Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:00 (1661651): wrapper (7.7.26015): starting
00:02:00 (1661651): wrapper: running run_atlas (--nthreads 8)
[2026-03-09 00:02:00] Arguments: --nthreads 8
[2026-03-09 00:02:00] Threads: 8
[2026-03-09 00:02:00] Checking for CVMFS
[2026-03-09 00:02:01] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-09 00:02:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-09 00:02:02] Running cvmfs_config stat atlas.cern.ch
[2026-03-09 00:02:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-09 00:02:02] 2.13.3.0 8980 177867 348656 157063 2 297 22731912 32935936 25123 16776704 0 777342718 99.697 600306651 33174 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-03-09 00:02:02] CVMFS is ok
[2026-03-09 00:02:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-09 00:02:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-09 00:02:02] Further information can be found at the LHC@home message board.
[2026-03-09 00:02:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-09 00:02:02] Checking for apptainer binary...
[2026-03-09 00:02:02] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-09 00:02:02] Running /usr/bin/apptainer --version
[2026-03-09 00:02:02] apptainer version 1.4.5-2.el9
[2026-03-09 00:02:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-09 00:02:03] c-5-4.aglt2.org
[2026-03-09 00:02:03] apptainer works
[2026-03-09 00:02:03] Set ATHENA_PROC_NUMBER=8
[2026-03-09 00:02:03] Set ATHENA_CORE_NUMBER=8
[2026-03-09 00:02:03] Starting ATLAS job with PandaID=7040267733
[2026-03-09 00:02:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-09 17:40:24]  *** The last 200 lines of the pilot log: ***
[2026-03-09 17:40:24] 2026-03-09 21:39:43,146 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-7040267733/jobReport.json
[2026-03-09 17:40:24] 2026-03-09 21:39:43,149 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-03-09 17:40:24] 2026-03-09 21:39:43,155 | INFO     | this job has now completed (state=finished)
[2026-03-09 17:40:24] 2026-03-09 21:39:43,156 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-09 17:40:24] 2026-03-09 21:39:43,156 | INFO     | log transfer has been attempted: DONE
[2026-03-09 17:40:24] 2026-03-09 21:39:43,156 | INFO     | job 7040267733 has finished - writing final server update
[2026-03-09 17:40:24] 2026-03-09 21:39:43,156 | INFO     | total number of processed events: 400 (read)
[2026-03-09 17:40:24] 2026-03-09 21:39:43,158 | INFO     | time since job start (63237s) is within the limit (349056.0s)
[2026-03-09 17:40:24] 2026-03-09 21:39:43,178 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7040267733/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 17:40:24] 2026-03-09 21:39:43,187 | INFO     | extracted standard info from prmon json
[2026-03-09 17:40:24] 2026-03-09 21:39:43,187 | INFO     | extracted standard memory fields from prmon json
[2026-03-09 17:40:24] 2026-03-09 21:39:43,187 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-09 17:40:24] 2026-03-09 21:39:43,191 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-09 17:40:24] 2026-03-09 21:39:43,192 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-09 17:40:24] 2026-03-09 21:39:43,250 | INFO     | fitting pss+swap vs Time
[2026-03-09 17:40:24] 2026-03-09 21:39:43,252 | INFO     | sum of square deviations: 342773240866.6553
[2026-03-09 17:40:24] 2026-03-09 21:39:43,336 | INFO     | monitor loop #2581: job 0:7040267733 is in state 'finished'
[2026-03-09 17:40:24] 2026-03-09 21:39:43,337 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-09 17:40:24] 2026-03-09 21:39:43,539 | INFO     | sum of deviations: 2081764765575.2524
[2026-03-09 17:40:24] 2026-03-09 21:39:43,539 | INFO     | mean x: 1773060811.3762088
[2026-03-09 17:40:24] 2026-03-09 21:39:43,539 | INFO     | mean y: 2437445.595744681
[2026-03-09 17:40:24] 2026-03-09 21:39:43,540 | INFO     | intersect: -10765892996.456352
[2026-03-09 17:40:24] 2026-03-09 21:39:43,541 | INFO     | chi2: 13.859775982026276
[2026-03-09 17:40:24] 2026-03-09 21:39:43,621 | INFO     | sum of square deviations: 337824867507.23236
[2026-03-09 17:40:24] 2026-03-09 21:39:43,703 | INFO     | sum of deviations: 2263376609693.232
[2026-03-09 17:40:24] 2026-03-09 21:39:43,703 | INFO     | mean x: 1773060658.8843536
[2026-03-09 17:40:24] 2026-03-09 21:39:43,703 | INFO     | mean y: 2443030.2876579203
[2026-03-09 17:40:24] 2026-03-09 21:39:43,703 | INFO     | intersect: -11876800947.511581
[2026-03-09 17:40:24] 2026-03-09 21:39:43,705 | INFO     | chi2: 11.793061331114766
[2026-03-09 17:40:24] 2026-03-09 21:39:43,705 | INFO     | current chi2=11.793061331114766 (change=14.911602132615137 %)
[2026-03-09 17:40:24] 2026-03-09 21:39:43,714 | INFO     | right removable region: 1028
[2026-03-09 17:40:24] 2026-03-09 21:39:43,719 | INFO     | sum of square deviations: 337823872844.0069
[2026-03-09 17:40:24] 2026-03-09 21:39:43,882 | INFO     | sum of deviations: 1738964282995.794
[2026-03-09 17:40:24] 2026-03-09 21:39:43,883 | INFO     | mean x: 1773060963.8833818
[2026-03-09 17:40:24] 2026-03-09 21:39:43,883 | INFO     | mean y: 2448005.7482993198
[2026-03-09 17:40:24] 2026-03-09 21:39:43,883 | INFO     | intersect: -9124466743.675085
[2026-03-09 17:40:24] 2026-03-09 21:39:43,884 | INFO     | chi2: 9.703332642141257
[2026-03-09 17:40:24] 2026-03-09 21:39:43,884 | INFO     | current chi2=9.703332642141257 (change=29.989253399731748 %)
[2026-03-09 17:40:24] 2026-03-09 21:39:43,930 | INFO     | sum of square deviations: 332922617630.8472
[2026-03-09 17:40:24] 2026-03-09 21:39:44,333 | INFO     | sum of deviations: 1476444424818.924
[2026-03-09 17:40:24] 2026-03-09 21:39:44,334 | INFO     | mean x: 1773061116.3867188
[2026-03-09 17:40:24] 2026-03-09 21:39:44,334 | INFO     | mean y: 2456173.2529296875
[2026-03-09 17:40:24] 2026-03-09 21:39:44,334 | INFO     | intersect: -7860711005.899489
[2026-03-09 17:40:24] 2026-03-09 21:39:44,402 | INFO     | chi2: 7.40477108502748
[2026-03-09 17:40:24] 2026-03-09 21:39:44,402 | INFO     | current chi2=7.40477108502748 (change=23.68837225193331 %)
[2026-03-09 17:40:24] 2026-03-09 21:39:44,402 | INFO     | left removable region: 20
[2026-03-09 17:40:24] 2026-03-09 21:39:44,403 | INFO     | sum of square deviations: 317558172267.0463
[2026-03-09 17:40:24] 2026-03-09 21:39:44,508 | INFO     | sum of deviations: 1255075737070.0288
[2026-03-09 17:40:24] 2026-03-09 21:39:44,508 | INFO     | mean x: 1773061238.4057539
[2026-03-09 17:40:24] 2026-03-09 21:39:44,508 | INFO     | mean y: 2474693.6845238097
[2026-03-09 17:40:24] 2026-03-09 21:39:44,508 | INFO     | intersect: -7005142602.938034
[2026-03-09 17:40:24] 2026-03-09 21:39:44,516 | INFO     | chi2: 2.6493968431616692
[2026-03-09 17:40:24] 2026-03-09 21:39:44,517 | INFO     | current memory leak: 3.95 B/s (using 1008 data points, chi2=2.65)
[2026-03-09 17:40:24] 2026-03-09 21:39:44,518 | INFO     | could have reported an average CPU frequency of 2600 MHz (38 samples)
[2026-03-09 17:40:24] 2026-03-09 21:39:44,518 | INFO     | ..............................
[2026-03-09 17:40:24] 2026-03-09 21:39:44,518 | INFO     | . Timing measurements:
[2026-03-09 17:40:24] 2026-03-09 21:39:44,518 | INFO     | . get job = 0 s
[2026-03-09 17:40:24] 2026-03-09 21:39:44,532 | INFO     | . initial setup = 82 s
[2026-03-09 17:40:24] 2026-03-09 21:39:44,532 | INFO     | . payload setup = 75 s
[2026-03-09 17:40:24] 2026-03-09 21:39:44,532 | INFO     | . stage-in = 1 s
[2026-03-09 17:40:24] 2026-03-09 21:39:44,532 | INFO     | . payload execution = 63129 s
[2026-03-09 17:40:24] 2026-03-09 21:39:44,532 | INFO     | . stage-out = 13 s
[2026-03-09 17:40:24] 2026-03-09 21:39:44,532 | INFO     | . log creation = 4 s
[2026-03-09 17:40:24] 2026-03-09 21:39:44,532 | INFO     | ..............................
[2026-03-09 17:40:24] 2026-03-09 21:39:45,232 | INFO     | time since job start (63239s) is within the limit (349056.0s)
[2026-03-09 17:40:24] 2026-03-09 21:39:45,235 | INFO     | 
[2026-03-09 17:40:24] 2026-03-09 21:39:45,235 | INFO     | job summary report
[2026-03-09 17:40:24] 2026-03-09 21:39:45,236 | INFO     | --------------------------------------------------
[2026-03-09 17:40:24] 2026-03-09 21:39:45,236 | INFO     | PanDA job id: 7040267733
[2026-03-09 17:40:24] 2026-03-09 21:39:45,236 | INFO     | task id: 48955006
[2026-03-09 17:40:24] 2026-03-09 21:39:45,236 | INFO     | errors: (none)
[2026-03-09 17:40:24] 2026-03-09 21:39:45,236 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-09 17:40:24] 2026-03-09 21:39:45,236 | INFO     | pilot state: finished 
[2026-03-09 17:40:24] 2026-03-09 21:39:45,236 | INFO     | transexitcode: 0
[2026-03-09 17:40:24] 2026-03-09 21:39:45,236 | INFO     | exeerrorcode: 0
[2026-03-09 17:40:24] 2026-03-09 21:39:45,236 | INFO     | exeerrordiag: 
[2026-03-09 17:40:24] 2026-03-09 21:39:45,236 | INFO     | exitcode: 0
[2026-03-09 17:40:24] 2026-03-09 21:39:45,237 | INFO     | exitmsg: OK
[2026-03-09 17:40:24] 2026-03-09 21:39:45,237 | INFO     | cpuconsumptiontime: 43075 s
[2026-03-09 17:40:24] 2026-03-09 21:39:45,237 | INFO     | nevents: 400
[2026-03-09 17:40:24] 2026-03-09 21:39:45,237 | INFO     | neventsw: 0
[2026-03-09 17:40:24] 2026-03-09 21:39:45,237 | INFO     | pid: 1709062
[2026-03-09 17:40:24] 2026-03-09 21:39:45,237 | INFO     | pgrp: 1709062
[2026-03-09 17:40:24] 2026-03-09 21:39:45,237 | INFO     | corecount: 8
[2026-03-09 17:40:24] 2026-03-09 21:39:45,237 | INFO     | event service: False
[2026-03-09 17:40:24] 2026-03-09 21:39:45,237 | INFO     | sizes: {0: 2279140, 2: 2279825, 4: 2279825, 5: 2243807, 6: 2280342, 7: 2280342, 9: 2280498, 63210: 2331069, 63211: 2331068, 63225: 2340122, 63226: 2340178, 63230: 
[2026-03-09 17:40:24] 2026-03-09 21:39:45,237 | INFO     | --------------------------------------------------
[2026-03-09 17:40:24] 2026-03-09 21:39:45,238 | INFO     | 
[2026-03-09 17:40:24] 2026-03-09 21:39:45,238 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-03-09 17:40:24] 2026-03-09 21:39:45,467 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-09 17:40:24] 2026-03-09 21:39:45,467 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-09 17:40:24] 2026-03-09 21:39:45,467 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-09 17:40:24] 2026-03-09 21:39:45,468 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-09 17:40:24] 2026-03-09 21:39:45,468 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-09 17:40:24] 2026-03-09 21:39:45,468 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-09 17:40:24] 2026-03-09 21:39:45,468 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-09 17:40:24] 2026-03-09 21:39:45,468 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-09 17:40:24] 2026-03-09 21:39:45,468 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-09 17:40:24] 2026-03-09 21:39:45,468 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-09 17:40:24] 2026-03-09 21:39:45,468 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-09 17:40:24] 2026-03-09 21:39:45,468 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-09 17:40:24] 2026-03-09 21:39:45,468 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-09 17:40:24] 2026-03-09 21:39:45,469 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-09 17:40:24] 2026-03-09 21:39:45,469 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-09 17:40:24] 2026-03-09 21:39:45,469 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-09 17:40:24] 2026-03-09 21:39:45,469 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-09 17:40:24] 2026-03-09 21:39:45,469 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-09 17:40:24] 2026-03-09 21:39:45,469 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-09 17:40:24] 2026-03-09 21:39:45,469 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-09 17:40:24] 2026-03-09 21:39:45,469 | INFO     | job 7040267733 has completed (purged errors)
[2026-03-09 17:40:24] 2026-03-09 21:39:45,470 | INFO     | overall cleanup function is called
[2026-03-09 17:40:24] 2026-03-09 21:39:46,491 | INFO     | --- collectZombieJob: --- 10, [1709062]
[2026-03-09 17:40:24] 2026-03-09 21:39:46,492 | INFO     | zombie collector waiting for pid 1709062
[2026-03-09 17:40:24] 2026-03-09 21:39:46,492 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-09 17:40:24] 2026-03-09 21:39:46,492 | INFO     | collected zombie processes
[2026-03-09 17:40:24] 2026-03-09 21:39:46,492 | INFO     | will attempt to kill all subprocesses of pid=1709062
[2026-03-09 17:40:24] 2026-03-09 21:39:48,160 | INFO     | process IDs to be killed: [1709062] (in reverse order)
[2026-03-09 17:40:24] 2026-03-09 21:39:48,429 | WARNING  | found no corresponding commands to process id(s)
[2026-03-09 17:40:24] 2026-03-09 21:39:48,430 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-09 17:40:24] 2026-03-09 21:39:48,476 | INFO     | did not find any defunct processes belonging to 1709062
[2026-03-09 17:40:24] 2026-03-09 21:39:48,525 | INFO     | did not find any defunct processes belonging to 1709062
[2026-03-09 17:40:24] 2026-03-09 21:39:48,525 | INFO     | ready for new job
[2026-03-09 17:40:24] 2026-03-09 21:39:48,525 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-09 17:40:24] 2026-03-09 21:39:48,535 | INFO     | **************************************
[2026-03-09 17:40:24] 2026-03-09 21:39:48,535 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-09 17:40:24] 2026-03-09 21:39:48,536 | INFO     | **************************************
[2026-03-09 17:40:24] 2026-03-09 21:39:48,536 | INFO     | 
[2026-03-09 17:40:24] 2026-03-09 21:39:48,538 | INFO     | architecture information:
[2026-03-09 17:40:24] 2026-03-09 21:39:48,544 | INFO     | executing command: cat /etc/os-release
[2026-03-09 17:40:24] 2026-03-09 21:39:48,593 | INFO     | cat /etc/os-release:
[2026-03-09 17:40:24] NAME="CentOS Linux"
[2026-03-09 17:40:24] VERSION="7 (Core)"
[2026-03-09 17:40:24] ID="centos"
[2026-03-09 17:40:24] ID_LIKE="rhel fedora"
[2026-03-09 17:40:24] VERSION_ID="7"
[2026-03-09 17:40:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-09 17:40:24] ANSI_COLOR="0;31"
[2026-03-09 17:40:24] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-09 17:40:24] HOME_URL="https://www.centos.org/"
[2026-03-09 17:40:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-09 17:40:24] 
[2026-03-09 17:40:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-09 17:40:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-09 17:40:24] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-09 17:40:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-09 17:40:24] 
[2026-03-09 17:40:24] 2026-03-09 21:39:48,593 | INFO     | **************************************
[2026-03-09 17:40:24] 2026-03-09 21:39:49,114 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-03-09 17:40:24] 2026-03-09 21:39:49,299 | INFO     | sufficient remaining disk space (74851549184 B)
[2026-03-09 17:40:24] 2026-03-09 21:39:49,299 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-09 17:40:24] 2026-03-09 21:39:49,299 | INFO     | current server update state: UPDATING_FINAL
[2026-03-09 17:40:24] 2026-03-09 21:39:49,299 | INFO     | update_server=False
[2026-03-09 17:40:24] 2026-03-09 21:39:49,299 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-09 17:40:24] 2026-03-09 21:39:49,300 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-09 17:40:24] 2026-03-09 21:39:49,565 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-09 17:40:24] 2026-03-09 21:39:49,566 | INFO     | aborting loop
[2026-03-09 17:40:24] 2026-03-09 21:39:49,723 | INFO     | all data control threads have been joined
[2026-03-09 17:40:24] 2026-03-09 21:39:50,269 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-09 17:40:24] 2026-03-09 21:39:50,306 | INFO     | [job] retrieve thread has finished
[2026-03-09 17:40:24] 2026-03-09 21:39:50,438 | INFO     | [payload] failed_post thread has finished
[2026-03-09 17:40:24] 2026-03-09 21:39:50,572 | INFO     | [job] job monitor thread has finished
[2026-03-09 17:40:24] 2026-03-09 21:39:50,729 | INFO     | [data] control thread has finished
[2026-03-09 17:40:24] 2026-03-09 21:39:50,815 | INFO     | all payload control threads have been joined
[2026-03-09 17:40:24] 2026-03-09 21:39:51,008 | INFO     | [job] validate thread has finished
[2026-03-09 17:40:24] 2026-03-09 21:39:51,018 | INFO     | [data] copytool_in thread has finished
[2026-03-09 17:40:24] 2026-03-09 21:39:51,032 | INFO     | [payload] validate_pre thread has finished
[2026-03-09 17:40:24] 2026-03-09 21:39:51,036 | INFO     | [job] create_data_payload thread has finished
[2026-03-09 17:40:24] 2026-03-09 21:39:51,046 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-09 17:40:24] 2026-03-09 21:39:51,118 | INFO     | all job control threads have been joined
[2026-03-09 17:40:24] 2026-03-09 21:39:51,294 | INFO     | [job] queue monitor thread has finished
[2026-03-09 17:40:24] 2026-03-09 21:39:51,306 | INFO     | [data] copytool_out thread has finished
[2026-03-09 17:40:24] 2026-03-09 21:39:51,367 | INFO     | [payload] execute_payloads thread has finished
[2026-03-09 17:40:24] 2026-03-09 21:39:51,498 | INFO     | [payload] validate_post thread has finished
[2026-03-09 17:40:24] 2026-03-09 21:39:51,821 | INFO     | [payload] control thread has finished
[2026-03-09 17:40:24] 2026-03-09 21:39:52,124 | INFO     | [job] control thread has finished
[2026-03-09 17:40:24] 2026-03-09 21:39:52,151 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-09 17:40:24] 2026-03-09 21:39:56,222 | INFO     | [data] queue_monitor thread has finished
[2026-03-09 17:40:24] 2026-03-09 21:40:08,941 | INFO     | [monitor] cgroup control has ended
[2026-03-09 17:40:24] 2026-03-09 21:40:09,044 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140114132772672)>', '<ExcThread(monitor, started 140113501742848)>']
[2026-03-09 17:40:24] 2026-03-09 21:40:14,070 | INFO     | all workflow threads have been joined
[2026-03-09 17:40:24] 2026-03-09 21:40:14,074 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-09 17:40:24] 2026-03-09 21:40:14,074 | INFO     | traces error code: 0
[2026-03-09 17:40:24] 2026-03-09 21:40:14,074 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-09 17:40:24] 2026-03-09 21:40:22,581 | INFO     | PID=1679344 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-09 17:40:24] 2026-03-09 21:40:22,583 | INFO     | .. there are 32 such processes running
[2026-03-09 17:40:24] 2026-03-09 21:40:22,587 | INFO     | found 0 job(s) in 20 queues
[2026-03-09 17:40:24] 2026-03-09 21:40:22,588 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-09 17:40:24] 2026-03-09 21:40:22,588 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-09 17:40:24] 2026-03-09 21:40:22,588 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-09 17:40:24] 2026-03-09 21:40:22,588 | INFO     | [monitor] control thread has ended
[2026-03-09 17:40:24] 2026-03-09 21:40:23,026 [wrapper] ==== pilot stdout END ====
[2026-03-09 17:40:24] 2026-03-09 21:40:23,062 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-09 17:40:24] 2026-03-09 21:40:23,105 [wrapper] pilotpid: 1679344
[2026-03-09 17:40:24] 2026-03-09 21:40:23,158 [wrapper] Pilot exit status: 0
[2026-03-09 17:40:24] 2026-03-09 21:40:23,504 [wrapper] pandaids: 7040267733
[2026-03-09 17:40:24] 2026-03-09 21:40:23,841 [wrapper] cleanup supervisor_pilot 1275850 1679345
[2026-03-09 17:40:24] 2026-03-09 21:40:23,855 [wrapper] Test setup, not cleaning
[2026-03-09 17:40:24] 2026-03-09 21:40:23,876 [wrapper] apfmon messages muted
[2026-03-09 17:40:24] 2026-03-09 21:40:23,879 [wrapper] ==== wrapper stdout END ====
[2026-03-09 17:40:24] 2026-03-09 21:40:23,881 [wrapper] ==== wrapper stderr END ====
[2026-03-09 17:40:24]  *** Error codes and diagnostics ***
[2026-03-09 17:40:24]     "exeErrorCode": 0,
[2026-03-09 17:40:24]     "exeErrorDiag": "",
[2026-03-09 17:40:24]     "pilotErrorCode": 0,
[2026-03-09 17:40:24]     "pilotErrorDiag": "",
[2026-03-09 17:40:24]  *** Listing of results directory ***
[2026-03-09 17:40:24] total 623000
[2026-03-09 17:40:24] -rw-r--r--. 1 boincer umatlas    584627 Mar  8 17:54 pilot3.tar.gz
[2026-03-09 17:40:24] -rw-r--r--. 1 boincer umatlas      5111 Mar  8 18:41 queuedata.json
[2026-03-09 17:40:24] -rwx------. 1 boincer umatlas     36322 Mar  8 18:41 runpilot2-wrapper.sh
[2026-03-09 17:40:24] -rw-r--r--. 1 boincer umatlas       100 Mar  9 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-09 17:40:24] -rwxr-xr-x. 1 boincer umatlas      7986 Mar  9 00:01 run_atlas
[2026-03-09 17:40:24] -rw-r--r--. 1 boincer umatlas       105 Mar  9 00:01 job.xml
[2026-03-09 17:40:24] -rw-r--r--. 2 boincer umatlas 437669174 Mar  9 00:02 EVNT.46701403._000600.pool.root.1
[2026-03-09 17:40:24] -rw-r--r--. 2 boincer umatlas     15845 Mar  9 00:02 start_atlas.sh
[2026-03-09 17:40:24] drwxrwx--x. 2 boincer umatlas      4096 Mar  9 00:02 shared
[2026-03-09 17:40:24] -rw-r--r--. 2 boincer umatlas    597957 Mar  9 00:02 input.tar.gz
[2026-03-09 17:40:24] -rw-r--r--. 1 boincer umatlas         0 Mar  9 00:02 boinc_lockfile
[2026-03-09 17:40:24] -rw-r--r--. 1 boincer umatlas      2564 Mar  9 00:02 pandaJob.out
[2026-03-09 17:40:24] -rw-------. 1 boincer umatlas        57 Mar  9 00:02 setup.sh.local
[2026-03-09 17:40:24] -rw-------. 1 boincer umatlas       438 Mar  9 00:05 workernode_map.json
[2026-03-09 17:40:24] -rw-------. 1 boincer umatlas    999108 Mar  9 00:05 agis_schedconf.cvmfs.json
[2026-03-09 17:40:24] drwx------. 5 boincer umatlas      4096 Mar  9 00:05 pilot3
[2026-03-09 17:40:24] -rw-------. 1 boincer umatlas 182199954 Mar  9 17:35 HITS.48955006._029993.pool.root.1
[2026-03-09 17:40:24] -rw-r--r--. 1 boincer umatlas       531 Mar  9 17:35 boinc_task_state.xml
[2026-03-09 17:40:24] -rw-------. 1 boincer umatlas      1040 Mar  9 17:39 memory_monitor_summary.json
[2026-03-09 17:40:24] -rw-------. 1 boincer umatlas   1511578 Mar  9 17:39 agis_ddmendpoints.agis.ALL.json
[2026-03-09 17:40:24] -rw-------. 1 boincer umatlas    953029 Mar  9 17:39 log.48955006._029993.job.log.tgz.1
[2026-03-09 17:40:24] -rw-------. 1 boincer umatlas      6388 Mar  9 17:39 heartbeat.json
[2026-03-09 17:40:24] -rw-r--r--. 1 boincer umatlas      6658 Mar  9 17:40 init_data.xml
[2026-03-09 17:40:24] -rw-r--r--. 1 boincer umatlas      8192 Mar  9 17:40 boinc_mmap_file
[2026-03-09 17:40:24] -rw-r--r--. 1 boincer umatlas        28 Mar  9 17:40 wrapper_checkpoint.txt
[2026-03-09 17:40:24] -rw-------. 1 boincer umatlas        95 Mar  9 17:40 pilot_heartbeat.json
[2026-03-09 17:40:24] -rw-------. 1 boincer umatlas       823 Mar  9 17:40 pilotlog.txt
[2026-03-09 17:40:24] -rw-------. 1 boincer umatlas   6121929 Mar  9 17:40 log.48955006._029993.job.log.1
[2026-03-09 17:40:24] -rw-------. 1 boincer umatlas       357 Mar  9 17:40 output.list
[2026-03-09 17:40:24] -rw-r--r--. 1 boincer umatlas       620 Mar  9 17:40 runtime_log
[2026-03-09 17:40:24] -rw-------. 1 boincer umatlas   7096320 Mar  9 17:40 result.tar.gz
[2026-03-09 17:40:24] -rw-r--r--. 1 boincer umatlas      9327 Mar  9 17:40 runtime_log.err
[2026-03-09 17:40:24] -rw-------. 1 boincer umatlas       654 Mar  9 17:40 bX9MDmGzbJ9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm2TaLDm2FkPPo.diag
[2026-03-09 17:40:24] -rw-r--r--. 1 boincer umatlas     21421 Mar  9 17:40 stderr.txt
[2026-03-09 17:40:24] HITS file was successfully produced:
[2026-03-09 17:40:24] -rw-------. 1 boincer umatlas 182199954 Mar  9 17:35 shared/HITS.pool.root.1
[2026-03-09 17:40:24]  *** Contents of shared directory: ***
[2026-03-09 17:40:24] total 612884
[2026-03-09 17:40:24] -rw-r--r--. 2 boincer umatlas 437669174 Mar  9 00:02 ATLAS.root_0
[2026-03-09 17:40:24] -rw-r--r--. 2 boincer umatlas     15845 Mar  9 00:02 start_atlas.sh
[2026-03-09 17:40:24] -rw-r--r--. 2 boincer umatlas    597957 Mar  9 00:02 input.tar.gz
[2026-03-09 17:40:24] -rw-------. 1 boincer umatlas 182199954 Mar  9 17:35 HITS.pool.root.1
[2026-03-09 17:40:24] -rw-------. 1 boincer umatlas   7096320 Mar  9 17:40 result.tar.gz
17:40:26 (1661651): run_atlas exited; CPU time 45587.530518
17:40:26 (1661651): called boinc_finish(0)

</stderr_txt>
]]>

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