Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:23:42 (131804): wrapper (7.7.26015): starting
06:23:42 (131804): wrapper: running run_atlas (--nthreads 4)
[2026-03-09 06:23:42] Arguments: --nthreads 4
[2026-03-09 06:23:42] Threads: 4
[2026-03-09 06:23:42] Checking for CVMFS
[2026-03-09 06:23:42] No cvmfs_config command found, will try listing directly
[2026-03-09 06:23:42] CVMFS is ok
[2026-03-09 06:23:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-09 06:23:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-09 06:23:42] Further information can be found at the LHC@home message board.
[2026-03-09 06:23:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-09 06:23:42] Checking for apptainer binary...
[2026-03-09 06:23:42] which: no apptainer in ((null))
[2026-03-09 06:23:42] apptainer is not installed, using version from CVMFS
[2026-03-09 06:23:42] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-09 06:23:43] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot16/slots/4/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut09.grid.cesnet.cz
[2026-03-09 06:23:43] apptainer works
[2026-03-09 06:23:43] Set ATHENA_PROC_NUMBER=4
[2026-03-09 06:23:43] Set ATHENA_CORE_NUMBER=4
[2026-03-09 06:23:43] Starting ATLAS job with PandaID=7046608538
[2026-03-09 06:23:43] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot16/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
08:39:11 (324140): wrapper (7.7.26015): starting
08:39:11 (324140): wrapper: running run_atlas (--nthreads 4)
[2026-03-09 08:39:11] Arguments: --nthreads 4
[2026-03-09 08:39:11] Threads: 4
[2026-03-09 08:39:11] This job has been restarted, cleaning up previous attempt
[2026-03-09 08:39:11] Checking for CVMFS
[2026-03-09 08:39:11] No cvmfs_config command found, will try listing directly
[2026-03-09 08:39:11] CVMFS is ok
[2026-03-09 08:39:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-09 08:39:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-09 08:39:11] Further information can be found at the LHC@home message board.
[2026-03-09 08:39:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-09 08:39:11] Checking for apptainer binary...
[2026-03-09 08:39:11] which: no apptainer in ((null))
[2026-03-09 08:39:11] apptainer is not installed, using version from CVMFS
[2026-03-09 08:39:11] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-09 08:39:11] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot16/slots/4/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut09.grid.cesnet.cz
[2026-03-09 08:39:11] apptainer works
[2026-03-09 08:39:11] Set ATHENA_PROC_NUMBER=4
[2026-03-09 08:39:11] Set ATHENA_CORE_NUMBER=4
[2026-03-09 08:39:11] Starting ATLAS job with PandaID=7046608538
[2026-03-09 08:39:11] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot16/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-09 12:39:59]  *** The last 200 lines of the pilot log: ***
[2026-03-09 12:39:59] 2026-03-09 11:39:18,271 | INFO     | total number of processed events: 400 (read)
[2026-03-09 12:39:59] 2026-03-09 11:39:18,283 | INFO     | using path: /var/lib/boinc/var/slot16/slots/4/PanDA_Pilot-7046608538/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 12:39:59] 2026-03-09 11:39:18,283 | INFO     | extracted standard info from prmon json
[2026-03-09 12:39:59] 2026-03-09 11:39:18,284 | INFO     | extracted standard memory fields from prmon json
[2026-03-09 12:39:59] 2026-03-09 11:39:18,284 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-09 12:39:59] 2026-03-09 11:39:18,284 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-09 12:39:59] 2026-03-09 11:39:18,284 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-09 12:39:59] 2026-03-09 11:39:18,288 | INFO     | fitting pss+swap vs Time
[2026-03-09 12:39:59] 2026-03-09 11:39:18,289 | INFO     | sum of square deviations: 4075741535.0
[2026-03-09 12:39:59] 2026-03-09 11:39:18,290 | INFO     | sum of deviations: -9895410087.5
[2026-03-09 12:39:59] 2026-03-09 11:39:18,291 | INFO     | mean x: 1773049158.5
[2026-03-09 12:39:59] 2026-03-09 11:39:18,291 | INFO     | mean y: 2324306.275423729
[2026-03-09 12:39:59] 2026-03-09 11:39:18,291 | INFO     | intersect: 4307074344.517063
[2026-03-09 12:39:59] 2026-03-09 11:39:18,291 | INFO     | chi2: 2.159036840645859
[2026-03-09 12:39:59] 2026-03-09 11:39:18,292 | INFO     | sum of square deviations: 3822136780.0
[2026-03-09 12:39:59] 2026-03-09 11:39:18,293 | INFO     | sum of deviations: 4275168225.000004
[2026-03-09 12:39:59] 2026-03-09 11:39:18,293 | INFO     | mean x: 1773049006.0
[2026-03-09 12:39:59] 2026-03-09 11:39:18,293 | INFO     | mean y: 2332682.2510822513
[2026-03-09 12:39:59] 2026-03-09 11:39:18,293 | INFO     | intersect: -1980872840.7650356
[2026-03-09 12:39:59] 2026-03-09 11:39:18,294 | INFO     | chi2: 1.4402320777105926
[2026-03-09 12:39:59] 2026-03-09 11:39:18,294 | INFO     | current chi2=1.4402320777105926 (change=33.29284379974923 %)
[2026-03-09 12:39:59] 2026-03-09 11:39:18,294 | INFO     | sum of square deviations: 3579276412.5
[2026-03-09 12:39:59] 2026-03-09 11:39:18,296 | INFO     | sum of deviations: 4143306019.500002
[2026-03-09 12:39:59] 2026-03-09 11:39:18,296 | INFO     | mean x: 1773048853.5
[2026-03-09 12:39:59] 2026-03-09 11:39:18,296 | INFO     | mean y: 2332599.4380530976
[2026-03-09 12:39:59] 2026-03-09 11:39:18,296 | INFO     | intersect: -2050116873.8461304
[2026-03-09 12:39:59] 2026-03-09 11:39:18,296 | INFO     | chi2: 1.4404321674497984
[2026-03-09 12:39:59] 2026-03-09 11:39:18,297 | INFO     | current chi2=1.4404321674497984 (change=-0.01389288173083096 %)
[2026-03-09 12:39:59] 2026-03-09 11:39:18,297 | INFO     | right removable region: 225
[2026-03-09 12:39:59] 2026-03-09 11:39:18,297 | INFO     | sum of square deviations: 3822136780.0
[2026-03-09 12:39:59] 2026-03-09 11:39:18,299 | INFO     | sum of deviations: -39554850919.0
[2026-03-09 12:39:59] 2026-03-09 11:39:18,299 | INFO     | mean x: 1773049311.0
[2026-03-09 12:39:59] 2026-03-09 11:39:18,299 | INFO     | mean y: 2341936.229437229
[2026-03-09 12:39:59] 2026-03-09 11:39:18,299 | INFO     | intersect: 18351423930.265423
[2026-03-09 12:39:59] 2026-03-09 11:39:18,299 | INFO     | chi2: 0.825427863004932
[2026-03-09 12:39:59] 2026-03-09 11:39:18,299 | INFO     | current chi2=0.825427863004932 (change=61.76869947443734 %)
[2026-03-09 12:39:59] 2026-03-09 11:39:18,300 | INFO     | sum of square deviations: 3579276412.5
[2026-03-09 12:39:59] 2026-03-09 11:39:18,301 | INFO     | sum of deviations: -35970301697.0
[2026-03-09 12:39:59] 2026-03-09 11:39:18,301 | INFO     | mean x: 1773049463.5
[2026-03-09 12:39:59] 2026-03-09 11:39:18,302 | INFO     | mean y: 2339673.7345132744
[2026-03-09 12:39:59] 2026-03-09 11:39:18,302 | INFO     | intersect: 17820780267.779854
[2026-03-09 12:39:59] 2026-03-09 11:39:18,302 | INFO     | chi2: 0.821358146732455
[2026-03-09 12:39:59] 2026-03-09 11:39:18,302 | INFO     | current chi2=0.821358146732455 (change=0.493043239134353 %)
[2026-03-09 12:39:59] 2026-03-09 11:39:18,302 | INFO     | left removable region: 20
[2026-03-09 12:39:59] 2026-03-09 11:39:18,303 | INFO     | sum of square deviations: 2671343110.0
[2026-03-09 12:39:59] 2026-03-09 11:39:18,304 | INFO     | sum of deviations: -11040708603.000004
[2026-03-09 12:39:59] 2026-03-09 11:39:18,304 | INFO     | mean x: 1773049433.0
[2026-03-09 12:39:59] 2026-03-09 11:39:18,304 | INFO     | mean y: 2341427.2682926827
[2026-03-09 12:39:59] 2026-03-09 11:39:18,304 | INFO     | intersect: 7330386280.50595
[2026-03-09 12:39:59] 2026-03-09 11:39:18,305 | INFO     | chi2: 0.0562922505812654
[2026-03-09 12:39:59] 2026-03-09 11:39:18,305 | INFO     | current memory leak: -4.13 B/s (using 205 data points, chi2=0.06)
[2026-03-09 12:39:59] 2026-03-09 11:39:18,305 | INFO     | could have reported an average CPU frequency of 2541 MHz (11 samples)
[2026-03-09 12:39:59] 2026-03-09 11:39:18,306 | INFO     | ..............................
[2026-03-09 12:39:59] 2026-03-09 11:39:18,306 | INFO     | . Timing measurements:
[2026-03-09 12:39:59] 2026-03-09 11:39:18,306 | INFO     | . get job = 0 s
[2026-03-09 12:39:59] 2026-03-09 11:39:18,306 | INFO     | . initial setup = 1 s
[2026-03-09 12:39:59] 2026-03-09 11:39:18,306 | INFO     | . payload setup = 10 s
[2026-03-09 12:39:59] 2026-03-09 11:39:18,306 | INFO     | . stage-in = 0 s
[2026-03-09 12:39:59] 2026-03-09 11:39:18,306 | INFO     | . payload execution = 14369 s
[2026-03-09 12:39:59] 2026-03-09 11:39:18,306 | INFO     | . stage-out = 1 s
[2026-03-09 12:39:59] 2026-03-09 11:39:18,306 | INFO     | . log creation = 0 s
[2026-03-09 12:39:59] 2026-03-09 11:39:18,306 | INFO     | ..............................
[2026-03-09 12:39:59] 2026-03-09 11:39:18,404 | INFO     | 
[2026-03-09 12:39:59] 2026-03-09 11:39:18,404 | INFO     | job summary report
[2026-03-09 12:39:59] 2026-03-09 11:39:18,404 | INFO     | --------------------------------------------------
[2026-03-09 12:39:59] 2026-03-09 11:39:18,404 | INFO     | PanDA job id: 7046608538
[2026-03-09 12:39:59] 2026-03-09 11:39:18,405 | INFO     | task id: 48966988
[2026-03-09 12:39:59] 2026-03-09 11:39:18,405 | INFO     | errors: (none)
[2026-03-09 12:39:59] 2026-03-09 11:39:18,405 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-09 12:39:59] 2026-03-09 11:39:18,405 | INFO     | pilot state: finished 
[2026-03-09 12:39:59] 2026-03-09 11:39:18,405 | INFO     | transexitcode: 0
[2026-03-09 12:39:59] 2026-03-09 11:39:18,405 | INFO     | exeerrorcode: 0
[2026-03-09 12:39:59] 2026-03-09 11:39:18,405 | INFO     | exeerrordiag: 
[2026-03-09 12:39:59] 2026-03-09 11:39:18,405 | INFO     | exitcode: 0
[2026-03-09 12:39:59] 2026-03-09 11:39:18,405 | INFO     | exitmsg: OK
[2026-03-09 12:39:59] 2026-03-09 11:39:18,405 | INFO     | cpuconsumptiontime: 53857 s
[2026-03-09 12:39:59] 2026-03-09 11:39:18,405 | INFO     | nevents: 400
[2026-03-09 12:39:59] 2026-03-09 11:39:18,405 | INFO     | neventsw: 0
[2026-03-09 12:39:59] 2026-03-09 11:39:18,405 | INFO     | pid: 330878
[2026-03-09 12:39:59] 2026-03-09 11:39:18,406 | INFO     | pgrp: 330878
[2026-03-09 12:39:59] 2026-03-09 11:39:18,406 | INFO     | corecount: 4
[2026-03-09 12:39:59] 2026-03-09 11:39:18,406 | INFO     | event service: False
[2026-03-09 12:39:59] 2026-03-09 11:39:18,406 | INFO     | sizes: {0: 2279847, 1: 2280308, 14383: 2311061, 14385: 2320081, 14386: 2320137, 14388: 2320331}
[2026-03-09 12:39:59] 2026-03-09 11:39:18,406 | INFO     | --------------------------------------------------
[2026-03-09 12:39:59] 2026-03-09 11:39:18,406 | INFO     | 
[2026-03-09 12:39:59] 2026-03-09 11:39:18,406 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot16/slots/4
[2026-03-09 12:39:59] 2026-03-09 11:39:18,444 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-09 12:39:59] 2026-03-09 11:39:18,444 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-09 12:39:59] 2026-03-09 11:39:18,444 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-09 12:39:59] 2026-03-09 11:39:18,444 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-09 12:39:59] 2026-03-09 11:39:18,444 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-09 12:39:59] 2026-03-09 11:39:18,444 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-09 12:39:59] 2026-03-09 11:39:18,445 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-09 12:39:59] 2026-03-09 11:39:18,445 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-09 12:39:59] 2026-03-09 11:39:18,445 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-09 12:39:59] 2026-03-09 11:39:18,445 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-09 12:39:59] 2026-03-09 11:39:18,445 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-09 12:39:59] 2026-03-09 11:39:18,445 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-09 12:39:59] 2026-03-09 11:39:18,445 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-09 12:39:59] 2026-03-09 11:39:18,445 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-09 12:39:59] 2026-03-09 11:39:18,445 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-09 12:39:59] 2026-03-09 11:39:18,445 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-09 12:39:59] 2026-03-09 11:39:18,445 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-09 12:39:59] 2026-03-09 11:39:18,445 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-09 12:39:59] 2026-03-09 11:39:18,445 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-09 12:39:59] 2026-03-09 11:39:18,446 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-09 12:39:59] 2026-03-09 11:39:18,446 | INFO     | job 7046608538 has completed (purged errors)
[2026-03-09 12:39:59] 2026-03-09 11:39:18,446 | INFO     | overall cleanup function is called
[2026-03-09 12:39:59] 2026-03-09 11:39:18,870 | INFO     | PID=328258 has CPU usage=13.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-09 12:39:59] 2026-03-09 11:39:18,870 | INFO     | .. there are 13 such processes running
[2026-03-09 12:39:59] 2026-03-09 11:39:19,464 | INFO     | --- collectZombieJob: --- 10, [330878]
[2026-03-09 12:39:59] 2026-03-09 11:39:19,465 | INFO     | zombie collector waiting for pid 330878
[2026-03-09 12:39:59] 2026-03-09 11:39:19,465 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-09 12:39:59] 2026-03-09 11:39:19,465 | INFO     | collected zombie processes
[2026-03-09 12:39:59] 2026-03-09 11:39:19,465 | INFO     | will attempt to kill all subprocesses of pid=330878
[2026-03-09 12:39:59] 2026-03-09 11:39:19,814 | INFO     | process IDs to be killed: [330878] (in reverse order)
[2026-03-09 12:39:59] 2026-03-09 11:39:19,951 | WARNING  | found no corresponding commands to process id(s)
[2026-03-09 12:39:59] 2026-03-09 11:39:19,951 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-09 12:39:59] 2026-03-09 11:39:19,966 | INFO     | did not find any defunct processes belonging to 330878
[2026-03-09 12:39:59] 2026-03-09 11:39:19,980 | INFO     | did not find any defunct processes belonging to 330878
[2026-03-09 12:39:59] 2026-03-09 11:39:19,981 | INFO     | ready for new job
[2026-03-09 12:39:59] 2026-03-09 11:39:19,981 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-09 12:39:59] 2026-03-09 11:39:19,984 | INFO     | **************************************
[2026-03-09 12:39:59] 2026-03-09 11:39:19,984 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-09 12:39:59] 2026-03-09 11:39:19,984 | INFO     | **************************************
[2026-03-09 12:39:59] 2026-03-09 11:39:19,984 | INFO     | 
[2026-03-09 12:39:59] 2026-03-09 11:39:19,988 | INFO     | architecture information:
[2026-03-09 12:39:59] 2026-03-09 11:39:19,988 | INFO     | executing command: cat /etc/os-release
[2026-03-09 12:39:59] 2026-03-09 11:39:20,006 | INFO     | cat /etc/os-release:
[2026-03-09 12:39:59] NAME="CentOS Linux"
[2026-03-09 12:39:59] VERSION="7 (Core)"
[2026-03-09 12:39:59] ID="centos"
[2026-03-09 12:39:59] ID_LIKE="rhel fedora"
[2026-03-09 12:39:59] VERSION_ID="7"
[2026-03-09 12:39:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-09 12:39:59] ANSI_COLOR="0;31"
[2026-03-09 12:39:59] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-09 12:39:59] HOME_URL="https://www.centos.org/"
[2026-03-09 12:39:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-09 12:39:59] 
[2026-03-09 12:39:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-09 12:39:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-09 12:39:59] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-09 12:39:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-09 12:39:59] 
[2026-03-09 12:39:59] 2026-03-09 11:39:20,007 | INFO     | **************************************
[2026-03-09 12:39:59] 2026-03-09 11:39:20,510 | INFO     | executing command: df -mP /var/lib/boinc/var/slot16/slots/4
[2026-03-09 12:39:59] 2026-03-09 11:39:20,529 | INFO     | sufficient remaining disk space (20398997504 B)
[2026-03-09 12:39:59] 2026-03-09 11:39:20,530 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-09 12:39:59] 2026-03-09 11:39:20,530 | INFO     | current server update state: UPDATING_FINAL
[2026-03-09 12:39:59] 2026-03-09 11:39:20,530 | INFO     | update_server=False
[2026-03-09 12:39:59] 2026-03-09 11:39:20,530 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-09 12:39:59] 2026-03-09 11:39:20,564 | INFO     | all job control threads have been joined
[2026-03-09 12:39:59] 2026-03-09 11:39:20,589 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-09 12:39:59] 2026-03-09 11:39:20,967 | INFO     | all data control threads have been joined
[2026-03-09 12:39:59] 2026-03-09 11:39:21,147 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-09 12:39:59] 2026-03-09 11:39:21,148 | INFO     | aborting loop
[2026-03-09 12:39:59] 2026-03-09 11:39:21,234 | INFO     | all payload control threads have been joined
[2026-03-09 12:40:00] 2026-03-09 11:39:21,536 | INFO     | [job] retrieve thread has finished
[2026-03-09 12:40:00] 2026-03-09 11:39:21,571 | INFO     | [job] control thread has finished
[2026-03-09 12:40:00] 2026-03-09 11:39:21,914 | INFO     | [payload] failed_post thread has finished
[2026-03-09 12:40:00] 2026-03-09 11:39:21,921 | INFO     | [payload] execute_payloads thread has finished
[2026-03-09 12:40:00] 2026-03-09 11:39:21,973 | INFO     | [data] control thread has finished
[2026-03-09 12:40:00] 2026-03-09 11:39:22,130 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-09 12:40:00] 2026-03-09 11:39:22,153 | INFO     | [job] job monitor thread has finished
[2026-03-09 12:40:00] 2026-03-09 11:39:22,241 | INFO     | [payload] control thread has finished
[2026-03-09 12:40:00] 2026-03-09 11:39:22,284 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-09 12:40:00] 2026-03-09 11:39:22,329 | INFO     | [payload] validate_pre thread has finished
[2026-03-09 12:40:00] 2026-03-09 11:39:22,504 | INFO     | [data] copytool_in thread has finished
[2026-03-09 12:40:00] 2026-03-09 11:39:22,504 | INFO     | [job] validate thread has finished
[2026-03-09 12:40:00] 2026-03-09 11:39:22,511 | INFO     | [payload] validate_post thread has finished
[2026-03-09 12:40:00] 2026-03-09 11:39:22,597 | INFO     | [data] copytool_out thread has finished
[2026-03-09 12:40:00] 2026-03-09 11:39:23,014 | INFO     | [job] create_data_payload thread has finished
[2026-03-09 12:40:00] 2026-03-09 11:39:23,414 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-09 12:40:00] 2026-03-09 11:39:24,419 | INFO     | [job] queue monitor thread has finished
[2026-03-09 12:40:00] 2026-03-09 11:39:26,135 | INFO     | [data] queue_monitor thread has finished
[2026-03-09 12:40:00] 2026-03-09 11:39:28,191 [wrapper] supervise_pilot (15 min periods counter: 17)
[2026-03-09 12:40:00] 2026-03-09 11:39:51,417 | INFO     | PID=328258 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-09 12:40:00] 2026-03-09 11:39:51,417 | INFO     | .. there are 13 such processes running
[2026-03-09 12:40:00] 2026-03-09 11:39:51,417 | INFO     | found 0 job(s) in 20 queues
[2026-03-09 12:40:00] 2026-03-09 11:39:51,417 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-09 12:40:00] 2026-03-09 11:39:51,417 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-09 12:40:00] 2026-03-09 11:39:52,601 | INFO     | [monitor] cgroup control has ended
[2026-03-09 12:40:00] 2026-03-09 11:39:54,636 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23415768340288)>', '<ExcThread(monitor, started 23415523370752)>']
[2026-03-09 12:40:00] 2026-03-09 11:39:55,435 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-09 12:40:00] 2026-03-09 11:39:55,436 | INFO     | [monitor] control thread has ended
[2026-03-09 12:40:00] 2026-03-09 11:39:59,660 | INFO     | all workflow threads have been joined
[2026-03-09 12:40:00] 2026-03-09 11:39:59,661 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-09 12:40:00] 2026-03-09 11:39:59,661 | INFO     | traces error code: 0
[2026-03-09 12:40:00] 2026-03-09 11:39:59,661 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-09 12:40:00] 2026-03-09 11:39:59,814 [wrapper] ==== pilot stdout END ====
[2026-03-09 12:40:00] 2026-03-09 11:39:59,816 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-09 12:40:00] 2026-03-09 11:39:59,819 [wrapper] pilotpid: 328258
[2026-03-09 12:40:00] 2026-03-09 11:39:59,824 [wrapper] Pilot exit status: 0
[2026-03-09 12:40:00] 2026-03-09 11:39:59,835 [wrapper] pandaids: 7046608538 7046608538
[2026-03-09 12:40:00] 2026-03-09 11:39:59,911 [wrapper] cleanup supervisor_pilot  597861 328259
[2026-03-09 12:40:00] 2026-03-09 11:39:59,915 [wrapper] Test setup, not cleaning
[2026-03-09 12:40:00] 2026-03-09 11:39:59,918 [wrapper] apfmon messages muted
[2026-03-09 12:40:00] 2026-03-09 11:39:59,921 [wrapper] ==== wrapper stdout END ====
[2026-03-09 12:40:00] 2026-03-09 11:39:59,923 [wrapper] ==== wrapper stderr END ====
[2026-03-09 12:40:00]  *** Error codes and diagnostics ***
[2026-03-09 12:40:00]     "exeErrorCode": 0,
[2026-03-09 12:40:00]     "exeErrorDiag": "",
[2026-03-09 12:40:00]     "pilotErrorCode": 0,
[2026-03-09 12:40:00]     "pilotErrorDiag": "",
[2026-03-09 12:40:00]  *** Listing of results directory ***
[2026-03-09 12:40:00] total 617912
[2026-03-09 12:40:00] drwx------. 5 boinc boinc      4096 Feb  2 16:00 pilot3
[2026-03-09 12:40:00] -rw-r--r--. 1 boinc boinc    584627 Mar  8 22:52 pilot3.tar.gz
[2026-03-09 12:40:00] -rwx------. 1 boinc boinc     36322 Mar  8 22:53 runpilot2-wrapper.sh
[2026-03-09 12:40:00] -rw-r--r--. 1 boinc boinc      5111 Mar  8 22:53 queuedata.json
[2026-03-09 12:40:00] -rw-r--r--. 1 boinc boinc       100 Mar  9 06:22 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-09 12:40:00] -rwxr-xr-x. 1 boinc boinc      7986 Mar  9 06:22 run_atlas
[2026-03-09 12:40:00] -rw-r--r--. 1 boinc boinc       105 Mar  9 06:22 job.xml
[2026-03-09 12:40:00] -rw-r--r--. 3 boinc boinc 213932679 Mar  9 06:23 EVNT.48966985._000755.pool.root.1
[2026-03-09 12:40:00] -rw-r--r--. 3 boinc boinc 213932679 Mar  9 06:23 ATLAS.root_0
[2026-03-09 12:40:00] -rw-r--r--. 2 boinc boinc     15845 Mar  9 06:23 start_atlas.sh
[2026-03-09 12:40:00] drwxrwx--x. 2 boinc boinc      4096 Mar  9 06:23 shared
[2026-03-09 12:40:00] -rw-r--r--. 2 boinc boinc    597967 Mar  9 06:23 input.tar.gz
[2026-03-09 12:40:00] -rw-r--r--. 1 boinc boinc         0 Mar  9 06:23 boinc_lockfile
[2026-03-09 12:40:00] -rw-r--r--. 1 boinc boinc      2591 Mar  9 08:39 pandaJob.out
[2026-03-09 12:40:00] -rw-------. 1 boinc boinc    987092 Mar  9 08:39 agis_schedconf.cvmfs.json
[2026-03-09 12:40:00] -rw-------. 1 boinc boinc       451 Mar  9 08:39 workernode_map.json
[2026-03-09 12:40:00] -rw-r--r--. 1 boinc boinc      6567 Mar  9 12:26 init_data.xml
[2026-03-09 12:40:00] -rw-------. 1 boinc boinc 196154195 Mar  9 12:38 HITS.48966988._019323.pool.root.1
[2026-03-09 12:40:00] -rw-r--r--. 1 boinc boinc       531 Mar  9 12:38 boinc_task_state.xml
[2026-03-09 12:40:00] -rw-------. 1 boinc boinc        97 Mar  9 12:38 pilot_heartbeat.json
[2026-03-09 12:40:00] -rw-------. 1 boinc boinc      1033 Mar  9 12:39 memory_monitor_summary.json
[2026-03-09 12:40:00] -rw-------. 1 boinc boinc   1511578 Mar  9 12:39 agis_ddmendpoints.agis.ALL.json
[2026-03-09 12:40:00] -rw-------. 1 boinc boinc    390806 Mar  9 12:39 log.48966988._019323.job.log.tgz.1
[2026-03-09 12:40:00] -rw-------. 1 boinc boinc      6399 Mar  9 12:39 heartbeat.json
[2026-03-09 12:40:00] -rw-r--r--. 1 boinc boinc      8192 Mar  9 12:39 boinc_mmap_file
[2026-03-09 12:40:00] -rw-r--r--. 1 boinc boinc        28 Mar  9 12:39 wrapper_checkpoint.txt
[2026-03-09 12:40:00] -rw-------. 1 boinc boinc      4828 Mar  9 12:39 pilotlog.txt
[2026-03-09 12:40:00] -rw-------. 1 boinc boinc   2010508 Mar  9 12:39 log.48966988._019323.job.log.1
[2026-03-09 12:40:00] -rw-------. 1 boinc boinc       357 Mar  9 12:39 output.list
[2026-03-09 12:40:00] -rw-r--r--. 1 boinc boinc       620 Mar  9 12:39 runtime_log
[2026-03-09 12:40:00] -rw-------. 1 boinc boinc   2416640 Mar  9 12:39 result.tar.gz
[2026-03-09 12:40:00] -rw-r--r--. 1 boinc boinc      9282 Mar  9 12:39 runtime_log.err
[2026-03-09 12:40:00] -rw-------. 1 boinc boinc       790 Mar  9 12:39 EawMDmBFbJ9n9Rq4apOajLDm4fhM0noT9bVooX4SDmXtXLDmqr0AUo.diag
[2026-03-09 12:40:00] -rw-r--r--. 1 boinc boinc     22809 Mar  9 12:40 stderr.txt
[2026-03-09 12:40:00] HITS file was successfully produced:
[2026-03-09 12:40:00] -rw-------. 1 boinc boinc 196154195 Mar  9 12:38 shared/HITS.pool.root.1
[2026-03-09 12:40:00]  *** Contents of shared directory: ***
[2026-03-09 12:40:00] total 403448
[2026-03-09 12:40:00] -rw-r--r--. 3 boinc boinc 213932679 Mar  9 06:23 ATLAS.root_0
[2026-03-09 12:40:00] -rw-r--r--. 2 boinc boinc     15845 Mar  9 06:23 start_atlas.sh
[2026-03-09 12:40:00] -rw-r--r--. 2 boinc boinc    597967 Mar  9 06:23 input.tar.gz
[2026-03-09 12:40:00] -rw-------. 1 boinc boinc 196154195 Mar  9 12:38 HITS.pool.root.1
[2026-03-09 12:40:00] -rw-------. 1 boinc boinc   2416640 Mar  9 12:39 result.tar.gz
12:40:02 (324140): run_atlas exited; CPU time 54476.951100
12:40:02 (324140): called boinc_finish(0)

</stderr_txt>
]]>

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