Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:02:24 (27621): wrapper (7.7.26015): starting
19:02:24 (27621): wrapper: running run_atlas (--nthreads 2)
[2026-03-09 19:02:24] Arguments: --nthreads 2
[2026-03-09 19:02:24] Threads: 2
[2026-03-09 19:02:24] Checking for CVMFS
[2026-03-09 19:02:24] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-09 19:02:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-09 19:02:25] Running cvmfs_config stat atlas.cern.ch
[2026-03-09 19:02:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-09 19:02:25] 2.9.2.0 2856 159 50500 157085 1 49 27224638 36864000 0 130560 0 74049 99.965 8640 9536 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-09 19:02:25] CVMFS is ok
[2026-03-09 19:02:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-09 19:02:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-09 19:02:25] Further information can be found at the LHC@home message board.
[2026-03-09 19:02:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-09 19:02:25] Checking for apptainer binary...
[2026-03-09 19:02:25] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-09 19:02:25] Running /usr/bin/apptainer --version
[2026-03-09 19:02:25] apptainer version 1.4.1-1.1
[2026-03-09 19:02:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-09 19:02:25] thA337
[2026-03-09 19:02:25] apptainer works
[2026-03-09 19:02:25] Set ATHENA_PROC_NUMBER=2
[2026-03-09 19:02:25] Set ATHENA_CORE_NUMBER=2
[2026-03-09 19:02:25] Starting ATLAS job with PandaID=7040269144
[2026-03-09 19:02:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-09 21:02:01]  *** The last 200 lines of the pilot log: ***
[2026-03-09 21:02:01] 2026-03-09 20:01:34,627 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-09 21:02:01] 2026-03-09 20:01:34,628 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-09 21:02:01] 2026-03-09 20:01:34,628 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-09 21:02:01] 2026-03-09 20:01:34,628 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-09 21:02:01] 2026-03-09 20:01:34,628 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-09 21:02:01] 2026-03-09 20:01:34,628 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-09 21:02:01] 2026-03-09 20:01:34,628 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-09 21:02:01] 2026-03-09 20:01:34,629 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-09 21:02:01] 2026-03-09 20:01:34,629 | INFO     | job 7040269144 has completed (purged errors)
[2026-03-09 21:02:01] 2026-03-09 20:01:34,629 | INFO     | overall cleanup function is called
[2026-03-09 21:02:01] 2026-03-09 20:01:35,638 | INFO     | --- collectZombieJob: --- 10, [36061]
[2026-03-09 21:02:01] 2026-03-09 20:01:35,638 | INFO     | zombie collector waiting for pid 36061
[2026-03-09 21:02:01] 2026-03-09 20:01:35,639 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-09 21:02:01] 2026-03-09 20:01:35,639 | INFO     | collected zombie processes
[2026-03-09 21:02:01] 2026-03-09 20:01:35,639 | INFO     | will attempt to kill all subprocesses of pid=36061
[2026-03-09 21:02:01] 2026-03-09 20:01:35,669 | INFO     | process IDs to be killed: [36061] (in reverse order)
[2026-03-09 21:02:01] 2026-03-09 20:01:35,690 | WARNING  | found no corresponding commands to process id(s)
[2026-03-09 21:02:01] 2026-03-09 20:01:35,690 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-09 21:02:01] 2026-03-09 20:01:35,691 | INFO     | did not find any defunct processes belonging to 36061
[2026-03-09 21:02:01] 2026-03-09 20:01:35,691 | INFO     | did not find any defunct processes belonging to 36061
[2026-03-09 21:02:01] 2026-03-09 20:01:35,691 | INFO     | ready for new job
[2026-03-09 21:02:01] 2026-03-09 20:01:35,691 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-09 21:02:01] 2026-03-09 20:01:35,692 | INFO     | **************************************
[2026-03-09 21:02:01] 2026-03-09 20:01:35,692 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-09 21:02:01] 2026-03-09 20:01:35,692 | INFO     | **************************************
[2026-03-09 21:02:01] 2026-03-09 20:01:35,692 | INFO     | 
[2026-03-09 21:02:01] 2026-03-09 20:01:35,692 | INFO     | architecture information:
[2026-03-09 21:02:01] 2026-03-09 20:01:35,692 | INFO     | executing command: cat /etc/os-release
[2026-03-09 21:02:01] 2026-03-09 20:01:35,700 | INFO     | cat /etc/os-release:
[2026-03-09 21:02:01] NAME="CentOS Linux"
[2026-03-09 21:02:01] VERSION="7 (Core)"
[2026-03-09 21:02:01] ID="centos"
[2026-03-09 21:02:01] ID_LIKE="rhel fedora"
[2026-03-09 21:02:01] VERSION_ID="7"
[2026-03-09 21:02:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-09 21:02:01] ANSI_COLOR="0;31"
[2026-03-09 21:02:01] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-09 21:02:01] HOME_URL="https://www.centos.org/"
[2026-03-09 21:02:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-09 21:02:01] 
[2026-03-09 21:02:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-09 21:02:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-09 21:02:01] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-09 21:02:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-09 21:02:01] 
[2026-03-09 21:02:01] 2026-03-09 20:01:35,701 | INFO     | **************************************
[2026-03-09 21:02:01] 2026-03-09 20:01:36,204 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-09 21:02:01] 2026-03-09 20:01:36,216 | INFO     | sufficient remaining disk space (482638561280 B)
[2026-03-09 21:02:01] 2026-03-09 20:01:36,216 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-09 21:02:01] 2026-03-09 20:01:36,217 | INFO     | current server update state: UPDATING_FINAL
[2026-03-09 21:02:01] 2026-03-09 20:01:36,217 | INFO     | update_server=False
[2026-03-09 21:02:01] 2026-03-09 20:01:36,217 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-09 21:02:01] 2026-03-09 20:01:36,217 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-09 21:02:01] 2026-03-09 20:01:36,217 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-09 21:02:01] 2026-03-09 20:01:36,217 | INFO     | found 0 job(s) in 20 queues
[2026-03-09 21:02:01] 2026-03-09 20:01:36,217 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-09 21:02:01] 2026-03-09 20:01:36,217 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-09 21:02:01] 2026-03-09 20:01:36,427 | INFO     | all job control threads have been joined
[2026-03-09 21:02:01] 2026-03-09 20:01:36,568 | INFO     | all payload control threads have been joined
[2026-03-09 21:02:01] 2026-03-09 20:01:36,700 | INFO     | all data control threads have been joined
[2026-03-09 21:02:01] 2026-03-09 20:01:36,872 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-09 21:02:01] 2026-03-09 20:01:37,222 | INFO     | [job] retrieve thread has finished
[2026-03-09 21:02:01] 2026-03-09 20:01:37,223 | INFO     | [job] queue monitor thread has finished
[2026-03-09 21:02:01] 2026-03-09 20:01:37,282 | INFO     | [job] create_data_payload thread has finished
[2026-03-09 21:02:01] 2026-03-09 20:01:37,325 | INFO     | [payload] validate_pre thread has finished
[2026-03-09 21:02:01] 2026-03-09 20:01:37,374 | INFO     | [data] copytool_in thread has finished
[2026-03-09 21:02:01] 2026-03-09 20:01:37,433 | INFO     | [job] control thread has finished
[2026-03-09 21:02:01] 2026-03-09 20:01:37,570 | INFO     | [payload] control thread has finished
[2026-03-09 21:02:01] 2026-03-09 20:01:37,677 | INFO     | [payload] failed_post thread has finished
[2026-03-09 21:02:01] 2026-03-09 20:01:37,706 | INFO     | [data] control thread has finished
[2026-03-09 21:02:01] 2026-03-09 20:01:37,859 | WARNING  | process 36061 can no longer be monitored (due to stat problems) - aborting
[2026-03-09 21:02:01] 2026-03-09 20:01:37,879 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 21:02:01] 2026-03-09 20:01:37,904 | INFO     | number of running child processes to parent process 36061: 1
[2026-03-09 21:02:01] 2026-03-09 20:01:37,904 | INFO     | maximum number of monitored processes: 6
[2026-03-09 21:02:01] 2026-03-09 20:01:37,904 | INFO     | aborting job monitoring since job object (job id=7040269144) has expired
[2026-03-09 21:02:01] 2026-03-09 20:01:37,904 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-09 21:02:01] 2026-03-09 20:01:37,904 | INFO     | will abort loop
[2026-03-09 21:02:01] 2026-03-09 20:01:38,065 | INFO     | [payload] execute_payloads thread has finished
[2026-03-09 21:02:01] 2026-03-09 20:01:38,309 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-09 21:02:01] 2026-03-09 20:01:38,493 | INFO     | [payload] validate_post thread has finished
[2026-03-09 21:02:01] 2026-03-09 20:01:38,607 | INFO     | [job] validate thread has finished
[2026-03-09 21:02:01] 2026-03-09 20:01:38,878 | INFO     | [data] copytool_out thread has finished
[2026-03-09 21:02:01] 2026-03-09 20:01:38,910 | INFO     | [job] job monitor thread has finished
[2026-03-09 21:02:01] 2026-03-09 20:01:42,316 | INFO     | [data] queue_monitor thread has finished
[2026-03-09 21:02:01] 2026-03-09 20:01:46,969 | INFO     | job.realtimelogging is not enabled
[2026-03-09 21:02:01] 2026-03-09 20:01:47,975 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-09 21:02:01] 2026-03-09 20:01:56,331 | INFO     | [monitor] cgroup control has ended
[2026-03-09 21:02:01] 2026-03-09 20:01:56,604 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139930150221632)>', '<ExcThread(monitor, started 139929656993536)>']
[2026-03-09 21:02:01] 2026-03-09 20:01:57,324 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-09 21:02:01] 2026-03-09 20:01:57,325 | INFO     | [monitor] control thread has ended
[2026-03-09 21:02:01] 2026-03-09 20:02:01,630 | INFO     | all workflow threads have been joined
[2026-03-09 21:02:01] 2026-03-09 20:02:01,631 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-09 21:02:01] 2026-03-09 20:02:01,632 | INFO     | traces error code: 0
[2026-03-09 21:02:01] 2026-03-09 20:02:01,632 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-09 21:02:01] 2026-03-09 20:02:01,673 [wrapper] ==== pilot stdout END ====
[2026-03-09 21:02:01] 2026-03-09 20:02:01,676 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-09 21:02:01] 2026-03-09 20:02:01,678 [wrapper] pilotpid: 31647
[2026-03-09 21:02:01] 2026-03-09 20:02:01,681 [wrapper] Pilot exit status: 0
[2026-03-09 21:02:01] 2026-03-09 20:02:01,688 [wrapper] pandaids: 7040269144
[2026-03-09 21:02:01] 2026-03-09 20:02:01,701 [wrapper] cleanup supervisor_pilot   41112 31648
[2026-03-09 21:02:01] 2026-03-09 20:02:01,704 [wrapper] Test setup, not cleaning
[2026-03-09 21:02:01] 2026-03-09 20:02:01,706 [wrapper] apfmon messages muted
[2026-03-09 21:02:01] 2026-03-09 20:02:01,708 [wrapper] ==== wrapper stdout END ====
[2026-03-09 21:02:01] 2026-03-09 20:02:01,710 [wrapper] ==== wrapper stderr END ====
[2026-03-09 21:02:01]  *** Error codes and diagnostics ***
[2026-03-09 21:02:01]     "exeErrorCode": 0,
[2026-03-09 21:02:01]     "exeErrorDiag": "",
[2026-03-09 21:02:01]     "pilotErrorCode": 0,
[2026-03-09 21:02:01]     "pilotErrorDiag": "",
[2026-03-09 21:02:01]  *** Listing of results directory ***
[2026-03-09 21:02:01] total 619856
[2026-03-09 21:02:01] -rw-r--r-- 1 boinc boinc    584627 Mar  9 00:13 pilot3.tar.gz
[2026-03-09 21:02:01] -rwx------ 1 boinc boinc     36322 Mar  9 00:18 runpilot2-wrapper.sh
[2026-03-09 21:02:01] -rw-r--r-- 1 boinc boinc      5111 Mar  9 00:18 queuedata.json
[2026-03-09 21:02:01] -rw-r--r-- 1 boinc boinc       100 Mar  9 19:02 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-09 21:02:01] -rwxr-xr-x 1 boinc boinc      7986 Mar  9 19:02 run_atlas
[2026-03-09 21:02:01] -rw-r--r-- 1 boinc boinc       105 Mar  9 19:02 job.xml
[2026-03-09 21:02:01] -rw-r--r-- 2 boinc boinc 440698769 Mar  9 19:02 EVNT.46701403._000609.pool.root.1
[2026-03-09 21:02:01] -rw-r--r-- 2 boinc boinc    597953 Mar  9 19:02 input.tar.gz
[2026-03-09 21:02:01] drwxrwx--x 2 boinc boinc      4096 Mar  9 19:02 shared
[2026-03-09 21:02:01] -rw-r--r-- 2 boinc boinc     15845 Mar  9 19:02 start_atlas.sh
[2026-03-09 21:02:01] -rw-r--r-- 1 boinc boinc         0 Mar  9 19:02 boinc_setup_complete
[2026-03-09 21:02:01] -rw-r--r-- 1 boinc boinc      6205 Mar  9 19:02 init_data.xml
[2026-03-09 21:02:01] -rw-r--r-- 1 boinc boinc         0 Mar  9 19:02 boinc_lockfile
[2026-03-09 21:02:01] -rw-r--r-- 1 boinc boinc      2564 Mar  9 19:02 pandaJob.out
[2026-03-09 21:02:01] -rw------- 1 boinc boinc   1002716 Mar  9 19:02 agis_schedconf.cvmfs.json
[2026-03-09 21:02:01] -rw------- 1 boinc boinc   1511578 Mar  9 19:02 agis_ddmendpoints.agis.ALL.json
[2026-03-09 21:02:01] -rw------- 1 boinc boinc       418 Mar  9 19:02 workernode_map.json
[2026-03-09 21:02:01] drwx------ 5 boinc boinc      4096 Mar  9 19:02 pilot3
[2026-03-09 21:02:01] -rw------- 1 boinc boinc        95 Mar  9 21:01 pilot_heartbeat.json
[2026-03-09 21:02:01] -rw------- 1 boinc boinc 187509805 Mar  9 21:01 HITS.48955006._030440.pool.root.1
[2026-03-09 21:02:01] -rw-r--r-- 1 boinc boinc       530 Mar  9 21:01 boinc_task_state.xml
[2026-03-09 21:02:01] -rw------- 1 boinc boinc      1015 Mar  9 21:01 memory_monitor_summary.json
[2026-03-09 21:02:01] -rw------- 1 boinc boinc    278508 Mar  9 21:01 log.48955006._030440.job.log.tgz.1
[2026-03-09 21:02:01] -rw------- 1 boinc boinc      6294 Mar  9 21:01 heartbeat.json
[2026-03-09 21:02:01] -rw-r--r-- 1 boinc boinc        27 Mar  9 21:01 wrapper_checkpoint.txt
[2026-03-09 21:02:01] -rw-r--r-- 1 boinc boinc      8192 Mar  9 21:01 boinc_mmap_file
[2026-03-09 21:02:01] -rw------- 1 boinc boinc      5144 Mar  9 21:02 pilotlog.txt
[2026-03-09 21:02:01] -rw------- 1 boinc boinc   1022713 Mar  9 21:02 log.48955006._030440.job.log.1
[2026-03-09 21:02:01] -rw------- 1 boinc boinc       357 Mar  9 21:02 output.list
[2026-03-09 21:02:01] -rw-r--r-- 1 boinc boinc       620 Mar  9 21:02 runtime_log
[2026-03-09 21:02:01] -rw------- 1 boinc boinc   1320960 Mar  9 21:02 result.tar.gz
[2026-03-09 21:02:01] -rw-r--r-- 1 boinc boinc      8896 Mar  9 21:02 runtime_log.err
[2026-03-09 21:02:01] -rw------- 1 boinc boinc       657 Mar  9 21:02 gsHKDm5YcJ9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm7faLDmBcRH1m.diag
[2026-03-09 21:02:01] -rw-r--r-- 1 boinc boinc     12234 Mar  9 21:02 stderr.txt
[2026-03-09 21:02:02] HITS file was successfully produced:
[2026-03-09 21:02:02] -rw------- 1 boinc boinc 187509805 Mar  9 21:01 shared/HITS.pool.root.1
[2026-03-09 21:02:02]  *** Contents of shared directory: ***
[2026-03-09 21:02:02] total 615388
[2026-03-09 21:02:02] -rw-r--r-- 2 boinc boinc 440698769 Mar  9 19:02 ATLAS.root_0
[2026-03-09 21:02:02] -rw-r--r-- 2 boinc boinc    597953 Mar  9 19:02 input.tar.gz
[2026-03-09 21:02:02] -rw-r--r-- 2 boinc boinc     15845 Mar  9 19:02 start_atlas.sh
[2026-03-09 21:02:02] -rw------- 1 boinc boinc 187509805 Mar  9 21:01 HITS.pool.root.1
[2026-03-09 21:02:02] -rw------- 1 boinc boinc   1320960 Mar  9 21:02 result.tar.gz
21:02:03 (27621): run_atlas exited; CPU time 13804.819180
21:02:03 (27621): called boinc_finish(0)

</stderr_txt>
]]>

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