Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:37:50 (2631002): wrapper (7.7.26015): starting
03:37:50 (2631002): wrapper: running run_atlas (--nthreads 3)
[2026-03-10 03:37:50] Arguments: --nthreads 3
[2026-03-10 03:37:50] Threads: 3
[2026-03-10 03:37:50] Checking for CVMFS
[2026-03-10 03:37:50] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-10 03:37:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-10 03:37:51] Running cvmfs_config stat atlas.cern.ch
[2026-03-10 03:37:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-10 03:37:51] 2.9.2.0 34296 18076 90060 157098 1 49 24052947 36864001 0 130560 0 6851872 99.981 672586 13658 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-10 03:37:51] CVMFS is ok
[2026-03-10 03:37:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-10 03:37:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-10 03:37:51] Further information can be found at the LHC@home message board.
[2026-03-10 03:37:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-10 03:37:51] Checking for apptainer binary...
[2026-03-10 03:37:51] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-10 03:37:51] Running /usr/bin/apptainer --version
[2026-03-10 03:37:51] apptainer version 1.4.1-1.1
[2026-03-10 03:37:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-10 03:37:51] cosA127
[2026-03-10 03:37:51] apptainer works
[2026-03-10 03:37:51] Set ATHENA_PROC_NUMBER=3
[2026-03-10 03:37:51] Set ATHENA_CORE_NUMBER=3
[2026-03-10 03:37:51] Starting ATLAS job with PandaID=7040191780
[2026-03-10 03:37:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-10 04:54:20]  *** The last 200 lines of the pilot log: ***
[2026-03-10 04:54:20] 2026-03-10 03:53:49,346 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-10 04:54:20] 2026-03-10 03:53:49,346 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-10 04:54:20] 2026-03-10 03:53:49,347 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-10 04:54:20] 2026-03-10 03:53:49,347 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-10 04:54:20] 2026-03-10 03:53:49,347 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-10 04:54:20] 2026-03-10 03:53:49,347 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-10 04:54:20] 2026-03-10 03:53:49,347 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-10 04:54:20] 2026-03-10 03:53:49,347 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-10 04:54:20] 2026-03-10 03:53:49,347 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-10 04:54:20] 2026-03-10 03:53:49,347 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-10 04:54:20] 2026-03-10 03:53:49,347 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-10 04:54:20] 2026-03-10 03:53:49,347 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-10 04:54:20] 2026-03-10 03:53:49,347 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-10 04:54:20] 2026-03-10 03:53:49,347 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-10 04:54:20] 2026-03-10 03:53:49,347 | INFO     | job 7040191780 has completed (purged errors)
[2026-03-10 04:54:20] 2026-03-10 03:53:49,347 | INFO     | overall cleanup function is called
[2026-03-10 04:54:20] 2026-03-10 03:53:50,354 | INFO     | --- collectZombieJob: --- 10, [2639454]
[2026-03-10 04:54:20] 2026-03-10 03:53:50,355 | INFO     | zombie collector waiting for pid 2639454
[2026-03-10 04:54:20] 2026-03-10 03:53:50,355 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-10 04:54:20] 2026-03-10 03:53:50,355 | INFO     | collected zombie processes
[2026-03-10 04:54:20] 2026-03-10 03:53:50,355 | INFO     | will attempt to kill all subprocesses of pid=2639454
[2026-03-10 04:54:20] 2026-03-10 03:53:50,402 | INFO     | process IDs to be killed: [2639454] (in reverse order)
[2026-03-10 04:54:20] 2026-03-10 03:53:50,428 | WARNING  | found no corresponding commands to process id(s)
[2026-03-10 04:54:20] 2026-03-10 03:53:50,428 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-10 04:54:20] 2026-03-10 03:53:50,429 | INFO     | did not find any defunct processes belonging to 2639454
[2026-03-10 04:54:20] 2026-03-10 03:53:50,431 | INFO     | did not find any defunct processes belonging to 2639454
[2026-03-10 04:54:20] 2026-03-10 03:53:50,431 | INFO     | ready for new job
[2026-03-10 04:54:20] 2026-03-10 03:53:50,431 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-10 04:54:20] 2026-03-10 03:53:50,431 | INFO     | **************************************
[2026-03-10 04:54:20] 2026-03-10 03:53:50,431 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-10 04:54:20] 2026-03-10 03:53:50,431 | INFO     | **************************************
[2026-03-10 04:54:20] 2026-03-10 03:53:50,431 | INFO     | 
[2026-03-10 04:54:20] 2026-03-10 03:53:50,432 | INFO     | architecture information:
[2026-03-10 04:54:20] 2026-03-10 03:53:50,432 | INFO     | executing command: cat /etc/os-release
[2026-03-10 04:54:20] 2026-03-10 03:53:50,440 | INFO     | cat /etc/os-release:
[2026-03-10 04:54:20] NAME="CentOS Linux"
[2026-03-10 04:54:20] VERSION="7 (Core)"
[2026-03-10 04:54:20] ID="centos"
[2026-03-10 04:54:20] ID_LIKE="rhel fedora"
[2026-03-10 04:54:20] VERSION_ID="7"
[2026-03-10 04:54:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-10 04:54:20] ANSI_COLOR="0;31"
[2026-03-10 04:54:20] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-10 04:54:20] HOME_URL="https://www.centos.org/"
[2026-03-10 04:54:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-10 04:54:20] 
[2026-03-10 04:54:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-10 04:54:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-10 04:54:20] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-10 04:54:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-10 04:54:20] 
[2026-03-10 04:54:20] 2026-03-10 03:53:50,441 | INFO     | **************************************
[2026-03-10 04:54:20] 2026-03-10 03:53:50,944 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-10 04:54:20] 2026-03-10 03:53:50,958 | INFO     | sufficient remaining disk space (332092407808 B)
[2026-03-10 04:54:20] 2026-03-10 03:53:50,958 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-10 04:54:20] 2026-03-10 03:53:50,958 | INFO     | current server update state: UPDATING_FINAL
[2026-03-10 04:54:20] 2026-03-10 03:53:50,958 | INFO     | update_server=False
[2026-03-10 04:54:20] 2026-03-10 03:53:50,958 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-10 04:54:20] 2026-03-10 03:53:50,958 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-10 04:54:20] 2026-03-10 03:53:50,958 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-10 04:54:20] 2026-03-10 03:53:50,958 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-10 04:54:20] 2026-03-10 03:53:50,959 | INFO     | aborting loop
[2026-03-10 04:54:20] 2026-03-10 03:53:51,396 | INFO     | job.realtimelogging is not enabled
[2026-03-10 04:54:20] 2026-03-10 03:53:51,589 | INFO     | all data control threads have been joined
[2026-03-10 04:54:20] 2026-03-10 03:53:51,964 | INFO     | [job] queue monitor thread has finished
[2026-03-10 04:54:20] 2026-03-10 03:53:51,964 | INFO     | [job] retrieve thread has finished
[2026-03-10 04:54:20] 2026-03-10 03:53:51,964 | INFO     | [job] job monitor thread has finished
[2026-03-10 04:54:20] 2026-03-10 03:53:51,995 | INFO     | [payload] validate_pre thread has finished
[2026-03-10 04:54:20] 2026-03-10 03:53:52,092 | INFO     | [data] copytool_in thread has finished
[2026-03-10 04:54:20] 2026-03-10 03:53:52,229 | INFO     | all payload control threads have been joined
[2026-03-10 04:54:20] 2026-03-10 03:53:52,375 | INFO     | [payload] validate_post thread has finished
[2026-03-10 04:54:20] 2026-03-10 03:53:52,388 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-10 04:54:20] 2026-03-10 03:53:52,402 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-10 04:54:20] 2026-03-10 03:53:52,423 | INFO     | all job control threads have been joined
[2026-03-10 04:54:20] 2026-03-10 03:53:52,570 | INFO     | [payload] failed_post thread has finished
[2026-03-10 04:54:20] 2026-03-10 03:53:52,595 | INFO     | [data] control thread has finished
[2026-03-10 04:54:20] 2026-03-10 03:53:52,964 | INFO     | [data] copytool_out thread has finished
[2026-03-10 04:54:20] 2026-03-10 03:53:53,235 | INFO     | [payload] control thread has finished
[2026-03-10 04:54:20] 2026-03-10 03:53:53,349 | INFO     | [job] validate thread has finished
[2026-03-10 04:54:20] 2026-03-10 03:53:53,428 | INFO     | [job] control thread has finished
[2026-03-10 04:54:20] 2026-03-10 03:53:53,448 | INFO     | [payload] execute_payloads thread has finished
[2026-03-10 04:54:20] 2026-03-10 03:53:53,457 | INFO     | [job] create_data_payload thread has finished
[2026-03-10 04:54:20] 2026-03-10 03:53:56,395 | INFO     | [data] queue_monitor thread has finished
[2026-03-10 04:54:20] 2026-03-10 03:54:05,149 | INFO     | [monitor] cgroup control has ended
[2026-03-10 04:54:20] 2026-03-10 03:54:06,154 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140505694975808)>', '<ExcThread(monitor, started 140504620594944)>']
[2026-03-10 04:54:20] 2026-03-10 03:54:11,180 | INFO     | all workflow threads have been joined
[2026-03-10 04:54:20] 2026-03-10 03:54:11,180 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-10 04:54:20] 2026-03-10 03:54:11,181 | INFO     | traces error code: 0
[2026-03-10 04:54:20] 2026-03-10 03:54:11,181 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-10 04:54:20] 2026-03-10 03:54:20,634 | INFO     | PID=2635037 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-10 04:54:20] 2026-03-10 03:54:20,634 | INFO     | found 0 job(s) in 20 queues
[2026-03-10 04:54:20] 2026-03-10 03:54:20,634 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-10 04:54:20] 2026-03-10 03:54:20,634 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-10 04:54:20] 2026-03-10 03:54:20,634 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-10 04:54:20] 2026-03-10 03:54:20,634 | CRITICAL | thread 'MainThread' is not alive
[2026-03-10 04:54:20] 2026-03-10 03:54:20,634 | INFO     | [monitor] control thread has ended
[2026-03-10 04:54:20] 2026-03-10 03:54:20,681 [wrapper] ==== pilot stdout END ====
[2026-03-10 04:54:20] 2026-03-10 03:54:20,683 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-10 04:54:20] 2026-03-10 03:54:20,685 [wrapper] pilotpid: 2635037
[2026-03-10 04:54:20] 2026-03-10 03:54:20,688 [wrapper] Pilot exit status: 0
[2026-03-10 04:54:20] 2026-03-10 03:54:20,695 [wrapper] pandaids: 7040191780
[2026-03-10 04:54:20] 2026-03-10 03:54:20,712 [wrapper] cleanup supervisor_pilot 2644829 2635038
[2026-03-10 04:54:20] 2026-03-10 03:54:20,714 [wrapper] Test setup, not cleaning
[2026-03-10 04:54:20] 2026-03-10 03:54:20,717 [wrapper] apfmon messages muted
[2026-03-10 04:54:20] 2026-03-10 03:54:20,719 [wrapper] ==== wrapper stdout END ====
[2026-03-10 04:54:20] 2026-03-10 03:54:20,721 [wrapper] ==== wrapper stderr END ====
[2026-03-10 04:54:20]  *** Error codes and diagnostics ***
[2026-03-10 04:54:20]     "exeErrorCode": 0,
[2026-03-10 04:54:20]     "exeErrorDiag": "",
[2026-03-10 04:54:20]     "pilotErrorCode": 0,
[2026-03-10 04:54:20]     "pilotErrorDiag": "",
[2026-03-10 04:54:20]  *** Listing of results directory ***
[2026-03-10 04:54:20] total 613080
[2026-03-10 04:54:20] -rw-r--r-- 1 boinc boinc    584627 Mar  8 20:47 pilot3.tar.gz
[2026-03-10 04:54:20] -rwx------ 1 boinc boinc     36322 Mar  8 21:27 runpilot2-wrapper.sh
[2026-03-10 04:54:20] -rw-r--r-- 1 boinc boinc      5111 Mar  8 21:27 queuedata.json
[2026-03-10 04:54:20] -rw-r--r-- 1 boinc boinc       100 Mar 10 03:37 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-10 04:54:20] -rwxr-xr-x 1 boinc boinc      7986 Mar 10 03:37 run_atlas
[2026-03-10 04:54:20] -rw-r--r-- 1 boinc boinc       105 Mar 10 03:37 job.xml
[2026-03-10 04:54:20] -rw-r--r-- 2 boinc boinc 439266235 Mar 10 03:37 EVNT.46701403._000596.pool.root.1
[2026-03-10 04:54:20] -rw-r--r-- 2 boinc boinc    597958 Mar 10 03:37 input.tar.gz
[2026-03-10 04:54:20] -rw-r--r-- 2 boinc boinc     15845 Mar 10 03:37 start_atlas.sh
[2026-03-10 04:54:20] drwxrwx--x 2 boinc boinc      4096 Mar 10 03:37 shared
[2026-03-10 04:54:20] -rw-r--r-- 1 boinc boinc         0 Mar 10 03:37 boinc_setup_complete
[2026-03-10 04:54:20] -rw-r--r-- 1 boinc boinc      6440 Mar 10 03:37 init_data.xml
[2026-03-10 04:54:20] -rw-r--r-- 1 boinc boinc         0 Mar 10 03:37 boinc_lockfile
[2026-03-10 04:54:20] -rw-r--r-- 1 boinc boinc      2565 Mar 10 03:37 pandaJob.out
[2026-03-10 04:54:20] -rw------- 1 boinc boinc   1002338 Mar 10 03:37 agis_schedconf.cvmfs.json
[2026-03-10 04:54:20] -rw------- 1 boinc boinc   1511578 Mar 10 03:37 agis_ddmendpoints.agis.ALL.json
[2026-03-10 04:54:20] -rw------- 1 boinc boinc       428 Mar 10 03:38 workernode_map.json
[2026-03-10 04:54:20] drwx------ 5 boinc boinc      4096 Mar 10 03:38 pilot3
[2026-03-10 04:54:20] -rw------- 1 boinc boinc        95 Mar 10 04:53 pilot_heartbeat.json
[2026-03-10 04:54:20] -rw------- 1 boinc boinc 182694204 Mar 10 04:53 HITS.48955006._029812.pool.root.1
[2026-03-10 04:54:20] -rw-r--r-- 1 boinc boinc       530 Mar 10 04:53 boinc_task_state.xml
[2026-03-10 04:54:20] -rw------- 1 boinc boinc      1021 Mar 10 04:53 memory_monitor_summary.json
[2026-03-10 04:54:20] -rw------- 1 boinc boinc    282862 Mar 10 04:53 log.48955006._029812.job.log.tgz.1
[2026-03-10 04:54:20] -rw------- 1 boinc boinc      6320 Mar 10 04:53 heartbeat.json
[2026-03-10 04:54:20] -rw-r--r-- 1 boinc boinc        27 Mar 10 04:53 wrapper_checkpoint.txt
[2026-03-10 04:54:20] -rw-r--r-- 1 boinc boinc      8192 Mar 10 04:53 boinc_mmap_file
[2026-03-10 04:54:20] -rw------- 1 boinc boinc       817 Mar 10 04:54 pilotlog.txt
[2026-03-10 04:54:20] -rw------- 1 boinc boinc    670306 Mar 10 04:54 log.48955006._029812.job.log.1
[2026-03-10 04:54:20] -rw------- 1 boinc boinc       357 Mar 10 04:54 output.list
[2026-03-10 04:54:20] -rw-r--r-- 1 boinc boinc       620 Mar 10 04:54 runtime_log
[2026-03-10 04:54:20] -rw------- 1 boinc boinc    972800 Mar 10 04:54 result.tar.gz
[2026-03-10 04:54:20] -rw-r--r-- 1 boinc boinc      8901 Mar 10 04:54 runtime_log.err
[2026-03-10 04:54:20] -rw------- 1 boinc boinc       658 Mar 10 04:54 KPlLDmWtZJ9n9Rq4apOajLDm4fhM0noT9bVooX4SDmhrXLDmP17b8n.diag
[2026-03-10 04:54:20] -rw-r--r-- 1 boinc boinc     12430 Mar 10 04:54 stderr.txt
[2026-03-10 04:54:20] HITS file was successfully produced:
[2026-03-10 04:54:20] -rw------- 1 boinc boinc 182694204 Mar 10 04:53 shared/HITS.pool.root.1
[2026-03-10 04:54:20]  *** Contents of shared directory: ***
[2026-03-10 04:54:20] total 608948
[2026-03-10 04:54:20] -rw-r--r-- 2 boinc boinc 439266235 Mar 10 03:37 ATLAS.root_0
[2026-03-10 04:54:20] -rw-r--r-- 2 boinc boinc    597958 Mar 10 03:37 input.tar.gz
[2026-03-10 04:54:20] -rw-r--r-- 2 boinc boinc     15845 Mar 10 03:37 start_atlas.sh
[2026-03-10 04:54:20] -rw------- 1 boinc boinc 182694204 Mar 10 04:53 HITS.pool.root.1
[2026-03-10 04:54:20] -rw------- 1 boinc boinc    972800 Mar 10 04:54 result.tar.gz
04:54:43 (2631002): run_atlas exited; CPU time 12922.592525
04:54:43 (2631002): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN