Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
10:05:14 (1832656): wrapper (7.7.26015): starting
10:05:14 (1832656): wrapper: running run_atlas (--nthreads 12)
[2026-03-09 10:05:14] Arguments: --nthreads 12
[2026-03-09 10:05:14] Threads: 12
[2026-03-09 10:05:14] Checking for CVMFS
[2026-03-09 10:05:14] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-09 10:05:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-09 10:05:14] Running cvmfs_config stat atlas.cern.ch
[2026-03-09 10:05:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-09 10:05:14] 2.12.7.0 991347 17316 72676 157078 0 188 3388916 4194305 2742 130560 0 40553461 99.997 616746 1864 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.150.1:3128 1
[2026-03-09 10:05:14] CVMFS is ok
[2026-03-09 10:05:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-09 10:05:14] Checking for apptainer binary...
[2026-03-09 10:05:14] apptainer is not installed, using version from CVMFS
[2026-03-09 10:05:14] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-09 10:05:14] Trebeth
[2026-03-09 10:05:14] apptainer works
[2026-03-09 10:05:14] Set ATHENA_PROC_NUMBER=12
[2026-03-09 10:05:14] Set ATHENA_CORE_NUMBER=12
[2026-03-09 10:05:14] Starting ATLAS job with PandaID=7044425242
[2026-03-09 10:05:14] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-09 11:09:40]  *** The last 200 lines of the pilot log: ***
[2026-03-09 11:09:40]  replicas=None
[2026-03-09 11:09:40]  scope=mc23_13p6TeV
[2026-03-09 11:09:40]  status=None
[2026-03-09 11:09:40]  status_code=0
[2026-03-09 11:09:40]  storage_token=
[2026-03-09 11:09:40]  surl=/var/lib/boinc-client/slots/1/PanDA_Pilot-7044425242/log.48958554._002393.job.log.tgz.1
[2026-03-09 11:09:40]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bb/6c/log.48958554._002393.job.log.tgz.1
[2026-03-09 11:09:40]  workdir=None
[2026-03-09 11:09:40] ]
[2026-03-09 11:09:40] 2026-03-09 15:08:51,134 | INFO     | transferring file log.48958554._002393.job.log.tgz.1 from /var/lib/boinc-client/slots/1/PanDA_Pilot-7044425242/log.48958554._002393.job.log.tgz.1 to /var/lib/boinc
[2026-03-09 11:09:40] 2026-03-09 15:08:51,134 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/1/PanDA_Pilot-7044425242/log.48958554._002393.job.log.tgz.1 /var/lib/boinc-client/slots/1/log.489585
[2026-03-09 11:09:40] 2026-03-09 15:08:51,150 | INFO     | adding to output.list: log.48958554._002393.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bb/6c/log.48958554._002393.job.log.tg
[2026-03-09 11:09:40] 2026-03-09 15:08:51,151 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-09 11:09:40] 2026-03-09 15:08:51,151 | INFO     | summary of transferred files:
[2026-03-09 11:09:40] 2026-03-09 15:08:51,151 | INFO     |  -- lfn=log.48958554._002393.job.log.tgz.1, status_code=0, status=transferred
[2026-03-09 11:09:40] 2026-03-09 15:08:51,151 | INFO     | stage-out finished correctly
[2026-03-09 11:09:40] 2026-03-09 15:08:51,253 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-09 11:09:40] 2026-03-09 15:08:51,346 | INFO     | job 7044425242 has state=finished
[2026-03-09 11:09:40] 2026-03-09 15:08:51,347 | INFO     | preparing for final server update for job 7044425242 in state='finished'
[2026-03-09 11:09:40] 2026-03-09 15:08:51,348 | INFO     | reading metadata from: /var/lib/boinc-client/slots/1/PanDA_Pilot-7044425242/jobReport.json
[2026-03-09 11:09:40] 2026-03-09 15:08:51,351 | INFO     | added worker_node to metadata from /var/lib/boinc-client/slots/1/workernode_map.json
[2026-03-09 11:09:40] 2026-03-09 15:08:51,352 | INFO     | this job has now completed (state=finished)
[2026-03-09 11:09:40] 2026-03-09 15:08:51,352 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-09 11:09:40] 2026-03-09 15:08:51,352 | INFO     | log transfer has been attempted: DONE
[2026-03-09 11:09:40] 2026-03-09 15:08:51,352 | INFO     | job 7044425242 has finished - writing final server update
[2026-03-09 11:09:40] 2026-03-09 15:08:51,353 | INFO     | total number of processed events: 400 (read)
[2026-03-09 11:09:40] 2026-03-09 15:08:51,380 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-7044425242/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 11:09:40] 2026-03-09 15:08:51,381 | INFO     | extracted standard info from prmon json
[2026-03-09 11:09:40] 2026-03-09 15:08:51,381 | INFO     | extracted standard memory fields from prmon json
[2026-03-09 11:09:40] 2026-03-09 15:08:51,381 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-09 11:09:40] 2026-03-09 15:08:51,382 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-09 11:09:40] 2026-03-09 15:08:51,382 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-09 11:09:40] 2026-03-09 15:08:51,383 | INFO     | fitting pss+swap vs Time
[2026-03-09 11:09:40] 2026-03-09 15:08:51,384 | INFO     | sum of square deviations: 51573060.0
[2026-03-09 11:09:40] 2026-03-09 15:08:51,384 | INFO     | sum of deviations: 3057691795.0
[2026-03-09 11:09:40] 2026-03-09 15:08:51,384 | INFO     | mean x: 1773067099.0
[2026-03-09 11:09:40] 2026-03-09 15:08:51,384 | INFO     | mean y: 2676711.8727272726
[2026-03-09 11:09:40] 2026-03-09 15:08:51,384 | INFO     | intersect: -105119895433.28897
[2026-03-09 11:09:40] 2026-03-09 15:08:51,385 | INFO     | chi2: 0.14411984814771758
[2026-03-09 11:09:40] 2026-03-09 15:08:51,385 | INFO     | current memory leak: 59.29 B/s (using 55 data points, chi2=0.14)
[2026-03-09 11:09:40] 2026-03-09 15:08:51,385 | INFO     | could have reported an average CPU frequency of 2282 MHz (6 samples)
[2026-03-09 11:09:40] 2026-03-09 15:08:51,385 | INFO     | ..............................
[2026-03-09 11:09:40] 2026-03-09 15:08:51,386 | INFO     | . Timing measurements:
[2026-03-09 11:09:40] 2026-03-09 15:08:51,386 | INFO     | . get job = 0 s
[2026-03-09 11:09:40] 2026-03-09 15:08:51,386 | INFO     | . initial setup = 5 s
[2026-03-09 11:09:40] 2026-03-09 15:08:51,386 | INFO     | . payload setup = 4 s
[2026-03-09 11:09:40] 2026-03-09 15:08:51,386 | INFO     | . stage-in = 0 s
[2026-03-09 11:09:40] 2026-03-09 15:08:51,386 | INFO     | . payload execution = 3782 s
[2026-03-09 11:09:40] 2026-03-09 15:08:51,386 | INFO     | . stage-out = 0 s
[2026-03-09 11:09:40] 2026-03-09 15:08:51,386 | INFO     | . log creation = 0 s
[2026-03-09 11:09:40] 2026-03-09 15:08:51,386 | INFO     | ..............................
[2026-03-09 11:09:40] 2026-03-09 15:08:51,445 | INFO     | time since job start (3803s) is within the limit (349056.0s)
[2026-03-09 11:09:40] 2026-03-09 15:08:51,474 | INFO     | 
[2026-03-09 11:09:40] 2026-03-09 15:08:51,474 | INFO     | job summary report
[2026-03-09 11:09:40] 2026-03-09 15:08:51,474 | INFO     | --------------------------------------------------
[2026-03-09 11:09:40] 2026-03-09 15:08:51,475 | INFO     | PanDA job id: 7044425242
[2026-03-09 11:09:40] 2026-03-09 15:08:51,475 | INFO     | task id: 48958554
[2026-03-09 11:09:40] 2026-03-09 15:08:51,475 | INFO     | errors: (none)
[2026-03-09 11:09:40] 2026-03-09 15:08:51,475 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-09 11:09:40] 2026-03-09 15:08:51,475 | INFO     | pilot state: finished 
[2026-03-09 11:09:40] 2026-03-09 15:08:51,475 | INFO     | transexitcode: 0
[2026-03-09 11:09:40] 2026-03-09 15:08:51,475 | INFO     | exeerrorcode: 0
[2026-03-09 11:09:40] 2026-03-09 15:08:51,475 | INFO     | exeerrordiag: 
[2026-03-09 11:09:40] 2026-03-09 15:08:51,476 | INFO     | exitcode: 0
[2026-03-09 11:09:40] 2026-03-09 15:08:51,476 | INFO     | exitmsg: OK
[2026-03-09 11:09:40] 2026-03-09 15:08:51,476 | INFO     | cpuconsumptiontime: 39412 s
[2026-03-09 11:09:40] 2026-03-09 15:08:51,476 | INFO     | nevents: 400
[2026-03-09 11:09:40] 2026-03-09 15:08:51,476 | INFO     | neventsw: 0
[2026-03-09 11:09:40] 2026-03-09 15:08:51,476 | INFO     | pid: 1841704
[2026-03-09 11:09:40] 2026-03-09 15:08:51,476 | INFO     | pgrp: 1841704
[2026-03-09 11:09:40] 2026-03-09 15:08:51,476 | INFO     | corecount: 12
[2026-03-09 11:09:40] 2026-03-09 15:08:51,476 | INFO     | event service: False
[2026-03-09 11:09:40] 2026-03-09 15:08:51,476 | INFO     | sizes: {0: 2280178, 11: 2280178, 3790: 2305994, 3792: 2315200}
[2026-03-09 11:09:40] 2026-03-09 15:08:51,477 | INFO     | --------------------------------------------------
[2026-03-09 11:09:40] 2026-03-09 15:08:51,477 | INFO     | 
[2026-03-09 11:09:40] 2026-03-09 15:08:51,477 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/1
[2026-03-09 11:09:40] 2026-03-09 15:08:51,492 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-09 11:09:40] 2026-03-09 15:08:51,492 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-09 11:09:40] 2026-03-09 15:08:51,492 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-09 11:09:40] 2026-03-09 15:08:51,492 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-09 11:09:40] 2026-03-09 15:08:51,492 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-09 11:09:40] 2026-03-09 15:08:51,493 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-09 11:09:40] 2026-03-09 15:08:51,493 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-09 11:09:40] 2026-03-09 15:08:51,493 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-09 11:09:40] 2026-03-09 15:08:51,493 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-09 11:09:40] 2026-03-09 15:08:51,493 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-09 11:09:40] 2026-03-09 15:08:51,493 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-09 11:09:40] 2026-03-09 15:08:51,493 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-09 11:09:40] 2026-03-09 15:08:51,493 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-09 11:09:40] 2026-03-09 15:08:51,494 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-09 11:09:40] 2026-03-09 15:08:51,494 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-09 11:09:40] 2026-03-09 15:08:51,494 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-09 11:09:40] 2026-03-09 15:08:51,494 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-09 11:09:40] 2026-03-09 15:08:51,494 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-09 11:09:40] 2026-03-09 15:08:51,494 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-09 11:09:40] 2026-03-09 15:08:51,494 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-09 11:09:40] 2026-03-09 15:08:51,495 | INFO     | job 7044425242 has completed (purged errors)
[2026-03-09 11:09:40] 2026-03-09 15:08:51,495 | INFO     | overall cleanup function is called
[2026-03-09 11:09:40] 2026-03-09 15:08:52,503 | INFO     | --- collectZombieJob: --- 10, [1841704]
[2026-03-09 11:09:40] 2026-03-09 15:08:52,504 | INFO     | zombie collector waiting for pid 1841704
[2026-03-09 11:09:40] 2026-03-09 15:08:52,504 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-09 11:09:40] 2026-03-09 15:08:52,504 | INFO     | collected zombie processes
[2026-03-09 11:09:40] 2026-03-09 15:08:52,504 | INFO     | will attempt to kill all subprocesses of pid=1841704
[2026-03-09 11:09:40] 2026-03-09 15:08:52,752 | INFO     | process IDs to be killed: [1841704] (in reverse order)
[2026-03-09 11:09:40] 2026-03-09 15:08:52,821 | WARNING  | found no corresponding commands to process id(s)
[2026-03-09 11:09:40] 2026-03-09 15:08:52,822 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-09 11:09:40] 2026-03-09 15:08:52,828 | INFO     | did not find any defunct processes belonging to 1841704
[2026-03-09 11:09:40] 2026-03-09 15:08:52,834 | INFO     | did not find any defunct processes belonging to 1841704
[2026-03-09 11:09:40] 2026-03-09 15:08:52,834 | INFO     | ready for new job
[2026-03-09 11:09:40] 2026-03-09 15:08:52,834 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-09 11:09:40] 2026-03-09 15:08:52,836 | INFO     | **************************************
[2026-03-09 11:09:40] 2026-03-09 15:08:52,836 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-09 11:09:40] 2026-03-09 15:08:52,836 | INFO     | **************************************
[2026-03-09 11:09:40] 2026-03-09 15:08:52,836 | INFO     | 
[2026-03-09 11:09:40] 2026-03-09 15:08:52,857 | INFO     | architecture information:
[2026-03-09 11:09:40] 2026-03-09 15:08:52,858 | INFO     | executing command: cat /etc/os-release
[2026-03-09 11:09:40] 2026-03-09 15:08:52,872 | INFO     | cat /etc/os-release:
[2026-03-09 11:09:40] NAME="CentOS Linux"
[2026-03-09 11:09:40] VERSION="7 (Core)"
[2026-03-09 11:09:40] ID="centos"
[2026-03-09 11:09:40] ID_LIKE="rhel fedora"
[2026-03-09 11:09:40] VERSION_ID="7"
[2026-03-09 11:09:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-09 11:09:40] ANSI_COLOR="0;31"
[2026-03-09 11:09:40] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-09 11:09:40] HOME_URL="https://www.centos.org/"
[2026-03-09 11:09:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-09 11:09:40] 
[2026-03-09 11:09:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-09 11:09:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-09 11:09:40] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-09 11:09:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-09 11:09:40] 
[2026-03-09 11:09:40] 2026-03-09 15:08:52,872 | INFO     | **************************************
[2026-03-09 11:09:40] 2026-03-09 15:08:53,375 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/1
[2026-03-09 11:09:40] 2026-03-09 15:08:53,391 | INFO     | sufficient remaining disk space (395485118464 B)
[2026-03-09 11:09:40] 2026-03-09 15:08:53,391 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-09 11:09:40] 2026-03-09 15:08:53,391 | INFO     | current server update state: UPDATING_FINAL
[2026-03-09 11:09:40] 2026-03-09 15:08:53,392 | INFO     | update_server=False
[2026-03-09 11:09:40] 2026-03-09 15:08:53,392 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-09 11:09:40] 2026-03-09 15:08:53,392 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-09 11:09:40] 2026-03-09 15:08:53,392 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-09 11:09:40] 2026-03-09 15:08:53,392 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-09 11:09:40] 2026-03-09 15:08:53,393 | INFO     | found 0 job(s) in 20 queues
[2026-03-09 11:09:40] 2026-03-09 15:08:53,393 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-09 11:09:40] 2026-03-09 15:08:53,393 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-09 11:09:40] 2026-03-09 15:08:53,662 | INFO     | all job control threads have been joined
[2026-03-09 11:09:40] 2026-03-09 15:08:53,766 | INFO     | all payload control threads have been joined
[2026-03-09 11:09:40] 2026-03-09 15:08:54,261 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-09 11:09:40] 2026-03-09 15:08:54,342 | INFO     | all data control threads have been joined
[2026-03-09 11:09:40] 2026-03-09 15:08:54,395 | INFO     | [job] queue monitor thread has finished
[2026-03-09 11:09:40] 2026-03-09 15:08:54,397 | INFO     | [job] retrieve thread has finished
[2026-03-09 11:09:40] 2026-03-09 15:08:54,497 | WARNING  | process 1841704 can no longer be monitored (due to stat problems) - aborting
[2026-03-09 11:09:40] 2026-03-09 15:08:54,639 | INFO     | [job] validate thread has finished
[2026-03-09 11:09:40] 2026-03-09 15:08:54,668 | INFO     | [job] control thread has finished
[2026-03-09 11:09:40] 2026-03-09 15:08:54,707 | INFO     | using path: /var/lib/boinc-client/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 11:09:40] 2026-03-09 15:08:54,708 | INFO     | using path: /var/lib/boinc-client/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 11:09:40] 2026-03-09 15:08:54,709 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-09 11:09:40] 2026-03-09 15:08:54,709 | WARNING  | maxPSS not found in memory monitor output
[2026-03-09 11:09:40] 2026-03-09 15:08:54,710 | INFO     | skipping file size check of payload stdout file (/var/lib/boinc-client/slots/1/PanDA_Pilot-7044425242/payload.stdout) since it has not been created yet
[2026-03-09 11:09:40] 2026-03-09 15:08:54,710 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/1
[2026-03-09 11:09:40] 2026-03-09 15:08:54,716 | INFO     | [payload] validate_post thread has finished
[2026-03-09 11:09:40] 2026-03-09 15:08:54,724 | INFO     | sufficient remaining disk space (395485118464 B)
[2026-03-09 11:09:40] 2026-03-09 15:08:54,724 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-03-09 11:09:40] 2026-03-09 15:08:54,724 | INFO     | output file size check: skipping output file /var/lib/boinc-client/slots/1/PanDA_Pilot-7044425242/HITS.48958554._002393.pool.root.1 since it does not exist
[2026-03-09 11:09:40] 2026-03-09 15:08:54,772 | INFO     | [payload] control thread has finished
[2026-03-09 11:09:40] 2026-03-09 15:08:54,955 | INFO     | number of running child processes to parent process 1841704: 1
[2026-03-09 11:09:40] 2026-03-09 15:08:54,955 | INFO     | maximum number of monitored processes: 6
[2026-03-09 11:09:40] 2026-03-09 15:08:54,955 | INFO     | aborting job monitoring since job object (job id=7044425242) has expired
[2026-03-09 11:09:40] 2026-03-09 15:08:54,955 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-09 11:09:40] 2026-03-09 15:08:54,955 | INFO     | will abort loop
[2026-03-09 11:09:40] 2026-03-09 15:08:55,029 | INFO     | [job] create_data_payload thread has finished
[2026-03-09 11:09:40] 2026-03-09 15:08:55,119 | INFO     | [payload] validate_pre thread has finished
[2026-03-09 11:09:40] 2026-03-09 15:08:55,337 | INFO     | [payload] failed_post thread has finished
[2026-03-09 11:09:40] 2026-03-09 15:08:55,346 | INFO     | [data] control thread has finished
[2026-03-09 11:09:40] 2026-03-09 15:08:55,350 | INFO     | [data] copytool_in thread has finished
[2026-03-09 11:09:40] 2026-03-09 15:08:55,812 | INFO     | [payload] execute_payloads thread has finished
[2026-03-09 11:09:40] 2026-03-09 15:08:55,961 | INFO     | [job] job monitor thread has finished
[2026-03-09 11:09:40] 2026-03-09 15:08:56,266 | INFO     | [data] copytool_out thread has finished
[2026-03-09 11:09:40] 2026-03-09 15:08:57,394 | INFO     | [data] queue_monitor thread has finished
[2026-03-09 11:09:40] 2026-03-09 15:09:04,310 | INFO     | job.realtimelogging is not enabled
[2026-03-09 11:09:40] 2026-03-09 15:09:05,314 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-09 11:09:40] 2026-03-09 15:09:33,596 | INFO     | [monitor] cgroup control has ended
[2026-03-09 11:09:40] 2026-03-09 15:09:35,611 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140022514894656)>', '<ExcThread(monitor, started 140022082684672)>']
[2026-03-09 11:09:40] 2026-03-09 15:09:36,611 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-09 11:09:40] 2026-03-09 15:09:36,611 | INFO     | [monitor] control thread has ended
[2026-03-09 11:09:40] 2026-03-09 15:09:40,634 | INFO     | all workflow threads have been joined
[2026-03-09 11:09:40] 2026-03-09 15:09:40,635 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-09 11:09:40] 2026-03-09 15:09:40,635 | INFO     | traces error code: 0
[2026-03-09 11:09:40] 2026-03-09 15:09:40,636 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-09 11:09:40] 2026-03-09 15:09:40,761 [wrapper] ==== pilot stdout END ====
[2026-03-09 11:09:40] 2026-03-09 15:09:40,764 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-09 11:09:40] 2026-03-09 15:09:40,766 [wrapper] pilotpid: 1836953
[2026-03-09 11:09:40] 2026-03-09 15:09:40,768 [wrapper] Pilot exit status: 0
[2026-03-09 11:09:40] 2026-03-09 15:09:40,776 [wrapper] pandaids: 7044425242
[2026-03-09 11:09:40] 2026-03-09 15:09:40,821 [wrapper] cleanup supervisor_pilot 1899768 1836954
[2026-03-09 11:09:40] 2026-03-09 15:09:40,824 [wrapper] Test setup, not cleaning
[2026-03-09 11:09:40] 2026-03-09 15:09:40,826 [wrapper] apfmon messages muted
[2026-03-09 11:09:40] 2026-03-09 15:09:40,828 [wrapper] ==== wrapper stdout END ====
[2026-03-09 11:09:40] 2026-03-09 15:09:40,830 [wrapper] ==== wrapper stderr END ====
[2026-03-09 11:09:40]  *** Error codes and diagnostics ***
[2026-03-09 11:09:40]     "exeErrorCode": 0,
[2026-03-09 11:09:40]     "exeErrorDiag": "",
[2026-03-09 11:09:40]     "pilotErrorCode": 0,
[2026-03-09 11:09:40]     "pilotErrorDiag": "",
[2026-03-09 11:09:40]  *** Listing of results directory ***
[2026-03-09 11:09:40] total 473320
[2026-03-09 11:09:40] -rw-r--r-- 1 boinc boinc    602657 Feb  3 06:11 pilot3.tar.gz
[2026-03-09 11:09:40] -rwx------ 1 boinc boinc     36322 Mar  6 22:06 runpilot2-wrapper.sh
[2026-03-09 11:09:40] -rw-r--r-- 1 boinc boinc      5111 Mar  6 22:06 queuedata.json
[2026-03-09 11:09:40] -rw-r--r-- 1 boinc boinc       100 Mar  9 10:05 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-09 11:09:40] -rwxr-xr-x 1 boinc boinc      7986 Mar  9 10:05 run_atlas
[2026-03-09 11:09:40] -rw-r--r-- 1 boinc boinc       105 Mar  9 10:05 job.xml
[2026-03-09 11:09:40] -rw-r--r-- 2 boinc boinc     15845 Mar  9 10:05 start_atlas.sh
[2026-03-09 11:09:40] drwxrwx--x 2 boinc boinc      4096 Mar  9 10:05 shared
[2026-03-09 11:09:40] -rw-r--r-- 2 boinc boinc    616292 Mar  9 10:05 input.tar.gz
[2026-03-09 11:09:40] -rw-r--r-- 1 boinc boinc      7579 Mar  9 10:05 init_data.xml
[2026-03-09 11:09:40] -rw-r--r-- 2 boinc boinc 277103977 Mar  9 10:05 EVNT.48958551._000096.pool.root.1
[2026-03-09 11:09:40] -rw-r--r-- 1 boinc boinc         0 Mar  9 10:05 boinc_lockfile
[2026-03-09 11:09:40] -rw-r--r-- 1 boinc boinc      2517 Mar  9 10:05 pandaJob.out
[2026-03-09 11:09:40] -rw------- 1 boinc boinc        50 Mar  9 10:05 setup.sh.local
[2026-03-09 11:09:40] -rw------- 1 boinc boinc    990728 Mar  9 10:05 agis_schedconf.cvmfs.json
[2026-03-09 11:09:40] -rw------- 1 boinc boinc   1511578 Mar  9 10:05 agis_ddmendpoints.agis.ALL.json
[2026-03-09 11:09:40] -rw------- 1 boinc boinc       429 Mar  9 10:05 workernode_map.json
[2026-03-09 11:09:40] drwx------ 7 boinc boinc      4096 Mar  9 10:05 pilot3
[2026-03-09 11:09:40] -rw------- 1 boinc boinc 201676130 Mar  9 11:08 HITS.48958554._002393.pool.root.1
[2026-03-09 11:09:40] -rw-r--r-- 1 boinc boinc       529 Mar  9 11:08 boinc_task_state.xml
[2026-03-09 11:09:40] -rw------- 1 boinc boinc        95 Mar  9 11:08 pilot_heartbeat.json
[2026-03-09 11:09:40] -rw------- 1 boinc boinc      1043 Mar  9 11:08 memory_monitor_summary.json
[2026-03-09 11:09:40] -rw------- 1 boinc boinc    385273 Mar  9 11:08 log.48958554._002393.job.log.tgz.1
[2026-03-09 11:09:40] -rw------- 1 boinc boinc      6328 Mar  9 11:08 heartbeat.json
[2026-03-09 11:09:40] -rw-r--r-- 1 boinc boinc      8192 Mar  9 11:09 boinc_mmap_file
[2026-03-09 11:09:40] -rw-r--r-- 1 boinc boinc        27 Mar  9 11:09 wrapper_checkpoint.txt
[2026-03-09 11:09:40] -rw------- 1 boinc boinc      6149 Mar  9 11:09 pilotlog.txt
[2026-03-09 11:09:40] -rw------- 1 boinc boinc    580110 Mar  9 11:09 log.48958554._002393.job.log.1
[2026-03-09 11:09:40] -rw------- 1 boinc boinc       357 Mar  9 11:09 output.list
[2026-03-09 11:09:40] -rw-r--r-- 1 boinc boinc       620 Mar  9 11:09 runtime_log
[2026-03-09 11:09:40] -rw------- 1 boinc boinc    983040 Mar  9 11:09 result.tar.gz
[2026-03-09 11:09:40] -rw-r--r-- 1 boinc boinc      9403 Mar  9 11:09 runtime_log.err
[2026-03-09 11:09:40] -rw------- 1 boinc boinc       650 Mar  9 11:09 i9OODm9AxI9n9Rq4apOajLDm4fhM0noT9bVooX4SDm9GSLDmD5GKZn.diag
[2026-03-09 11:09:40] -rw-r--r-- 1 boinc boinc     21704 Mar  9 11:09 stderr.txt
[2026-03-09 11:09:40] HITS file was successfully produced:
[2026-03-09 11:09:40] -rw------- 1 boinc boinc 201676130 Mar  9 11:08 shared/HITS.pool.root.1
[2026-03-09 11:09:40]  *** Contents of shared directory: ***
[2026-03-09 11:09:40] total 469152
[2026-03-09 11:09:40] -rw-r--r-- 2 boinc boinc     15845 Mar  9 10:05 start_atlas.sh
[2026-03-09 11:09:40] -rw-r--r-- 2 boinc boinc    616292 Mar  9 10:05 input.tar.gz
[2026-03-09 11:09:40] -rw-r--r-- 2 boinc boinc 277103977 Mar  9 10:05 ATLAS.root_0
[2026-03-09 11:09:40] -rw------- 1 boinc boinc 201676130 Mar  9 11:08 HITS.pool.root.1
[2026-03-09 11:09:40] -rw------- 1 boinc boinc    983040 Mar  9 11:09 result.tar.gz
11:09:42 (1832656): run_atlas exited; CPU time 39480.436539
11:09:42 (1832656): called boinc_finish(0)

</stderr_txt>
]]>

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