026-03-10 04:39:49] 2026-03-10 03:39:15,465 | INFO     | chi2: 0.0002422172597324707
[2026-03-10 04:39:49] 2026-03-10 03:39:15,465 | INFO     | current memory leak: -1.05 B/s (using 71 data points, chi2=0.00)
[2026-03-10 04:39:49] 2026-03-10 03:39:15,465 | INFO     | could have reported an average CPU frequency of 3576 MHz (6 samples)
[2026-03-10 04:39:49] 2026-03-10 03:39:15,466 | INFO     | ..............................
[2026-03-10 04:39:49] 2026-03-10 03:39:15,466 | INFO     | . Timing measurements:
[2026-03-10 04:39:49] 2026-03-10 03:39:15,466 | INFO     | . get job = 0 s
[2026-03-10 04:39:49] 2026-03-10 03:39:15,466 | INFO     | . initial setup = 5 s
[2026-03-10 04:39:49] 2026-03-10 03:39:15,466 | INFO     | . payload setup = 5 s
[2026-03-10 04:39:49] 2026-03-10 03:39:15,466 | INFO     | . stage-in = 0 s
[2026-03-10 04:39:49] 2026-03-10 03:39:15,466 | INFO     | . payload execution = 4755 s
[2026-03-10 04:39:49] 2026-03-10 03:39:15,466 | INFO     | . stage-out = 0 s
[2026-03-10 04:39:49] 2026-03-10 03:39:15,466 | INFO     | . log creation = 0 s
[2026-03-10 04:39:49] 2026-03-10 03:39:15,466 | INFO     | ..............................
[2026-03-10 04:39:49] 2026-03-10 03:39:15,688 | INFO     | 
[2026-03-10 04:39:49] 2026-03-10 03:39:15,689 | INFO     | job summary report
[2026-03-10 04:39:49] 2026-03-10 03:39:15,689 | INFO     | --------------------------------------------------
[2026-03-10 04:39:49] 2026-03-10 03:39:15,689 | INFO     | PanDA job id: 7040399151
[2026-03-10 04:39:49] 2026-03-10 03:39:15,689 | INFO     | task id: 48955006
[2026-03-10 04:39:49] 2026-03-10 03:39:15,689 | INFO     | errors: (none)
[2026-03-10 04:39:49] 2026-03-10 03:39:15,689 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-10 04:39:49] 2026-03-10 03:39:15,689 | INFO     | pilot state: finished 
[2026-03-10 04:39:49] 2026-03-10 03:39:15,689 | INFO     | transexitcode: 0
[2026-03-10 04:39:49] 2026-03-10 03:39:15,689 | INFO     | exeerrorcode: 0
[2026-03-10 04:39:49] 2026-03-10 03:39:15,689 | INFO     | exeerrordiag: 
[2026-03-10 04:39:49] 2026-03-10 03:39:15,689 | INFO     | exitcode: 0
[2026-03-10 04:39:49] 2026-03-10 03:39:15,689 | INFO     | exitmsg: OK
[2026-03-10 04:39:49] 2026-03-10 03:39:15,689 | INFO     | cpuconsumptiontime: 18175 s
[2026-03-10 04:39:49] 2026-03-10 03:39:15,689 | INFO     | nevents: 400
[2026-03-10 04:39:49] 2026-03-10 03:39:15,690 | INFO     | neventsw: 0
[2026-03-10 04:39:49] 2026-03-10 03:39:15,690 | INFO     | pid: 2924595
[2026-03-10 04:39:49] 2026-03-10 03:39:15,690 | INFO     | pgrp: 2924595
[2026-03-10 04:39:49] 2026-03-10 03:39:15,690 | INFO     | corecount: 4
[2026-03-10 04:39:49] 2026-03-10 03:39:15,690 | INFO     | event service: False
[2026-03-10 04:39:49] 2026-03-10 03:39:15,690 | INFO     | sizes: {0: 2280038, 1: 2280244, 11: 2280272, 4764: 2306559, 4765: 2315581, 4769: 2315637, 4770: 2315959}
[2026-03-10 04:39:49] 2026-03-10 03:39:15,690 | INFO     | --------------------------------------------------
[2026-03-10 04:39:49] 2026-03-10 03:39:15,690 | INFO     | 
[2026-03-10 04:39:49] 2026-03-10 03:39:15,690 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot184/slots/0
[2026-03-10 04:39:49] 2026-03-10 03:39:15,708 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-10 04:39:49] 2026-03-10 03:39:15,709 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-10 04:39:49] 2026-03-10 03:39:15,709 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-10 04:39:49] 2026-03-10 03:39:15,709 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-10 04:39:49] 2026-03-10 03:39:15,709 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-10 04:39:49] 2026-03-10 03:39:15,709 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-10 04:39:49] 2026-03-10 03:39:15,709 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-10 04:39:49] 2026-03-10 03:39:15,709 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-10 04:39:49] 2026-03-10 03:39:15,709 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-10 04:39:49] 2026-03-10 03:39:15,709 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-10 04:39:49] 2026-03-10 03:39:15,709 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-10 04:39:49] 2026-03-10 03:39:15,709 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-10 04:39:49] 2026-03-10 03:39:15,709 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-10 04:39:49] 2026-03-10 03:39:15,709 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-10 04:39:49] 2026-03-10 03:39:15,709 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-10 04:39:49] 2026-03-10 03:39:15,709 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-10 04:39:49] 2026-03-10 03:39:15,709 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-10 04:39:49] 2026-03-10 03:39:15,710 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-10 04:39:49] 2026-03-10 03:39:15,710 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-10 04:39:49] 2026-03-10 03:39:15,710 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-10 04:39:49] 2026-03-10 03:39:15,710 | INFO     | job 7040399151 has completed (purged errors)
[2026-03-10 04:39:49] 2026-03-10 03:39:15,710 | INFO     | overall cleanup function is called
[2026-03-10 04:39:49] 2026-03-10 03:39:15,940 | INFO     | number of running child processes to parent process 2924595: 1
[2026-03-10 04:39:49] 2026-03-10 03:39:15,940 | INFO     | maximum number of monitored processes: 6
[2026-03-10 04:39:49] 2026-03-10 03:39:15,940 | INFO     | aborting job monitoring since job object (job id=7040399151) has expired
[2026-03-10 04:39:49] 2026-03-10 03:39:16,714 | INFO     | --- collectZombieJob: --- 10, [2924595]
[2026-03-10 04:39:49] 2026-03-10 03:39:16,714 | INFO     | zombie collector waiting for pid 2924595
[2026-03-10 04:39:49] 2026-03-10 03:39:16,714 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-10 04:39:49] 2026-03-10 03:39:16,714 | INFO     | collected zombie processes
[2026-03-10 04:39:49] 2026-03-10 03:39:16,714 | INFO     | will attempt to kill all subprocesses of pid=2924595
[2026-03-10 04:39:49] 2026-03-10 03:39:17,155 | INFO     | process IDs to be killed: [2924595] (in reverse order)
[2026-03-10 04:39:49] 2026-03-10 03:39:17,395 | WARNING  | found no corresponding commands to process id(s)
[2026-03-10 04:39:49] 2026-03-10 03:39:17,395 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-10 04:39:49] 2026-03-10 03:39:17,420 | INFO     | did not find any defunct processes belonging to 2924595
[2026-03-10 04:39:49] 2026-03-10 03:39:17,445 | INFO     | did not find any defunct processes belonging to 2924595
[2026-03-10 04:39:49] 2026-03-10 03:39:17,445 | INFO     | ready for new job
[2026-03-10 04:39:49] 2026-03-10 03:39:17,445 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-10 04:39:49] 2026-03-10 03:39:17,446 | INFO     | **************************************
[2026-03-10 04:39:49] 2026-03-10 03:39:17,446 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-10 04:39:49] 2026-03-10 03:39:17,446 | INFO     | **************************************
[2026-03-10 04:39:49] 2026-03-10 03:39:17,446 | INFO     | 
[2026-03-10 04:39:49] 2026-03-10 03:39:17,452 | INFO     | architecture information:
[2026-03-10 04:39:49] 2026-03-10 03:39:17,452 | INFO     | executing command: cat /etc/os-release
[2026-03-10 04:39:49] 2026-03-10 03:39:17,468 | INFO     | cat /etc/os-release:
[2026-03-10 04:39:49] NAME="CentOS Linux"
[2026-03-10 04:39:49] VERSION="7 (Core)"
[2026-03-10 04:39:49] ID="centos"
[2026-03-10 04:39:49] ID_LIKE="rhel fedora"
[2026-03-10 04:39:49] VERSION_ID="7"
[2026-03-10 04:39:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-10 04:39:49] ANSI_COLOR="0;31"
[2026-03-10 04:39:49] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-10 04:39:49] HOME_URL="https://www.centos.org/"
[2026-03-10 04:39:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-10 04:39:49] 
[2026-03-10 04:39:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-10 04:39:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-10 04:39:49] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-10 04:39:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-10 04:39:49] 
[2026-03-10 04:39:49] 2026-03-10 03:39:17,469 | INFO     | **************************************
[2026-03-10 04:39:49] 2026-03-10 03:39:17,971 | INFO     | executing command: df -mP /var/lib/boinc/var/slot184/slots/0
[2026-03-10 04:39:49] 2026-03-10 03:39:17,986 | INFO     | sufficient remaining disk space (21423456256 B)
[2026-03-10 04:39:49] 2026-03-10 03:39:17,986 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-10 04:39:49] 2026-03-10 03:39:17,986 | INFO     | current server update state: UPDATING_FINAL
[2026-03-10 04:39:49] 2026-03-10 03:39:17,986 | INFO     | update_server=False
[2026-03-10 04:39:49] 2026-03-10 03:39:17,986 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-10 04:39:49] 2026-03-10 03:39:18,442 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-10 04:39:49] 2026-03-10 03:39:18,443 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-10 04:39:49] 2026-03-10 03:39:18,443 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-10 04:39:49] 2026-03-10 03:39:18,443 | INFO     | will abort loop
[2026-03-10 04:39:49] 2026-03-10 03:39:18,588 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-10 04:39:49] 2026-03-10 03:39:18,716 | INFO     | all data control threads have been joined
[2026-03-10 04:39:49] 2026-03-10 03:39:18,992 | INFO     | [job] retrieve thread has finished
[2026-03-10 04:39:49] 2026-03-10 03:39:19,037 | INFO     | all payload control threads have been joined
[2026-03-10 04:39:49] 2026-03-10 03:39:19,215 | INFO     | all job control threads have been joined
[2026-03-10 04:39:49] 2026-03-10 03:39:19,448 | INFO     | [job] job monitor thread has finished
[2026-03-10 04:39:49] 2026-03-10 03:39:19,504 | INFO     | [job] validate thread has finished
[2026-03-10 04:39:49] 2026-03-10 03:39:19,516 | INFO     | [payload] validate_post thread has finished
[2026-03-10 04:39:49] 2026-03-10 03:39:19,723 | INFO     | [data] control thread has finished
[2026-03-10 04:39:49] 2026-03-10 03:39:19,940 | INFO     | [job] create_data_payload thread has finished
[2026-03-10 04:39:49] 2026-03-10 03:39:19,966 | INFO     | [data] copytool_in thread has finished
[2026-03-10 04:39:49] 2026-03-10 03:39:19,979 | INFO     | [payload] validate_pre thread has finished
[2026-03-10 04:39:49] 2026-03-10 03:39:20,042 | INFO     | [payload] control thread has finished
[2026-03-10 04:39:49] 2026-03-10 03:39:20,115 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-10 04:39:49] 2026-03-10 03:39:20,222 | INFO     | [job] control thread has finished
[2026-03-10 04:39:49] 2026-03-10 03:39:20,363 | INFO     | [payload] execute_payloads thread has finished
[2026-03-10 04:39:49] 2026-03-10 03:39:20,369 | INFO     | [payload] failed_post thread has finished
[2026-03-10 04:39:49] 2026-03-10 03:39:20,531 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-10 04:39:49] 2026-03-10 03:39:20,593 | INFO     | [data] copytool_out thread has finished
[2026-03-10 04:39:49] 2026-03-10 03:39:21,537 | INFO     | [job] queue monitor thread has finished
[2026-03-10 04:39:49] 2026-03-10 03:39:24,120 | INFO     | [data] queue_monitor thread has finished
[2026-03-10 04:39:49] 2026-03-10 03:39:28,790 | INFO     | job.realtimelogging is not enabled
[2026-03-10 04:39:49] 2026-03-10 03:39:29,795 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-10 04:39:49] 2026-03-10 03:39:41,833 | INFO     | [monitor] cgroup control has ended
[2026-03-10 04:39:49] 2026-03-10 03:39:43,213 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22842780849984)>', '<ExcThread(monitor, started 22842537412352)>']
[2026-03-10 04:39:49] 2026-03-10 03:39:48,238 | INFO     | all workflow threads have been joined
[2026-03-10 04:39:49] 2026-03-10 03:39:48,239 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-10 04:39:49] 2026-03-10 03:39:48,240 | INFO     | traces error code: 0
[2026-03-10 04:39:49] 2026-03-10 03:39:48,240 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-10 04:39:49] 2026-03-10 03:39:48,698 | INFO     | PID=2911815 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-10 04:39:49] 2026-03-10 03:39:48,698 | INFO     | .. there are 62 such processes running
[2026-03-10 04:39:49] 2026-03-10 03:39:48,698 | INFO     | found 0 job(s) in 20 queues
[2026-03-10 04:39:49] 2026-03-10 03:39:48,698 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-10 04:39:49] 2026-03-10 03:39:48,698 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-10 04:39:49] 2026-03-10 03:39:48,698 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-10 04:39:49] 2026-03-10 03:39:48,698 | INFO     | [monitor] control thread has ended
[2026-03-10 04:39:49] 2026-03-10 03:39:48,876 [wrapper] ==== pilot stdout END ====
[2026-03-10 04:39:49] 2026-03-10 03:39:48,879 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-10 04:39:49] 2026-03-10 03:39:48,882 [wrapper] pilotpid: 2911815
[2026-03-10 04:39:49] 2026-03-10 03:39:48,884 [wrapper] Pilot exit status: 0
[2026-03-10 04:39:49] 2026-03-10 03:39:48,902 [wrapper] pandaids: 7040399151
[2026-03-10 04:39:49] 2026-03-10 03:39:49,009 [wrapper] cleanup supervisor_pilot 3788967 2911816
[2026-03-10 04:39:49] 2026-03-10 03:39:49,012 [wrapper] Test setup, not cleaning
[2026-03-10 04:39:49] 2026-03-10 03:39:49,015 [wrapper] apfmon messages muted
[2026-03-10 04:39:49] 2026-03-10 03:39:49,018 [wrapper] ==== wrapper stdout END ====
[2026-03-10 04:39:49] 2026-03-10 03:39:49,020 [wrapper] ==== wrapper stderr END ====
[2026-03-10 04:39:49]  *** Error codes and diagnostics ***
[2026-03-10 04:39:49]     "exeErrorCode": 0,
[2026-03-10 04:39:49]     "exeErrorDiag": "",
[2026-03-10 04:39:49]     "pilotErrorCode": 0,
[2026-03-10 04:39:49]     "pilotErrorDiag": "",
[2026-03-10 04:39:49]  *** Listing of results directory ***
[2026-03-10 04:39:49] total 615960
[2026-03-10 04:39:49] -rw-r--r--. 1 boinc boinc    584627 Mar  9 01:36 pilot3.tar.gz
[2026-03-10 04:39:49] -rwx------. 1 boinc boinc     36322 Mar  9 01:39 runpilot2-wrapper.sh
[2026-03-10 04:39:49] -rw-r--r--. 1 boinc boinc      5111 Mar  9 01:41 queuedata.json
[2026-03-10 04:39:49] -rw-r--r--. 1 boinc boinc       100 Mar 10 03:19 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-10 04:39:49] -rwxr-xr-x. 1 boinc boinc      7986 Mar 10 03:19 run_atlas
[2026-03-10 04:39:49] -rw-r--r--. 1 boinc boinc       105 Mar 10 03:19 job.xml
[2026-03-10 04:39:49] -rw-r--r--. 1 boinc boinc      6707 Mar 10 03:19 init_data.xml
[2026-03-10 04:39:49] -rw-r--r--. 2 boinc boinc 440098024 Mar 10 03:19 EVNT.46701403._000613.pool.root.1
[2026-03-10 04:39:49] -rw-r--r--. 2 boinc boinc     15845 Mar 10 03:19 start_atlas.sh
[2026-03-10 04:39:49] drwxrwx--x. 2 boinc boinc      4096 Mar 10 03:19 shared
[2026-03-10 04:39:49] -rw-r--r--. 2 boinc boinc    597963 Mar 10 03:19 input.tar.gz
[2026-03-10 04:39:49] -rw-r--r--. 1 boinc boinc         0 Mar 10 03:19 boinc_lockfile
[2026-03-10 04:39:49] -rw-r--r--. 1 boinc boinc      2565 Mar 10 03:19 pandaJob.out
[2026-03-10 04:39:49] -rw-------. 1 boinc boinc   1002338 Mar 10 03:19 agis_schedconf.cvmfs.json
[2026-03-10 04:39:49] -rw-------. 1 boinc boinc   1511578 Mar 10 03:19 agis_ddmendpoints.agis.ALL.json
[2026-03-10 04:39:49] -rw-------. 1 boinc boinc       445 Mar 10 03:19 workernode_map.json
[2026-03-10 04:39:49] drwx------. 5 boinc boinc      4096 Mar 10 03:19 pilot3
[2026-03-10 04:39:49] -rw-------. 1 boinc boinc 184743050 Mar 10 04:38 HITS.48955006._030645.pool.root.1
[2026-03-10 04:39:49] -rw-r--r--. 1 boinc boinc       530 Mar 10 04:38 boinc_task_state.xml
[2026-03-10 04:39:49] -rw-------. 1 boinc boinc      1030 Mar 10 04:39 memory_monitor_summary.json
[2026-03-10 04:39:49] -rw-------. 1 boinc boinc        95 Mar 10 04:39 pilot_heartbeat.json
[2026-03-10 04:39:49] -rw-------. 1 boinc boinc    282688 Mar 10 04:39 log.48955006._030645.job.log.tgz.1
[2026-03-10 04:39:49] -rw-------. 1 boinc boinc      6355 Mar 10 04:39 heartbeat.json
[2026-03-10 04:39:49] -rw-r--r--. 1 boinc boinc        27 Mar 10 04:39 wrapper_checkpoint.txt
[2026-03-10 04:39:49] -rw-r--r--. 1 boinc boinc      8192 Mar 10 04:39 boinc_mmap_file
[2026-03-10 04:39:49] -rw-------. 1 boinc boinc       823 Mar 10 04:39 pilotlog.txt
[2026-03-10 04:39:49] -rw-------. 1 boinc boinc    702225 Mar 10 04:39 log.48955006._030645.job.log.1
[2026-03-10 04:39:49] -rw-------. 1 boinc boinc       357 Mar 10 04:39 output.list
[2026-03-10 04:39:49] -rw-r--r--. 1 boinc boinc       620 Mar 10 04:39 runtime_log
[2026-03-10 04:39:49] -rw-------. 1 boinc boinc   1003520 Mar 10 04:39 result.tar.gz
[2026-03-10 04:39:49] -rw-r--r--. 1 boinc boinc      9221 Mar 10 04:39 runtime_log.err
[2026-03-10 04:39:49] -rw-------. 1 boinc boinc       662 Mar 10 04:39 VNHMDm6pdJ9n9Rq4apOajLDm4fhM0noT9bVooX4SDmTOYLDmGEIqbn.diag
[2026-03-10 04:39:49] -rw-r--r--. 1 boinc boinc     21690 Mar 10 04:39 stderr.txt
[2026-03-10 04:39:49] HITS file was successfully produced:
[2026-03-10 04:39:49] -rw-------. 1 boinc boinc 184743050 Mar 10 04:38 shared/HITS.pool.root.1
[2026-03-10 04:39:49]  *** Contents of shared directory: ***
[2026-03-10 04:39:49] total 611788
[2026-03-10 04:39:49] -rw-r--r--. 2 boinc boinc 440098024 Mar 10 03:19 ATLAS.root_0
[2026-03-10 04:39:49] -rw-r--r--. 2 boinc boinc     15845 Mar 10 03:19 start_atlas.sh
[2026-03-10 04:39:49] -rw-r--r--. 2 boinc boinc    597963 Mar 10 03:19 input.tar.gz
[2026-03-10 04:39:49] -rw-------. 1 boinc boinc 184743050 Mar 10 04:38 HITS.pool.root.1
[2026-03-10 04:39:49] -rw-------. 1 boinc boinc   1003520 Mar 10 04:39 result.tar.gz
04:39:50 (2907304): run_atlas exited; CPU time 18374.423569
04:39:50 (2907304): called boinc_finish(0)

</stderr_txt>
]]>

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