Stderr output

<core_client_version>7.18.1</core_client_version>
<![CDATA[
<stderr_txt>
02:42:07 (110373): wrapper (7.7.26015): starting
02:42:07 (110373): wrapper: running run_atlas (--nthreads 6)
[2026-03-11 02:42:07] Arguments: --nthreads 6
[2026-03-11 02:42:07] Threads: 6
[2026-03-11 02:42:07] Checking for CVMFS
[2026-03-11 02:42:07] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-11 02:42:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-11 02:42:10] Running cvmfs_config stat atlas.cern.ch
[2026-03-11 02:42:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-11 02:42:10] 2.11.5.0 74033 70 43716 157137 1 50 3869541 4194304 0 130560 0 45192 99.994 2685 590 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.3.250:3128 1
[2026-03-11 02:42:10] CVMFS is ok
[2026-03-11 02:42:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-11 02:42:10] Checking for apptainer binary...
[2026-03-11 02:42:10] apptainer is not installed, using version from CVMFS
[2026-03-11 02:42:10] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-11 02:42:10] boinc-b450f
[2026-03-11 02:42:10] apptainer works
[2026-03-11 02:42:10] Set ATHENA_PROC_NUMBER=6
[2026-03-11 02:42:10] Set ATHENA_CORE_NUMBER=6
[2026-03-11 02:42:10] Starting ATLAS job with PandaID=7033987892
[2026-03-11 02:42:10] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-11 03:38:34]  *** The last 200 lines of the pilot log: ***
[2026-03-11 03:38:34]  replicas=None
[2026-03-11 03:38:34]  scope=mc23_13p6TeV
[2026-03-11 03:38:34]  status=None
[2026-03-11 03:38:34]  status_code=0
[2026-03-11 03:38:34]  storage_token=
[2026-03-11 03:38:34]  surl=/var/lib/boinc-client/slots/3/PanDA_Pilot-7033987892/log.48700930._000520.job.log.tgz.1
[2026-03-11 03:38:34]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/79/2f/log.48700930._000520.job.log.tgz.1
[2026-03-11 03:38:34]  workdir=None
[2026-03-11 03:38:34] ]
[2026-03-11 03:38:34] 2026-03-11 02:37:44,919 | INFO     | transferring file log.48700930._000520.job.log.tgz.1 from /var/lib/boinc-client/slots/3/PanDA_Pilot-7033987892/log.48700930._000520.job.log.tgz.1 to /var/lib/boinc
[2026-03-11 03:38:34] 2026-03-11 02:37:44,919 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/3/PanDA_Pilot-7033987892/log.48700930._000520.job.log.tgz.1 /var/lib/boinc-client/slots/3/log.487009
[2026-03-11 03:38:34] 2026-03-11 02:37:44,928 | INFO     | adding to output.list: log.48700930._000520.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/79/2f/log.48700930._000520.job.log.tg
[2026-03-11 03:38:34] 2026-03-11 02:37:44,928 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-11 03:38:34] 2026-03-11 02:37:44,928 | INFO     | summary of transferred files:
[2026-03-11 03:38:34] 2026-03-11 02:37:44,928 | INFO     |  -- lfn=log.48700930._000520.job.log.tgz.1, status_code=0, status=transferred
[2026-03-11 03:38:34] 2026-03-11 02:37:44,928 | INFO     | stage-out finished correctly
[2026-03-11 03:38:34] 2026-03-11 02:37:45,303 | INFO     | PID=115018 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-11 03:38:34] 2026-03-11 02:37:45,781 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-11 03:38:34] 2026-03-11 02:37:46,303 | INFO     | time since job start (3323s) is within the limit (349056.0s)
[2026-03-11 03:38:34] 2026-03-11 02:37:47,276 | INFO     | job 7033987892 has state=finished
[2026-03-11 03:38:34] 2026-03-11 02:37:47,276 | INFO     | preparing for final server update for job 7033987892 in state='finished'
[2026-03-11 03:38:34] 2026-03-11 02:37:47,276 | INFO     | reading metadata from: /var/lib/boinc-client/slots/3/PanDA_Pilot-7033987892/jobReport.json
[2026-03-11 03:38:34] 2026-03-11 02:37:47,278 | INFO     | added worker_node to metadata from /var/lib/boinc-client/slots/3/workernode_map.json
[2026-03-11 03:38:34] 2026-03-11 02:37:47,278 | INFO     | this job has now completed (state=finished)
[2026-03-11 03:38:34] 2026-03-11 02:37:47,278 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-11 03:38:34] 2026-03-11 02:37:47,278 | INFO     | log transfer has been attempted: DONE
[2026-03-11 03:38:34] 2026-03-11 02:37:47,278 | INFO     | job 7033987892 has finished - writing final server update
[2026-03-11 03:38:34] 2026-03-11 02:37:47,278 | INFO     | total number of processed events: 400 (read)
[2026-03-11 03:38:34] 2026-03-11 02:37:47,280 | INFO     | using path: /var/lib/boinc-client/slots/3/PanDA_Pilot-7033987892/memory_monitor_summary.json (trf name=prmon)
[2026-03-11 03:38:34] 2026-03-11 02:37:47,281 | INFO     | extracted standard info from prmon json
[2026-03-11 03:38:34] 2026-03-11 02:37:47,281 | INFO     | extracted standard memory fields from prmon json
[2026-03-11 03:38:34] 2026-03-11 02:37:47,281 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-11 03:38:34] 2026-03-11 02:37:47,281 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-11 03:38:34] 2026-03-11 02:37:47,281 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-11 03:38:34] 2026-03-11 02:37:47,282 | INFO     | fitting pss+swap vs Time
[2026-03-11 03:38:34] 2026-03-11 02:37:47,282 | INFO     | sum of square deviations: 34277852.0
[2026-03-11 03:38:34] 2026-03-11 02:37:47,282 | INFO     | sum of deviations: -6932697061.500002
[2026-03-11 03:38:34] 2026-03-11 02:37:47,282 | INFO     | mean x: 1773195098.5
[2026-03-11 03:38:34] 2026-03-11 02:37:47,282 | INFO     | mean y: 2681098.3958333335
[2026-03-11 03:38:34] 2026-03-11 02:37:47,282 | INFO     | intersect: 358631467080.585
[2026-03-11 03:38:34] 2026-03-11 02:37:47,282 | INFO     | chi2: 0.08720721919786466
[2026-03-11 03:38:34] 2026-03-11 02:37:47,283 | INFO     | current memory leak: -202.25 B/s (using 48 data points, chi2=0.09)
[2026-03-11 03:38:34] 2026-03-11 02:37:47,283 | INFO     | could have reported an average CPU frequency of 3950 MHz (5 samples)
[2026-03-11 03:38:34] 2026-03-11 02:37:47,283 | INFO     | ..............................
[2026-03-11 03:38:34] 2026-03-11 02:37:47,283 | INFO     | . Timing measurements:
[2026-03-11 03:38:34] 2026-03-11 02:37:47,283 | INFO     | . get job = 0 s
[2026-03-11 03:38:34] 2026-03-11 02:37:47,283 | INFO     | . initial setup = 2 s
[2026-03-11 03:38:34] 2026-03-11 02:37:47,283 | INFO     | . payload setup = 2 s
[2026-03-11 03:38:34] 2026-03-11 02:37:47,283 | INFO     | . stage-in = 0 s
[2026-03-11 03:38:34] 2026-03-11 02:37:47,283 | INFO     | . payload execution = 3303 s
[2026-03-11 03:38:34] 2026-03-11 02:37:47,283 | INFO     | . stage-out = 0 s
[2026-03-11 03:38:34] 2026-03-11 02:37:47,283 | INFO     | . log creation = 0 s
[2026-03-11 03:38:34] 2026-03-11 02:37:47,283 | INFO     | ..............................
[2026-03-11 03:38:34] 2026-03-11 02:37:47,454 | INFO     | 
[2026-03-11 03:38:34] 2026-03-11 02:37:47,454 | INFO     | job summary report
[2026-03-11 03:38:34] 2026-03-11 02:37:47,454 | INFO     | --------------------------------------------------
[2026-03-11 03:38:34] 2026-03-11 02:37:47,454 | INFO     | PanDA job id: 7033987892
[2026-03-11 03:38:34] 2026-03-11 02:37:47,454 | INFO     | task id: 48700930
[2026-03-11 03:38:34] 2026-03-11 02:37:47,454 | INFO     | errors: (none)
[2026-03-11 03:38:34] 2026-03-11 02:37:47,454 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-11 03:38:34] 2026-03-11 02:37:47,454 | INFO     | pilot state: finished 
[2026-03-11 03:38:34] 2026-03-11 02:37:47,454 | INFO     | transexitcode: 0
[2026-03-11 03:38:34] 2026-03-11 02:37:47,454 | INFO     | exeerrorcode: 0
[2026-03-11 03:38:34] 2026-03-11 02:37:47,454 | INFO     | exeerrordiag: 
[2026-03-11 03:38:34] 2026-03-11 02:37:47,454 | INFO     | exitcode: 0
[2026-03-11 03:38:34] 2026-03-11 02:37:47,454 | INFO     | exitmsg: OK
[2026-03-11 03:38:34] 2026-03-11 02:37:47,454 | INFO     | cpuconsumptiontime: 18918 s
[2026-03-11 03:38:34] 2026-03-11 02:37:47,455 | INFO     | nevents: 400
[2026-03-11 03:38:34] 2026-03-11 02:37:47,455 | INFO     | neventsw: 0
[2026-03-11 03:38:34] 2026-03-11 02:37:47,455 | INFO     | pid: 119661
[2026-03-11 03:38:34] 2026-03-11 02:37:47,455 | INFO     | pgrp: 119661
[2026-03-11 03:38:34] 2026-03-11 02:37:47,455 | INFO     | corecount: 6
[2026-03-11 03:38:34] 2026-03-11 02:37:47,455 | INFO     | event service: False
[2026-03-11 03:38:34] 2026-03-11 02:37:47,455 | INFO     | sizes: {0: 2280177, 11: 2280177, 3310: 2314842, 3311: 2314842, 3313: 2315068}
[2026-03-11 03:38:34] 2026-03-11 02:37:47,455 | INFO     | --------------------------------------------------
[2026-03-11 03:38:34] 2026-03-11 02:37:47,455 | INFO     | 
[2026-03-11 03:38:34] 2026-03-11 02:37:47,455 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/3
[2026-03-11 03:38:34] 2026-03-11 02:37:47,463 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-11 03:38:34] 2026-03-11 02:37:47,463 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-11 03:38:34] 2026-03-11 02:37:47,463 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-11 03:38:34] 2026-03-11 02:37:47,463 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-11 03:38:34] 2026-03-11 02:37:47,463 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-11 03:38:34] 2026-03-11 02:37:47,463 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-11 03:38:34] 2026-03-11 02:37:47,463 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-11 03:38:34] 2026-03-11 02:37:47,463 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-11 03:38:34] 2026-03-11 02:37:47,463 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-11 03:38:34] 2026-03-11 02:37:47,463 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-11 03:38:34] 2026-03-11 02:37:47,463 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-11 03:38:34] 2026-03-11 02:37:47,463 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-11 03:38:34] 2026-03-11 02:37:47,464 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-11 03:38:34] 2026-03-11 02:37:47,464 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-11 03:38:34] 2026-03-11 02:37:47,464 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-11 03:38:34] 2026-03-11 02:37:47,464 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-11 03:38:34] 2026-03-11 02:37:47,464 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-11 03:38:34] 2026-03-11 02:37:47,464 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-11 03:38:34] 2026-03-11 02:37:47,464 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-11 03:38:34] 2026-03-11 02:37:47,464 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-11 03:38:34] 2026-03-11 02:37:47,464 | INFO     | job 7033987892 has completed (purged errors)
[2026-03-11 03:38:34] 2026-03-11 02:37:47,464 | INFO     | overall cleanup function is called
[2026-03-11 03:38:34] 2026-03-11 02:37:48,470 | INFO     | --- collectZombieJob: --- 10, [119661]
[2026-03-11 03:38:34] 2026-03-11 02:37:48,470 | INFO     | zombie collector waiting for pid 119661
[2026-03-11 03:38:34] 2026-03-11 02:37:48,470 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-11 03:38:34] 2026-03-11 02:37:48,471 | INFO     | collected zombie processes
[2026-03-11 03:38:34] 2026-03-11 02:37:48,471 | INFO     | will attempt to kill all subprocesses of pid=119661
[2026-03-11 03:38:34] 2026-03-11 02:37:48,533 | INFO     | process IDs to be killed: [119661] (in reverse order)
[2026-03-11 03:38:34] 2026-03-11 02:37:48,555 | WARNING  | found no corresponding commands to process id(s)
[2026-03-11 03:38:34] 2026-03-11 02:37:48,555 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-11 03:38:34] 2026-03-11 02:37:48,557 | INFO     | did not find any defunct processes belonging to 119661
[2026-03-11 03:38:34] 2026-03-11 02:37:48,559 | INFO     | did not find any defunct processes belonging to 119661
[2026-03-11 03:38:34] 2026-03-11 02:37:48,559 | INFO     | ready for new job
[2026-03-11 03:38:34] 2026-03-11 02:37:48,559 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-11 03:38:34] 2026-03-11 02:37:48,559 | INFO     | **************************************
[2026-03-11 03:38:34] 2026-03-11 02:37:48,559 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-11 03:38:34] 2026-03-11 02:37:48,559 | INFO     | **************************************
[2026-03-11 03:38:34] 2026-03-11 02:37:48,559 | INFO     | 
[2026-03-11 03:38:34] 2026-03-11 02:37:48,560 | INFO     | architecture information:
[2026-03-11 03:38:34] 2026-03-11 02:37:48,560 | INFO     | executing command: cat /etc/os-release
[2026-03-11 03:38:34] 2026-03-11 02:37:48,567 | INFO     | cat /etc/os-release:
[2026-03-11 03:38:34] NAME="CentOS Linux"
[2026-03-11 03:38:34] VERSION="7 (Core)"
[2026-03-11 03:38:34] ID="centos"
[2026-03-11 03:38:34] ID_LIKE="rhel fedora"
[2026-03-11 03:38:34] VERSION_ID="7"
[2026-03-11 03:38:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-11 03:38:34] ANSI_COLOR="0;31"
[2026-03-11 03:38:34] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-11 03:38:34] HOME_URL="https://www.centos.org/"
[2026-03-11 03:38:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-11 03:38:34] 
[2026-03-11 03:38:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-11 03:38:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-11 03:38:34] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-11 03:38:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-11 03:38:34] 
[2026-03-11 03:38:34] 2026-03-11 02:37:48,567 | INFO     | **************************************
[2026-03-11 03:38:34] 2026-03-11 02:37:48,817 | WARNING  | process 119661 can no longer be monitored (due to stat problems) - aborting
[2026-03-11 03:38:34] 2026-03-11 02:37:48,866 | INFO     | using path: /var/lib/boinc-client/slots/3/memory_monitor_summary.json (trf name=prmon)
[2026-03-11 03:38:34] 2026-03-11 02:37:48,867 | INFO     | using path: /var/lib/boinc-client/slots/3/memory_monitor_summary.json (trf name=prmon)
[2026-03-11 03:38:34] 2026-03-11 02:37:48,867 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-11 03:38:34] 2026-03-11 02:37:48,867 | WARNING  | maxPSS not found in memory monitor output
[2026-03-11 03:38:34] 2026-03-11 02:37:48,867 | INFO     | skipping file size check of payload stdout file (/var/lib/boinc-client/slots/3/PanDA_Pilot-7033987892/payload.stdout) since it has not been created yet
[2026-03-11 03:38:34] 2026-03-11 02:37:48,867 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/3
[2026-03-11 03:38:34] 2026-03-11 02:37:48,874 | INFO     | sufficient remaining disk space (20249051136 B)
[2026-03-11 03:38:34] 2026-03-11 02:37:48,874 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-03-11 03:38:34] 2026-03-11 02:37:48,874 | INFO     | output file size check: skipping output file /var/lib/boinc-client/slots/3/PanDA_Pilot-7033987892/HITS.48700930._000520.pool.root.1 since it does not exist
[2026-03-11 03:38:34] 2026-03-11 02:37:48,936 | INFO     | number of running child processes to parent process 119661: 1
[2026-03-11 03:38:34] 2026-03-11 02:37:48,936 | INFO     | maximum number of monitored processes: 6
[2026-03-11 03:38:34] 2026-03-11 02:37:48,936 | INFO     | aborting job monitoring since job object (job id=7033987892) has expired
[2026-03-11 03:38:34] 2026-03-11 02:37:49,070 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/3
[2026-03-11 03:38:34] 2026-03-11 02:37:49,079 | INFO     | sufficient remaining disk space (20249051136 B)
[2026-03-11 03:38:34] 2026-03-11 02:37:49,079 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-11 03:38:34] 2026-03-11 02:37:49,079 | INFO     | current server update state: UPDATING_FINAL
[2026-03-11 03:38:34] 2026-03-11 02:37:49,079 | INFO     | update_server=False
[2026-03-11 03:38:34] 2026-03-11 02:37:49,079 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-11 03:38:34] 2026-03-11 02:37:49,079 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-11 03:38:34] 2026-03-11 02:37:49,079 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-11 03:38:34] 2026-03-11 02:37:49,079 | INFO     | will abort loop
[2026-03-11 03:38:34] 2026-03-11 02:37:49,948 | INFO     | all payload control threads have been joined
[2026-03-11 03:38:34] 2026-03-11 02:37:50,000 | INFO     | all data control threads have been joined
[2026-03-11 03:38:34] 2026-03-11 02:37:50,084 | INFO     | [job] retrieve thread has finished
[2026-03-11 03:38:34] 2026-03-11 02:37:50,085 | INFO     | [job] queue monitor thread has finished
[2026-03-11 03:38:34] 2026-03-11 02:37:50,085 | INFO     | [job] job monitor thread has finished
[2026-03-11 03:38:34] 2026-03-11 02:37:50,155 | INFO     | [data] copytool_in thread has finished
[2026-03-11 03:38:34] 2026-03-11 02:37:50,385 | INFO     | [payload] failed_post thread has finished
[2026-03-11 03:38:34] 2026-03-11 02:37:50,491 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-11 03:38:34] 2026-03-11 02:37:50,550 | INFO     | all job control threads have been joined
[2026-03-11 03:38:34] 2026-03-11 02:37:50,953 | INFO     | [payload] control thread has finished
[2026-03-11 03:38:34] 2026-03-11 02:37:51,000 | INFO     | [data] control thread has finished
[2026-03-11 03:38:34] 2026-03-11 02:37:51,230 | INFO     | [payload] execute_payloads thread has finished
[2026-03-11 03:38:34] 2026-03-11 02:37:51,270 | INFO     | [payload] validate_pre thread has finished
[2026-03-11 03:38:34] 2026-03-11 02:37:51,311 | INFO     | [job] validate thread has finished
[2026-03-11 03:38:34] 2026-03-11 02:37:51,397 | INFO     | [job] create_data_payload thread has finished
[2026-03-11 03:38:34] 2026-03-11 02:37:51,469 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-11 03:38:34] 2026-03-11 02:37:51,556 | INFO     | [job] control thread has finished
[2026-03-11 03:38:34] 2026-03-11 02:37:51,665 | INFO     | [payload] validate_post thread has finished
[2026-03-11 03:38:34] 2026-03-11 02:37:51,841 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-11 03:38:34] 2026-03-11 02:37:52,496 | INFO     | [data] copytool_out thread has finished
[2026-03-11 03:38:34] 2026-03-11 02:37:55,846 | INFO     | [data] queue_monitor thread has finished
[2026-03-11 03:38:34] 2026-03-11 02:38:19,451 | INFO     | PID=115018 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-11 03:38:34] 2026-03-11 02:38:19,451 | INFO     | found 0 job(s) in 20 queues
[2026-03-11 03:38:34] 2026-03-11 02:38:19,451 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-11 03:38:34] 2026-03-11 02:38:19,451 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-11 03:38:34] 2026-03-11 02:38:28,572 | INFO     | [monitor] cgroup control has ended
[2026-03-11 03:38:34] 2026-03-11 02:38:28,950 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140641440339776)>', '<ExcThread(monitor, started 140640885126912)>']
[2026-03-11 03:38:34] 2026-03-11 02:38:29,485 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-11 03:38:34] 2026-03-11 02:38:29,485 | INFO     | [monitor] control thread has ended
[2026-03-11 03:38:34] 2026-03-11 02:38:33,975 | INFO     | all workflow threads have been joined
[2026-03-11 03:38:34] 2026-03-11 02:38:33,975 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-11 03:38:34] 2026-03-11 02:38:33,975 | INFO     | traces error code: 0
[2026-03-11 03:38:34] 2026-03-11 02:38:33,975 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-11 03:38:34] 2026-03-11 02:38:34,044 [wrapper] ==== pilot stdout END ====
[2026-03-11 03:38:34] 2026-03-11 02:38:34,046 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-11 03:38:34] 2026-03-11 02:38:34,047 [wrapper] pilotpid: 115018
[2026-03-11 03:38:34] 2026-03-11 02:38:34,048 [wrapper] Pilot exit status: 0
[2026-03-11 03:38:34] 2026-03-11 02:38:34,054 [wrapper] pandaids: 7033987892
[2026-03-11 03:38:34] 2026-03-11 02:38:34,067 [wrapper] cleanup supervisor_pilot  136366 115019
[2026-03-11 03:38:34] 2026-03-11 02:38:34,068 [wrapper] Test setup, not cleaning
[2026-03-11 03:38:34] 2026-03-11 02:38:34,070 [wrapper] apfmon messages muted
[2026-03-11 03:38:34] 2026-03-11 02:38:34,071 [wrapper] ==== wrapper stdout END ====
[2026-03-11 03:38:34] 2026-03-11 02:38:34,072 [wrapper] ==== wrapper stderr END ====
[2026-03-11 03:38:34]  *** Error codes and diagnostics ***
[2026-03-11 03:38:34]     "exeErrorCode": 0,
[2026-03-11 03:38:34]     "exeErrorDiag": "",
[2026-03-11 03:38:34]     "pilotErrorCode": 0,
[2026-03-11 03:38:34]     "pilotErrorDiag": "",
[2026-03-11 03:38:34]  *** Listing of results directory ***
[2026-03-11 03:38:34] total 330575
[2026-03-11 03:38:34] -rw-r--r-- 1 boinc boinc    584627 Feb 28 23:55 pilot3.tar.gz
[2026-03-11 03:38:34] -rw-r--r-- 1 boinc boinc      5111 Feb 28 23:56 queuedata.json
[2026-03-11 03:38:34] -rwx------ 1 boinc boinc     36322 Feb 28 23:56 runpilot2-wrapper.sh
[2026-03-11 03:38:34] -rw-r--r-- 1 boinc boinc       100 Mar 11 02:42 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-11 03:38:34] -rwxr-xr-x 1 boinc boinc      7986 Mar 11 02:42 run_atlas
[2026-03-11 03:38:34] -rw-r--r-- 1 boinc boinc       105 Mar 11 02:42 job.xml
[2026-03-11 03:38:34] -rw-r--r-- 2 boinc boinc     15845 Mar 11 02:42 start_atlas.sh
[2026-03-11 03:38:34] drwxrwx--x 2 boinc boinc         5 Mar 11 02:42 shared
[2026-03-11 03:38:34] -rw-r--r-- 2 boinc boinc    597943 Mar 11 02:42 input.tar.gz
[2026-03-11 03:38:34] -rw-r--r-- 1 boinc boinc      6795 Mar 11 02:42 init_data.xml
[2026-03-11 03:38:34] -rw-r--r-- 2 boinc boinc 187675529 Mar 11 02:42 EVNT.48700928._000021.pool.root.1
[2026-03-11 03:38:34] -rw-r--r-- 1 boinc boinc         0 Mar 11 02:42 boinc_lockfile
[2026-03-11 03:38:34] -rw-r--r-- 1 boinc boinc      2516 Mar 11 02:42 pandaJob.out
[2026-03-11 03:38:34] -rw------- 1 boinc boinc        56 Mar 11 02:42 setup.sh.local
[2026-03-11 03:38:34] -rw------- 1 boinc boinc   1006644 Mar 11 02:42 agis_schedconf.cvmfs.json
[2026-03-11 03:38:34] -rw------- 1 boinc boinc   1511578 Mar 11 02:42 agis_ddmendpoints.agis.ALL.json
[2026-03-11 03:38:34] -rw------- 1 boinc boinc       418 Mar 11 02:42 workernode_map.json
[2026-03-11 03:38:34] drwx------ 5 boinc boinc        22 Mar 11 02:42 pilot3
[2026-03-11 03:38:34] -rw------- 1 boinc boinc 148907050 Mar 11 03:37 HITS.48700930._000520.pool.root.1
[2026-03-11 03:38:34] -rw------- 1 boinc boinc      1024 Mar 11 03:37 memory_monitor_summary.json
[2026-03-11 03:38:34] -rw-r--r-- 1 boinc boinc       529 Mar 11 03:37 boinc_task_state.xml
[2026-03-11 03:38:34] -rw------- 1 boinc boinc        95 Mar 11 03:37 pilot_heartbeat.json
[2026-03-11 03:38:34] -rw------- 1 boinc boinc    277274 Mar 11 03:37 log.48700930._000520.job.log.tgz.1
[2026-03-11 03:38:34] -rw------- 1 boinc boinc      6292 Mar 11 03:37 heartbeat.json
[2026-03-11 03:38:34] -rw-r--r-- 1 boinc boinc        27 Mar 11 03:38 wrapper_checkpoint.txt
[2026-03-11 03:38:34] -rw-r--r-- 1 boinc boinc      8192 Mar 11 03:38 boinc_mmap_file
[2026-03-11 03:38:34] -rw------- 1 boinc boinc      6268 Mar 11 03:38 pilotlog.txt
[2026-03-11 03:38:34] -rw------- 1 boinc boinc    504501 Mar 11 03:38 log.48700930._000520.job.log.1
[2026-03-11 03:38:34] -rw-r--r-- 1 boinc boinc      9463 Mar 11 03:38 runtime_log.err
[2026-03-11 03:38:34] -rw-r--r-- 1 boinc boinc       620 Mar 11 03:38 runtime_log
[2026-03-11 03:38:34] -rw------- 1 boinc boinc    798720 Mar 11 03:38 result.tar.gz
[2026-03-11 03:38:34] -rw------- 1 boinc boinc       357 Mar 11 03:38 output.list
[2026-03-11 03:38:34] -rw------- 1 boinc boinc       657 Mar 11 03:38 9akKDmgPiG9n9Rq4apOajLDm4fhM0noT9bVooX4SDmxS6KDmqmcHbn.diag
[2026-03-11 03:38:34] -rw-r--r-- 1 boinc boinc     21900 Mar 11 03:38 stderr.txt
[2026-03-11 03:38:34] HITS file was successfully produced:
[2026-03-11 03:38:34] -rw------- 1 boinc boinc 148907050 Mar 11 03:37 shared/HITS.pool.root.1
[2026-03-11 03:38:34]  *** Contents of shared directory: ***
[2026-03-11 03:38:34] total 329497
[2026-03-11 03:38:34] -rw-r--r-- 2 boinc boinc     15845 Mar 11 02:42 start_atlas.sh
[2026-03-11 03:38:34] -rw-r--r-- 2 boinc boinc    597943 Mar 11 02:42 input.tar.gz
[2026-03-11 03:38:34] -rw-r--r-- 2 boinc boinc 187675529 Mar 11 02:42 ATLAS.root_0
[2026-03-11 03:38:34] -rw------- 1 boinc boinc 148907050 Mar 11 03:37 HITS.pool.root.1
[2026-03-11 03:38:34] -rw------- 1 boinc boinc    798720 Mar 11 03:38 result.tar.gz
03:38:35 (110373): run_atlas exited; CPU time 18956.116032
03:38:35 (110373): called boinc_finish(0)

</stderr_txt>
]]>

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