Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:21:21 (1839427): wrapper (7.7.26015): starting
02:21:21 (1839427): wrapper: running run_atlas (--nthreads 4)
[2026-03-10 02:21:21] Arguments: --nthreads 4
[2026-03-10 02:21:21] Threads: 4
[2026-03-10 02:21:21] Checking for CVMFS
[2026-03-10 02:21:21] No cvmfs_config command found, will try listing directly
[2026-03-10 02:21:21] CVMFS is ok
[2026-03-10 02:21:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-10 02:21:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-10 02:21:21] Further information can be found at the LHC@home message board.
[2026-03-10 02:21:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-10 02:21:21] Checking for apptainer binary...
[2026-03-10 02:21:21] which: no apptainer in ((null))
[2026-03-10 02:21:21] apptainer is not installed, using version from CVMFS
[2026-03-10 02:21:21] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-10 02:21:21] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot16/slots/7/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut02.grid.cesnet.cz
[2026-03-10 02:21:21] apptainer works
[2026-03-10 02:21:22] Set ATHENA_PROC_NUMBER=4
[2026-03-10 02:21:22] Set ATHENA_CORE_NUMBER=4
[2026-03-10 02:21:22] Starting ATLAS job with PandaID=7046723408
[2026-03-10 02:21:22] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot16/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-10 05:38:01]  *** The last 200 lines of the pilot log: ***
[2026-03-10 05:38:01] 2026-03-10 04:36:55,510 | INFO     | time since job start (11719s) is within the limit (349056.0s)
[2026-03-10 05:38:01] 2026-03-10 04:36:55,984 | INFO     | job 7046723408 has state=finished
[2026-03-10 05:38:01] 2026-03-10 04:36:55,984 | INFO     | preparing for final server update for job 7046723408 in state='finished'
[2026-03-10 05:38:01] 2026-03-10 04:36:55,984 | INFO     | reading metadata from: /var/lib/boinc/var/slot16/slots/7/PanDA_Pilot-7046723408/jobReport.json
[2026-03-10 05:38:01] 2026-03-10 04:36:55,987 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot16/slots/7/workernode_map.json
[2026-03-10 05:38:01] 2026-03-10 04:36:55,988 | INFO     | this job has now completed (state=finished)
[2026-03-10 05:38:01] 2026-03-10 04:36:55,988 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-10 05:38:01] 2026-03-10 04:36:55,988 | INFO     | log transfer has been attempted: DONE
[2026-03-10 05:38:01] 2026-03-10 04:36:55,988 | INFO     | job 7046723408 has finished - writing final server update
[2026-03-10 05:38:01] 2026-03-10 04:36:55,989 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_556457/.job.ad'
[2026-03-10 05:38:01] 2026-03-10 04:36:55,989 | INFO     | total number of processed events: 400 (read)
[2026-03-10 05:38:01] 2026-03-10 04:36:56,002 | INFO     | using path: /var/lib/boinc/var/slot16/slots/7/PanDA_Pilot-7046723408/memory_monitor_summary.json (trf name=prmon)
[2026-03-10 05:38:01] 2026-03-10 04:36:56,003 | INFO     | extracted standard info from prmon json
[2026-03-10 05:38:01] 2026-03-10 04:36:56,003 | INFO     | extracted standard memory fields from prmon json
[2026-03-10 05:38:01] 2026-03-10 04:36:56,003 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-10 05:38:01] 2026-03-10 04:36:56,003 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-10 05:38:01] 2026-03-10 04:36:56,003 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-10 05:38:01] 2026-03-10 04:36:56,007 | INFO     | fitting pss+swap vs Time
[2026-03-10 05:38:01] 2026-03-10 04:36:56,008 | INFO     | sum of square deviations: 2194675568.0
[2026-03-10 05:38:01] 2026-03-10 04:36:56,009 | INFO     | sum of deviations: 15014757434.5
[2026-03-10 05:38:01] 2026-03-10 04:36:56,009 | INFO     | mean x: 1773111543.5
[2026-03-10 05:38:01] 2026-03-10 04:36:56,009 | INFO     | mean y: 2330391.609375
[2026-03-10 05:38:01] 2026-03-10 04:36:56,009 | INFO     | intersect: -12128318948.158733
[2026-03-10 05:38:01] 2026-03-10 04:36:56,010 | INFO     | chi2: 1.4140508304594448
[2026-03-10 05:38:01] 2026-03-10 04:36:56,010 | INFO     | sum of square deviations: 2027639878.0
[2026-03-10 05:38:01] 2026-03-10 04:36:56,011 | INFO     | sum of deviations: 14501643765.000002
[2026-03-10 05:38:01] 2026-03-10 04:36:56,011 | INFO     | mean x: 1773111391.0
[2026-03-10 05:38:01] 2026-03-10 04:36:56,012 | INFO     | mean y: 2329923.2352941176
[2026-03-10 05:38:01] 2026-03-10 04:36:56,012 | INFO     | intersect: -12678930702.447483
[2026-03-10 05:38:01] 2026-03-10 04:36:56,012 | INFO     | chi2: 1.4149432050085717
[2026-03-10 05:38:01] 2026-03-10 04:36:56,012 | INFO     | current chi2=1.4149432050085717 (change=-0.06310767123109676 %)
[2026-03-10 05:38:01] 2026-03-10 04:36:56,012 | INFO     | right removable region: 186
[2026-03-10 05:38:01] 2026-03-10 04:36:56,013 | INFO     | sum of square deviations: 2027639878.0
[2026-03-10 05:38:01] 2026-03-10 04:36:56,014 | INFO     | sum of deviations: -11267604629.999998
[2026-03-10 05:38:01] 2026-03-10 04:36:56,014 | INFO     | mean x: 1773111696.0
[2026-03-10 05:38:01] 2026-03-10 04:36:56,014 | INFO     | mean y: 2354094.4331550803
[2026-03-10 05:38:01] 2026-03-10 04:36:56,014 | INFO     | intersect: 9855544383.363125
[2026-03-10 05:38:01] 2026-03-10 04:36:56,015 | INFO     | chi2: 0.029002523321717284
[2026-03-10 05:38:01] 2026-03-10 04:36:56,015 | INFO     | current chi2=0.029002523321717284 (change=97.94897589980596 %)
[2026-03-10 05:38:01] 2026-03-10 04:36:56,015 | INFO     | sum of square deviations: 1869302025.5
[2026-03-10 05:38:01] 2026-03-10 04:36:56,016 | INFO     | sum of deviations: -11658136298.5
[2026-03-10 05:38:01] 2026-03-10 04:36:56,016 | INFO     | mean x: 1773111848.5
[2026-03-10 05:38:01] 2026-03-10 04:36:56,016 | INFO     | mean y: 2354450.763736264
[2026-03-10 05:38:01] 2026-03-10 04:36:56,017 | INFO     | intersect: 11060588658.138098
[2026-03-10 05:38:01] 2026-03-10 04:36:56,017 | INFO     | chi2: 0.024263720599344177
[2026-03-10 05:38:01] 2026-03-10 04:36:56,017 | INFO     | current chi2=0.024263720599344177 (change=16.3392773442739 %)
[2026-03-10 05:38:01] 2026-03-10 04:36:56,017 | INFO     | left removable region: 20
[2026-03-10 05:38:01] 2026-03-10 04:36:56,017 | INFO     | sum of square deviations: 1418361477.5
[2026-03-10 05:38:01] 2026-03-10 04:36:56,018 | INFO     | sum of deviations: -9026835143.999998
[2026-03-10 05:38:01] 2026-03-10 04:36:56,019 | INFO     | mean x: 1773111970.5
[2026-03-10 05:38:01] 2026-03-10 04:36:56,019 | INFO     | mean y: 2351962.9638554216
[2026-03-10 05:38:01] 2026-03-10 04:36:56,019 | INFO     | intersect: 11286914962.917786
[2026-03-10 05:38:01] 2026-03-10 04:36:56,019 | INFO     | chi2: 0.02290239131189822
[2026-03-10 05:38:01] 2026-03-10 04:36:56,019 | INFO     | current memory leak: -6.36 B/s (using 166 data points, chi2=0.02)
[2026-03-10 05:38:01] 2026-03-10 04:36:56,020 | INFO     | could have reported an average CPU frequency of 2589 MHz (10 samples)
[2026-03-10 05:38:01] 2026-03-10 04:36:56,020 | INFO     | ..............................
[2026-03-10 05:38:01] 2026-03-10 04:36:56,020 | INFO     | . Timing measurements:
[2026-03-10 05:38:01] 2026-03-10 04:36:56,020 | INFO     | . get job = 0 s
[2026-03-10 05:38:01] 2026-03-10 04:36:56,020 | INFO     | . initial setup = 5 s
[2026-03-10 05:38:01] 2026-03-10 04:36:56,020 | INFO     | . payload setup = 5 s
[2026-03-10 05:38:01] 2026-03-10 04:36:56,020 | INFO     | . stage-in = 0 s
[2026-03-10 05:38:01] 2026-03-10 04:36:56,021 | INFO     | . payload execution = 11695 s
[2026-03-10 05:38:01] 2026-03-10 04:36:56,021 | INFO     | . stage-out = 1 s
[2026-03-10 05:38:01] 2026-03-10 04:36:56,021 | INFO     | . log creation = 0 s
[2026-03-10 05:38:01] 2026-03-10 04:36:56,021 | INFO     | ..............................
[2026-03-10 05:38:01] 2026-03-10 04:36:56,121 | INFO     | 
[2026-03-10 05:38:01] 2026-03-10 04:36:56,122 | INFO     | job summary report
[2026-03-10 05:38:01] 2026-03-10 04:36:56,122 | INFO     | --------------------------------------------------
[2026-03-10 05:38:01] 2026-03-10 04:36:56,122 | INFO     | PanDA job id: 7046723408
[2026-03-10 05:38:01] 2026-03-10 04:36:56,122 | INFO     | task id: 48958651
[2026-03-10 05:38:01] 2026-03-10 04:36:56,122 | INFO     | errors: (none)
[2026-03-10 05:38:01] 2026-03-10 04:36:56,122 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-10 05:38:01] 2026-03-10 04:36:56,122 | INFO     | pilot state: finished 
[2026-03-10 05:38:01] 2026-03-10 04:36:56,122 | INFO     | transexitcode: 0
[2026-03-10 05:38:01] 2026-03-10 04:36:56,122 | INFO     | exeerrorcode: 0
[2026-03-10 05:38:01] 2026-03-10 04:36:56,122 | INFO     | exeerrordiag: 
[2026-03-10 05:38:01] 2026-03-10 04:36:56,123 | INFO     | exitcode: 0
[2026-03-10 05:38:01] 2026-03-10 04:36:56,123 | INFO     | exitmsg: OK
[2026-03-10 05:38:01] 2026-03-10 04:36:56,123 | INFO     | cpuconsumptiontime: 43631 s
[2026-03-10 05:38:01] 2026-03-10 04:36:56,123 | INFO     | nevents: 400
[2026-03-10 05:38:01] 2026-03-10 04:36:56,123 | INFO     | neventsw: 0
[2026-03-10 05:38:01] 2026-03-10 04:36:56,123 | INFO     | pid: 1853990
[2026-03-10 05:38:01] 2026-03-10 04:36:56,123 | INFO     | pgrp: 1853990
[2026-03-10 05:38:01] 2026-03-10 04:36:56,123 | INFO     | corecount: 4
[2026-03-10 05:38:01] 2026-03-10 04:36:56,123 | INFO     | event service: False
[2026-03-10 05:38:01] 2026-03-10 04:36:56,123 | INFO     | sizes: {0: 2280291, 11: 2280291, 11705: 2309871, 11707: 2318947, 11708: 2319085}
[2026-03-10 05:38:01] 2026-03-10 04:36:56,123 | INFO     | --------------------------------------------------
[2026-03-10 05:38:01] 2026-03-10 04:36:56,123 | INFO     | 
[2026-03-10 05:38:01] 2026-03-10 04:36:56,124 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot16/slots/7
[2026-03-10 05:38:01] 2026-03-10 04:36:56,144 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-10 05:38:01] 2026-03-10 04:36:56,144 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-10 05:38:01] 2026-03-10 04:36:56,144 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-10 05:38:01] 2026-03-10 04:36:56,145 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-10 05:38:01] 2026-03-10 04:36:56,145 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-10 05:38:01] 2026-03-10 04:36:56,145 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-10 05:38:01] 2026-03-10 04:36:56,145 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-10 05:38:01] 2026-03-10 04:36:56,145 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-10 05:38:01] 2026-03-10 04:36:56,145 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-10 05:38:01] 2026-03-10 04:36:56,145 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-10 05:38:01] 2026-03-10 04:36:56,145 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-10 05:38:01] 2026-03-10 04:36:56,145 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-10 05:38:01] 2026-03-10 04:36:56,145 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-10 05:38:01] 2026-03-10 04:36:56,145 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-10 05:38:01] 2026-03-10 04:36:56,145 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-10 05:38:01] 2026-03-10 04:36:56,146 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-10 05:38:01] 2026-03-10 04:36:56,146 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-10 05:38:01] 2026-03-10 04:36:56,146 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-10 05:38:01] 2026-03-10 04:36:56,146 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-10 05:38:01] 2026-03-10 04:36:56,146 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-10 05:38:01] 2026-03-10 04:36:56,146 | INFO     | job 7046723408 has completed (purged errors)
[2026-03-10 05:38:01] 2026-03-10 04:36:56,146 | INFO     | overall cleanup function is called
[2026-03-10 05:38:01] 2026-03-10 04:36:57,153 | INFO     | --- collectZombieJob: --- 10, [1853990]
[2026-03-10 05:38:01] 2026-03-10 04:36:57,154 | INFO     | zombie collector waiting for pid 1853990
[2026-03-10 05:38:01] 2026-03-10 04:36:57,154 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-10 05:38:01] 2026-03-10 04:36:57,154 | INFO     | collected zombie processes
[2026-03-10 05:38:01] 2026-03-10 04:36:57,154 | INFO     | will attempt to kill all subprocesses of pid=1853990
[2026-03-10 05:38:01] 2026-03-10 04:36:57,508 | INFO     | process IDs to be killed: [1853990] (in reverse order)
[2026-03-10 05:38:01] 2026-03-10 04:36:57,637 | WARNING  | found no corresponding commands to process id(s)
[2026-03-10 05:38:01] 2026-03-10 04:36:57,638 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-10 05:38:01] 2026-03-10 04:36:57,649 | INFO     | did not find any defunct processes belonging to 1853990
[2026-03-10 05:38:01] 2026-03-10 04:36:57,661 | INFO     | did not find any defunct processes belonging to 1853990
[2026-03-10 05:38:01] 2026-03-10 04:36:57,661 | INFO     | ready for new job
[2026-03-10 05:38:01] 2026-03-10 04:36:57,661 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-10 05:38:01] 2026-03-10 04:36:57,664 | INFO     | **************************************
[2026-03-10 05:38:01] 2026-03-10 04:36:57,664 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-10 05:38:01] 2026-03-10 04:36:57,664 | INFO     | **************************************
[2026-03-10 05:38:01] 2026-03-10 04:36:57,664 | INFO     | 
[2026-03-10 05:38:01] 2026-03-10 04:36:57,668 | INFO     | architecture information:
[2026-03-10 05:38:01] 2026-03-10 04:36:57,668 | INFO     | executing command: cat /etc/os-release
[2026-03-10 05:38:01] 2026-03-10 04:36:57,683 | INFO     | cat /etc/os-release:
[2026-03-10 05:38:01] NAME="CentOS Linux"
[2026-03-10 05:38:01] VERSION="7 (Core)"
[2026-03-10 05:38:01] ID="centos"
[2026-03-10 05:38:01] ID_LIKE="rhel fedora"
[2026-03-10 05:38:01] VERSION_ID="7"
[2026-03-10 05:38:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-10 05:38:01] ANSI_COLOR="0;31"
[2026-03-10 05:38:01] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-10 05:38:01] HOME_URL="https://www.centos.org/"
[2026-03-10 05:38:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-10 05:38:01] 
[2026-03-10 05:38:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-10 05:38:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-10 05:38:01] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-10 05:38:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-10 05:38:01] 
[2026-03-10 05:38:01] 2026-03-10 04:36:57,683 | INFO     | **************************************
[2026-03-10 05:38:01] 2026-03-10 04:36:58,186 | INFO     | executing command: df -mP /var/lib/boinc/var/slot16/slots/7
[2026-03-10 05:38:01] 2026-03-10 04:36:58,201 | INFO     | sufficient remaining disk space (20462960640 B)
[2026-03-10 05:38:01] 2026-03-10 04:36:58,202 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-10 05:38:01] 2026-03-10 04:36:58,202 | INFO     | current server update state: UPDATING_FINAL
[2026-03-10 05:38:01] 2026-03-10 04:36:58,202 | INFO     | update_server=False
[2026-03-10 05:38:01] 2026-03-10 04:36:58,202 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-10 05:38:01] 2026-03-10 04:36:58,202 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-10 05:38:01] 2026-03-10 04:36:58,203 | INFO     | all payload control threads have been joined
[2026-03-10 05:38:01] 2026-03-10 04:36:58,610 | INFO     | all data control threads have been joined
[2026-03-10 05:38:01] 2026-03-10 04:36:58,677 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-10 05:38:01] 2026-03-10 04:36:58,678 | INFO     | aborting loop
[2026-03-10 05:38:01] 2026-03-10 04:36:58,942 | INFO     | all job control threads have been joined
[2026-03-10 05:38:01] 2026-03-10 04:36:59,207 | INFO     | [job] retrieve thread has finished
[2026-03-10 05:38:01] 2026-03-10 04:36:59,209 | INFO     | [payload] control thread has finished
[2026-03-10 05:38:01] 2026-03-10 04:36:59,494 | INFO     | [job] create_data_payload thread has finished
[2026-03-10 05:38:01] 2026-03-10 04:36:59,508 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-10 05:38:01] 2026-03-10 04:36:59,521 | INFO     | [job] validate thread has finished
[2026-03-10 05:38:01] 2026-03-10 04:36:59,616 | INFO     | [data] control thread has finished
[2026-03-10 05:38:01] 2026-03-10 04:36:59,683 | INFO     | [job] job monitor thread has finished
[2026-03-10 05:38:01] 2026-03-10 04:36:59,698 | INFO     | [payload] execute_payloads thread has finished
[2026-03-10 05:38:01] 2026-03-10 04:36:59,948 | INFO     | [job] control thread has finished
[2026-03-10 05:38:01] 2026-03-10 04:37:00,083 | INFO     | [payload] validate_pre thread has finished
[2026-03-10 05:38:01] 2026-03-10 04:37:00,208 | INFO     | [data] copytool_out thread has finished
[2026-03-10 05:38:01] 2026-03-10 04:37:00,326 | INFO     | [data] copytool_in thread has finished
[2026-03-10 05:38:01] 2026-03-10 04:37:00,610 | INFO     | [payload] failed_post thread has finished
[2026-03-10 05:38:01] 2026-03-10 04:37:00,749 | INFO     | [payload] validate_post thread has finished
[2026-03-10 05:38:01] 2026-03-10 04:37:01,063 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-10 05:38:01] 2026-03-10 04:37:01,131 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-10 05:38:01] 2026-03-10 04:37:02,137 | INFO     | [job] queue monitor thread has finished
[2026-03-10 05:38:01] 2026-03-10 04:37:05,068 | INFO     | [data] queue_monitor thread has finished
[2026-03-10 05:38:01] 2026-03-10 04:37:28,995 | INFO     | PID=1843214 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-10 05:38:01] 2026-03-10 04:37:28,995 | INFO     | .. there are 15 such processes running
[2026-03-10 05:38:01] 2026-03-10 04:37:28,995 | INFO     | found 0 job(s) in 20 queues
[2026-03-10 05:38:01] 2026-03-10 04:37:28,995 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-10 05:38:01] 2026-03-10 04:37:28,995 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-10 05:38:01] 2026-03-10 04:37:55,823 | INFO     | [monitor] cgroup control has ended
[2026-03-10 05:38:01] 2026-03-10 04:37:55,872 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23005498730304)>', '<ExcThread(monitor, started 23005184911104)>']
[2026-03-10 05:38:01] 2026-03-10 04:37:56,129 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-10 05:38:01] 2026-03-10 04:37:56,130 | INFO     | [monitor] control thread has ended
[2026-03-10 05:38:01] 2026-03-10 04:38:00,898 | INFO     | all workflow threads have been joined
[2026-03-10 05:38:01] 2026-03-10 04:38:00,898 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-10 05:38:01] 2026-03-10 04:38:00,898 | INFO     | traces error code: 0
[2026-03-10 05:38:01] 2026-03-10 04:38:00,899 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-10 05:38:01] 2026-03-10 04:38:01,052 [wrapper] ==== pilot stdout END ====
[2026-03-10 05:38:01] 2026-03-10 04:38:01,055 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-10 05:38:01] 2026-03-10 04:38:01,058 [wrapper] pilotpid: 1843214
[2026-03-10 05:38:01] 2026-03-10 04:38:01,060 [wrapper] Pilot exit status: 0
[2026-03-10 05:38:01] 2026-03-10 04:38:01,072 [wrapper] pandaids: 7046723408
[2026-03-10 05:38:01] 2026-03-10 04:38:01,149 [wrapper] cleanup supervisor_pilot 2142077 1843215
[2026-03-10 05:38:01] 2026-03-10 04:38:01,152 [wrapper] Test setup, not cleaning
[2026-03-10 05:38:01] 2026-03-10 04:38:01,155 [wrapper] apfmon messages muted
[2026-03-10 05:38:01] 2026-03-10 04:38:01,158 [wrapper] ==== wrapper stdout END ====
[2026-03-10 05:38:01] 2026-03-10 04:38:01,161 [wrapper] ==== wrapper stderr END ====
[2026-03-10 05:38:01]  *** Error codes and diagnostics ***
[2026-03-10 05:38:01]     "exeErrorCode": 0,
[2026-03-10 05:38:01]     "exeErrorDiag": "",
[2026-03-10 05:38:01]     "pilotErrorCode": 0,
[2026-03-10 05:38:01]     "pilotErrorDiag": "",
[2026-03-10 05:38:01]  *** Listing of results directory ***
[2026-03-10 05:38:01] total 434692
[2026-03-10 05:38:01] -rw-r--r--. 1 boinc boinc    584627 Mar  9 03:53 pilot3.tar.gz
[2026-03-10 05:38:01] -rwx------. 1 boinc boinc     36322 Mar  9 03:56 runpilot2-wrapper.sh
[2026-03-10 05:38:01] -rw-r--r--. 1 boinc boinc      5111 Mar  9 03:56 queuedata.json
[2026-03-10 05:38:01] -rw-r--r--. 1 boinc boinc       100 Mar 10 02:21 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-10 05:38:01] -rwxr-xr-x. 1 boinc boinc      7986 Mar 10 02:21 run_atlas
[2026-03-10 05:38:01] -rw-r--r--. 1 boinc boinc       105 Mar 10 02:21 job.xml
[2026-03-10 05:38:01] -rw-r--r--. 2 boinc boinc 259594248 Mar 10 02:21 EVNT.48958649._000079.pool.root.1
[2026-03-10 05:38:01] -rw-r--r--. 1 boinc boinc      6561 Mar 10 02:21 init_data.xml
[2026-03-10 05:38:01] -rw-r--r--. 2 boinc boinc     15845 Mar 10 02:21 start_atlas.sh
[2026-03-10 05:38:01] drwxrwx--x. 2 boinc boinc      4096 Mar 10 02:21 shared
[2026-03-10 05:38:01] -rw-r--r--. 2 boinc boinc    597979 Mar 10 02:21 input.tar.gz
[2026-03-10 05:38:01] -rw-r--r--. 1 boinc boinc         0 Mar 10 02:21 boinc_lockfile
[2026-03-10 05:38:01] -rw-r--r--. 1 boinc boinc      2620 Mar 10 02:21 pandaJob.out
[2026-03-10 05:38:01] -rw-------. 1 boinc boinc   1002338 Mar 10 02:21 agis_schedconf.cvmfs.json
[2026-03-10 05:38:01] -rw-------. 1 boinc boinc       448 Mar 10 02:21 workernode_map.json
[2026-03-10 05:38:01] drwx------. 5 boinc boinc      4096 Mar 10 02:21 pilot3
[2026-03-10 05:38:01] -rw-------. 1 boinc boinc 177576159 Mar 10 05:36 HITS.48958651._002042.pool.root.1
[2026-03-10 05:38:01] -rw-r--r--. 1 boinc boinc       531 Mar 10 05:36 boinc_task_state.xml
[2026-03-10 05:38:01] -rw-------. 1 boinc boinc      1034 Mar 10 05:36 memory_monitor_summary.json
[2026-03-10 05:38:01] -rw-------. 1 boinc boinc        95 Mar 10 05:36 pilot_heartbeat.json
[2026-03-10 05:38:01] -rw-------. 1 boinc boinc   1511578 Mar 10 05:36 agis_ddmendpoints.agis.ALL.json
[2026-03-10 05:38:01] -rw-------. 1 boinc boinc    361789 Mar 10 05:36 log.48958651._002042.job.log.tgz.1
[2026-03-10 05:38:01] -rw-------. 1 boinc boinc      6399 Mar 10 05:36 heartbeat.json
[2026-03-10 05:38:01] -rw-r--r--. 1 boinc boinc      8192 Mar 10 05:37 boinc_mmap_file
[2026-03-10 05:38:01] -rw-r--r--. 1 boinc boinc        28 Mar 10 05:37 wrapper_checkpoint.txt
[2026-03-10 05:38:01] -rw-------. 1 boinc boinc      4829 Mar 10 05:38 pilotlog.txt
[2026-03-10 05:38:01] -rw-------. 1 boinc boinc   1649513 Mar 10 05:38 log.48958651._002042.job.log.1
[2026-03-10 05:38:01] -rw-------. 1 boinc boinc       357 Mar 10 05:38 output.list
[2026-03-10 05:38:01] -rw-r--r--. 1 boinc boinc       620 Mar 10 05:38 runtime_log
[2026-03-10 05:38:01] -rw-------. 1 boinc boinc   2027520 Mar 10 05:38 result.tar.gz
[2026-03-10 05:38:01] -rw-r--r--. 1 boinc boinc      9205 Mar 10 05:38 runtime_log.err
[2026-03-10 05:38:01] -rw-------. 1 boinc boinc       664 Mar 10 05:38 Dn8NDm5xfJ9n9Rq4apOajLDm4fhM0noT9bVooX4SDmiaYLDmU3QnNo.diag
[2026-03-10 05:38:01] -rw-r--r--. 1 boinc boinc     21112 Mar 10 05:38 stderr.txt
[2026-03-10 05:38:01] HITS file was successfully produced:
[2026-03-10 05:38:01] -rw-------. 1 boinc boinc 177576159 Mar 10 05:36 shared/HITS.pool.root.1
[2026-03-10 05:38:01]  *** Contents of shared directory: ***
[2026-03-10 05:38:01] total 429516
[2026-03-10 05:38:01] -rw-r--r--. 2 boinc boinc 259594248 Mar 10 02:21 ATLAS.root_0
[2026-03-10 05:38:01] -rw-r--r--. 2 boinc boinc     15845 Mar 10 02:21 start_atlas.sh
[2026-03-10 05:38:01] -rw-r--r--. 2 boinc boinc    597979 Mar 10 02:21 input.tar.gz
[2026-03-10 05:38:01] -rw-------. 1 boinc boinc 177576159 Mar 10 05:36 HITS.pool.root.1
[2026-03-10 05:38:01] -rw-------. 1 boinc boinc   2027520 Mar 10 05:38 result.tar.gz
05:38:02 (1839427): run_atlas exited; CPU time 44057.266524
05:38:02 (1839427): called boinc_finish(0)

</stderr_txt>
]]>

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