Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:08:35 (3834726): wrapper (7.7.26015): starting
22:08:35 (3834726): wrapper: running run_atlas (--nthreads 4)
[2026-03-09 22:08:35] Arguments: --nthreads 4
[2026-03-09 22:08:35] Threads: 4
[2026-03-09 22:08:35] Checking for CVMFS
[2026-03-09 22:08:35] No cvmfs_config command found, will try listing directly
[2026-03-09 22:08:35] CVMFS is ok
[2026-03-09 22:08:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-09 22:08:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-09 22:08:35] Further information can be found at the LHC@home message board.
[2026-03-09 22:08:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-09 22:08:35] Checking for apptainer binary...
[2026-03-09 22:08:35] which: no apptainer in ((null))
[2026-03-09 22:08:35] apptainer is not installed, using version from CVMFS
[2026-03-09 22:08:35] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-09 22:08:35] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot96/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut21.grid.cesnet.cz
[2026-03-09 22:08:35] apptainer works
[2026-03-09 22:08:35] Set ATHENA_PROC_NUMBER=4
[2026-03-09 22:08:35] Set ATHENA_CORE_NUMBER=4
[2026-03-09 22:08:35] Starting ATLAS job with PandaID=7040188445
[2026-03-09 22:08:35] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot96/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-09 23:34:08]  *** The last 200 lines of the pilot log: ***
[2026-03-09 23:34:08]  scope=mc23_13p6TeV
[2026-03-09 23:34:08]  status=None
[2026-03-09 23:34:08]  status_code=0
[2026-03-09 23:34:08]  storage_token=
[2026-03-09 23:34:08]  surl=/var/lib/boinc/var/slot96/slots/1/PanDA_Pilot-7040188445/log.48955006._028846.job.log.tgz.1
[2026-03-09 23:34:08]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fc/28/log.48955006._028846.job.log.tgz.1
[2026-03-09 23:34:08]  workdir=None
[2026-03-09 23:34:08] ]
[2026-03-09 23:34:08] 2026-03-09 22:33:32,941 | INFO     | transferring file log.48955006._028846.job.log.tgz.1 from /var/lib/boinc/var/slot96/slots/1/PanDA_Pilot-7040188445/log.48955006._028846.job.log.tgz.1 to /var/lib/b
[2026-03-09 23:34:08] 2026-03-09 22:33:32,941 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot96/slots/1/PanDA_Pilot-7040188445/log.48955006._028846.job.log.tgz.1 /var/lib/boinc/var/slot96/slots/1/lo
[2026-03-09 23:34:08] 2026-03-09 22:33:32,956 | INFO     | adding to output.list: log.48955006._028846.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fc/28/log.48955006._028846.job.log.tg
[2026-03-09 23:34:08] 2026-03-09 22:33:32,957 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-09 23:34:08] 2026-03-09 22:33:32,957 | INFO     | summary of transferred files:
[2026-03-09 23:34:08] 2026-03-09 22:33:32,957 | INFO     |  -- lfn=log.48955006._028846.job.log.tgz.1, status_code=0, status=transferred
[2026-03-09 23:34:08] 2026-03-09 22:33:32,957 | INFO     | stage-out finished correctly
[2026-03-09 23:34:08] 2026-03-09 22:33:34,598 | INFO     | time since job start (5086s) is within the limit (349056.0s)
[2026-03-09 23:34:08] 2026-03-09 22:33:34,666 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-09 23:34:08] 2026-03-09 22:33:34,712 | INFO     | job 7040188445 has state=finished
[2026-03-09 23:34:08] 2026-03-09 22:33:34,712 | INFO     | preparing for final server update for job 7040188445 in state='finished'
[2026-03-09 23:34:08] 2026-03-09 22:33:34,712 | INFO     | reading metadata from: /var/lib/boinc/var/slot96/slots/1/PanDA_Pilot-7040188445/jobReport.json
[2026-03-09 23:34:08] 2026-03-09 22:33:34,714 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot96/slots/1/workernode_map.json
[2026-03-09 23:34:08] 2026-03-09 22:33:34,714 | INFO     | this job has now completed (state=finished)
[2026-03-09 23:34:08] 2026-03-09 22:33:34,714 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-09 23:34:08] 2026-03-09 22:33:34,714 | INFO     | log transfer has been attempted: DONE
[2026-03-09 23:34:08] 2026-03-09 22:33:34,714 | INFO     | job 7040188445 has finished - writing final server update
[2026-03-09 23:34:08] 2026-03-09 22:33:34,714 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_3827266/.job.ad'
[2026-03-09 23:34:08] 2026-03-09 22:33:34,714 | INFO     | total number of processed events: 400 (read)
[2026-03-09 23:34:08] 2026-03-09 22:33:34,733 | INFO     | using path: /var/lib/boinc/var/slot96/slots/1/PanDA_Pilot-7040188445/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 23:34:08] 2026-03-09 22:33:34,734 | INFO     | extracted standard info from prmon json
[2026-03-09 23:34:08] 2026-03-09 22:33:34,734 | INFO     | extracted standard memory fields from prmon json
[2026-03-09 23:34:08] 2026-03-09 22:33:34,734 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-09 23:34:08] 2026-03-09 22:33:34,734 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-09 23:34:08] 2026-03-09 22:33:34,734 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-09 23:34:08] 2026-03-09 22:33:34,735 | INFO     | fitting pss+swap vs Time
[2026-03-09 23:34:08] 2026-03-09 22:33:34,735 | INFO     | sum of square deviations: 136095575.0
[2026-03-09 23:34:08] 2026-03-09 22:33:34,736 | INFO     | sum of deviations: 838134327.0
[2026-03-09 23:34:08] 2026-03-09 22:33:34,736 | INFO     | mean x: 1773093142.5
[2026-03-09 23:34:08] 2026-03-09 22:33:34,736 | INFO     | mean y: 2327886.236842105
[2026-03-09 23:34:08] 2026-03-09 22:33:34,736 | INFO     | intersect: -10917132409.93776
[2026-03-09 23:34:08] 2026-03-09 22:33:34,736 | INFO     | chi2: 0.000203558164559153
[2026-03-09 23:34:08] 2026-03-09 22:33:34,736 | INFO     | current memory leak: 6.16 B/s (using 76 data points, chi2=0.00)
[2026-03-09 23:34:08] 2026-03-09 22:33:34,736 | INFO     | could have reported an average CPU frequency of 3573 MHz (6 samples)
[2026-03-09 23:34:08] 2026-03-09 22:33:34,736 | INFO     | ..............................
[2026-03-09 23:34:08] 2026-03-09 22:33:34,736 | INFO     | . Timing measurements:
[2026-03-09 23:34:08] 2026-03-09 22:33:34,736 | INFO     | . get job = 0 s
[2026-03-09 23:34:08] 2026-03-09 22:33:34,736 | INFO     | . initial setup = 5 s
[2026-03-09 23:34:08] 2026-03-09 22:33:34,736 | INFO     | . payload setup = 5 s
[2026-03-09 23:34:08] 2026-03-09 22:33:34,736 | INFO     | . stage-in = 0 s
[2026-03-09 23:34:08] 2026-03-09 22:33:34,736 | INFO     | . payload execution = 5063 s
[2026-03-09 23:34:08] 2026-03-09 22:33:34,736 | INFO     | . stage-out = 0 s
[2026-03-09 23:34:08] 2026-03-09 22:33:34,736 | INFO     | . log creation = 0 s
[2026-03-09 23:34:08] 2026-03-09 22:33:34,736 | INFO     | ..............................
[2026-03-09 23:34:08] 2026-03-09 22:33:35,174 | INFO     | 
[2026-03-09 23:34:08] 2026-03-09 22:33:35,175 | INFO     | job summary report
[2026-03-09 23:34:08] 2026-03-09 22:33:35,175 | INFO     | --------------------------------------------------
[2026-03-09 23:34:08] 2026-03-09 22:33:35,175 | INFO     | PanDA job id: 7040188445
[2026-03-09 23:34:08] 2026-03-09 22:33:35,175 | INFO     | task id: 48955006
[2026-03-09 23:34:08] 2026-03-09 22:33:35,175 | INFO     | errors: (none)
[2026-03-09 23:34:08] 2026-03-09 22:33:35,175 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-09 23:34:08] 2026-03-09 22:33:35,175 | INFO     | pilot state: finished 
[2026-03-09 23:34:08] 2026-03-09 22:33:35,175 | INFO     | transexitcode: 0
[2026-03-09 23:34:08] 2026-03-09 22:33:35,175 | INFO     | exeerrorcode: 0
[2026-03-09 23:34:08] 2026-03-09 22:33:35,175 | INFO     | exeerrordiag: 
[2026-03-09 23:34:08] 2026-03-09 22:33:35,175 | INFO     | exitcode: 0
[2026-03-09 23:34:08] 2026-03-09 22:33:35,175 | INFO     | exitmsg: OK
[2026-03-09 23:34:08] 2026-03-09 22:33:35,175 | INFO     | cpuconsumptiontime: 19487 s
[2026-03-09 23:34:08] 2026-03-09 22:33:35,175 | INFO     | nevents: 400
[2026-03-09 23:34:08] 2026-03-09 22:33:35,175 | INFO     | neventsw: 0
[2026-03-09 23:34:08] 2026-03-09 22:33:35,175 | INFO     | pid: 3853527
[2026-03-09 23:34:08] 2026-03-09 22:33:35,175 | INFO     | pgrp: 3853527
[2026-03-09 23:34:08] 2026-03-09 22:33:35,175 | INFO     | corecount: 4
[2026-03-09 23:34:08] 2026-03-09 22:33:35,175 | INFO     | event service: False
[2026-03-09 23:34:08] 2026-03-09 22:33:35,175 | INFO     | sizes: {0: 2280243, 11: 2280243, 5072: 2306613, 5073: 2315633, 5074: 2315689, 5075: 2315883}
[2026-03-09 23:34:08] 2026-03-09 22:33:35,175 | INFO     | --------------------------------------------------
[2026-03-09 23:34:08] 2026-03-09 22:33:35,175 | INFO     | 
[2026-03-09 23:34:08] 2026-03-09 22:33:35,175 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot96/slots/1
[2026-03-09 23:34:08] 2026-03-09 22:33:35,192 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-09 23:34:08] 2026-03-09 22:33:35,192 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-09 23:34:08] 2026-03-09 22:33:35,192 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-09 23:34:08] 2026-03-09 22:33:35,193 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-09 23:34:08] 2026-03-09 22:33:35,193 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-09 23:34:08] 2026-03-09 22:33:35,193 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-09 23:34:08] 2026-03-09 22:33:35,193 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-09 23:34:08] 2026-03-09 22:33:35,193 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-09 23:34:08] 2026-03-09 22:33:35,193 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-09 23:34:08] 2026-03-09 22:33:35,193 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-09 23:34:08] 2026-03-09 22:33:35,193 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-09 23:34:08] 2026-03-09 22:33:35,193 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-09 23:34:08] 2026-03-09 22:33:35,193 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-09 23:34:08] 2026-03-09 22:33:35,193 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-09 23:34:08] 2026-03-09 22:33:35,193 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-09 23:34:08] 2026-03-09 22:33:35,193 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-09 23:34:08] 2026-03-09 22:33:35,193 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-09 23:34:08] 2026-03-09 22:33:35,193 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-09 23:34:08] 2026-03-09 22:33:35,193 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-09 23:34:08] 2026-03-09 22:33:35,193 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-09 23:34:08] 2026-03-09 22:33:35,193 | INFO     | job 7040188445 has completed (purged errors)
[2026-03-09 23:34:08] 2026-03-09 22:33:35,193 | INFO     | overall cleanup function is called
[2026-03-09 23:34:08] 2026-03-09 22:33:36,199 | INFO     | --- collectZombieJob: --- 10, [3853527]
[2026-03-09 23:34:08] 2026-03-09 22:33:36,200 | INFO     | zombie collector waiting for pid 3853527
[2026-03-09 23:34:08] 2026-03-09 22:33:36,200 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-09 23:34:08] 2026-03-09 22:33:36,200 | INFO     | collected zombie processes
[2026-03-09 23:34:08] 2026-03-09 22:33:36,200 | INFO     | will attempt to kill all subprocesses of pid=3853527
[2026-03-09 23:34:08] 2026-03-09 22:33:37,583 | INFO     | process IDs to be killed: [3853527] (in reverse order)
[2026-03-09 23:34:08] 2026-03-09 22:33:37,615 | WARNING  | process 3853527 can no longer be monitored (due to stat problems) - aborting
[2026-03-09 23:34:08] 2026-03-09 22:33:37,809 | WARNING  | found no corresponding commands to process id(s)
[2026-03-09 23:34:08] 2026-03-09 22:33:37,809 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-09 23:34:08] 2026-03-09 22:33:37,879 | INFO     | did not find any defunct processes belonging to 3853527
[2026-03-09 23:34:08] 2026-03-09 22:33:37,945 | INFO     | did not find any defunct processes belonging to 3853527
[2026-03-09 23:34:08] 2026-03-09 22:33:37,945 | INFO     | ready for new job
[2026-03-09 23:34:08] 2026-03-09 22:33:37,945 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-09 23:34:08] 2026-03-09 22:33:37,946 | INFO     | **************************************
[2026-03-09 23:34:08] 2026-03-09 22:33:37,946 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-09 23:34:08] 2026-03-09 22:33:37,946 | INFO     | **************************************
[2026-03-09 23:34:08] 2026-03-09 22:33:37,946 | INFO     | 
[2026-03-09 23:34:08] 2026-03-09 22:33:37,957 | INFO     | architecture information:
[2026-03-09 23:34:08] 2026-03-09 22:33:37,960 | INFO     | executing command: cat /etc/os-release
[2026-03-09 23:34:08] 2026-03-09 22:33:37,973 | INFO     | cat /etc/os-release:
[2026-03-09 23:34:08] NAME="CentOS Linux"
[2026-03-09 23:34:08] VERSION="7 (Core)"
[2026-03-09 23:34:08] ID="centos"
[2026-03-09 23:34:08] ID_LIKE="rhel fedora"
[2026-03-09 23:34:08] VERSION_ID="7"
[2026-03-09 23:34:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-09 23:34:08] ANSI_COLOR="0;31"
[2026-03-09 23:34:08] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-09 23:34:08] HOME_URL="https://www.centos.org/"
[2026-03-09 23:34:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-09 23:34:08] 
[2026-03-09 23:34:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-09 23:34:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-09 23:34:08] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-09 23:34:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-09 23:34:08] 
[2026-03-09 23:34:08] 2026-03-09 22:33:37,973 | INFO     | **************************************
[2026-03-09 23:34:08] 2026-03-09 22:33:38,027 | INFO     | using path: /var/lib/boinc/var/slot96/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 23:34:08] 2026-03-09 22:33:38,027 | INFO     | using path: /var/lib/boinc/var/slot96/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 23:34:08] 2026-03-09 22:33:38,027 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-09 23:34:08] 2026-03-09 22:33:38,028 | WARNING  | maxPSS not found in memory monitor output
[2026-03-09 23:34:08] 2026-03-09 22:33:38,028 | INFO     | skipping file size check of payload stdout file (/var/lib/boinc/var/slot96/slots/1/PanDA_Pilot-7040188445/payload.stdout) since it has not been created yet
[2026-03-09 23:34:08] 2026-03-09 22:33:38,028 | INFO     | executing command: df -mP /var/lib/boinc/var/slot96/slots/1
[2026-03-09 23:34:08] 2026-03-09 22:33:38,042 | INFO     | sufficient remaining disk space (20780679168 B)
[2026-03-09 23:34:08] 2026-03-09 22:33:38,042 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-03-09 23:34:08] 2026-03-09 22:33:38,042 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot96/slots/1/PanDA_Pilot-7040188445/HITS.48955006._028846.pool.root.1 since it does not exist
[2026-03-09 23:34:08] 2026-03-09 22:33:38,476 | INFO     | executing command: df -mP /var/lib/boinc/var/slot96/slots/1
[2026-03-09 23:34:08] 2026-03-09 22:33:38,491 | INFO     | sufficient remaining disk space (20780679168 B)
[2026-03-09 23:34:08] 2026-03-09 22:33:38,491 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-09 23:34:08] 2026-03-09 22:33:38,491 | INFO     | current server update state: UPDATING_FINAL
[2026-03-09 23:34:08] 2026-03-09 22:33:38,491 | INFO     | update_server=False
[2026-03-09 23:34:08] 2026-03-09 22:33:38,491 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-09 23:34:08] 2026-03-09 22:33:38,497 | INFO     | number of running child processes to parent process 3853527: 1
[2026-03-09 23:34:08] 2026-03-09 22:33:38,497 | INFO     | maximum number of monitored processes: 6
[2026-03-09 23:34:08] 2026-03-09 22:33:38,497 | INFO     | aborting job monitoring since job object (job id=7040188445) has expired
[2026-03-09 23:34:08] 2026-03-09 22:33:38,497 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-09 23:34:08] 2026-03-09 22:33:38,497 | INFO     | will abort loop
[2026-03-09 23:34:08] 2026-03-09 22:33:38,516 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-09 23:34:08] 2026-03-09 22:33:39,370 | INFO     | all data control threads have been joined
[2026-03-09 23:34:08] 2026-03-09 22:33:39,472 | INFO     | all payload control threads have been joined
[2026-03-09 23:34:08] 2026-03-09 22:33:39,497 | INFO     | [job] retrieve thread has finished
[2026-03-09 23:34:08] 2026-03-09 22:33:39,503 | INFO     | [job] job monitor thread has finished
[2026-03-09 23:34:08] 2026-03-09 22:33:39,682 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-09 23:34:08] 2026-03-09 22:33:39,797 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-09 23:34:08] 2026-03-09 22:33:39,840 | INFO     | [payload] validate_post thread has finished
[2026-03-09 23:34:08] 2026-03-09 22:33:39,939 | INFO     | [data] copytool_in thread has finished
[2026-03-09 23:34:08] 2026-03-09 22:33:40,175 | INFO     | all job control threads have been joined
[2026-03-09 23:34:08] 2026-03-09 22:33:40,375 | INFO     | [data] control thread has finished
[2026-03-09 23:34:08] 2026-03-09 22:33:40,478 | INFO     | [payload] control thread has finished
[2026-03-09 23:34:08] 2026-03-09 22:33:40,521 | INFO     | [data] copytool_out thread has finished
[2026-03-09 23:34:08] 2026-03-09 22:33:40,583 | INFO     | [payload] execute_payloads thread has finished
[2026-03-09 23:34:08] 2026-03-09 22:33:40,648 | INFO     | [payload] failed_post thread has finished
[2026-03-09 23:34:08] 2026-03-09 22:33:40,721 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-09 23:34:08] 2026-03-09 22:33:40,802 | INFO     | [job] queue monitor thread has finished
[2026-03-09 23:34:08] 2026-03-09 22:33:40,860 | INFO     | [job] validate thread has finished
[2026-03-09 23:34:08] 2026-03-09 22:33:40,878 | INFO     | [payload] validate_pre thread has finished
[2026-03-09 23:34:08] 2026-03-09 22:33:40,900 | INFO     | [job] create_data_payload thread has finished
[2026-03-09 23:34:08] 2026-03-09 22:33:41,181 | INFO     | [job] control thread has finished
[2026-03-09 23:34:08] 2026-03-09 22:33:44,727 | INFO     | [data] queue_monitor thread has finished
[2026-03-09 23:34:08] 2026-03-09 22:33:56,969 | INFO     | [monitor] cgroup control has ended
[2026-03-09 23:34:08] 2026-03-09 22:33:57,208 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22928814356288)>', '<ExcThread(monitor, started 22928568874752)>']
[2026-03-09 23:34:08] 2026-03-09 22:34:02,232 | INFO     | all workflow threads have been joined
[2026-03-09 23:34:08] 2026-03-09 22:34:02,233 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-09 23:34:08] 2026-03-09 22:34:02,233 | INFO     | traces error code: 0
[2026-03-09 23:34:08] 2026-03-09 22:34:02,233 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-09 23:34:08] 2026-03-09 22:34:08,154 | INFO     | PID=3839258 has CPU usage=10.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-09 23:34:08] 2026-03-09 22:34:08,155 | INFO     | .. there are 60 such processes running
[2026-03-09 23:34:08] 2026-03-09 22:34:08,155 | INFO     | found 0 job(s) in 20 queues
[2026-03-09 23:34:08] 2026-03-09 22:34:08,155 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-09 23:34:08] 2026-03-09 22:34:08,155 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-09 23:34:08] 2026-03-09 22:34:08,155 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-09 23:34:08] 2026-03-09 22:34:08,155 | INFO     | [monitor] control thread has ended
[2026-03-09 23:34:08] 2026-03-09 22:34:08,288 [wrapper] ==== pilot stdout END ====
[2026-03-09 23:34:08] 2026-03-09 22:34:08,293 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-09 23:34:08] 2026-03-09 22:34:08,295 [wrapper] pilotpid: 3839258
[2026-03-09 23:34:08] 2026-03-09 22:34:08,297 [wrapper] Pilot exit status: 0
[2026-03-09 23:34:08] 2026-03-09 22:34:08,304 [wrapper] pandaids: 7040188445
[2026-03-09 23:34:08] 2026-03-09 22:34:08,421 [wrapper] cleanup supervisor_pilot  517461 3839259
[2026-03-09 23:34:08] 2026-03-09 22:34:08,425 [wrapper] Test setup, not cleaning
[2026-03-09 23:34:08] 2026-03-09 22:34:08,428 [wrapper] apfmon messages muted
[2026-03-09 23:34:08] 2026-03-09 22:34:08,431 [wrapper] ==== wrapper stdout END ====
[2026-03-09 23:34:08] 2026-03-09 22:34:08,433 [wrapper] ==== wrapper stderr END ====
[2026-03-09 23:34:08]  *** Error codes and diagnostics ***
[2026-03-09 23:34:08]     "exeErrorCode": 0,
[2026-03-09 23:34:08]     "exeErrorDiag": "",
[2026-03-09 23:34:08]     "pilotErrorCode": 0,
[2026-03-09 23:34:08]     "pilotErrorDiag": "",
[2026-03-09 23:34:08]  *** Listing of results directory ***
[2026-03-09 23:34:08] total 624120
[2026-03-09 23:34:08] -rw-r--r--. 1 boinc boinc    584627 Mar  8 20:47 pilot3.tar.gz
[2026-03-09 23:34:08] -rwx------. 1 boinc boinc     36322 Mar  8 20:50 runpilot2-wrapper.sh
[2026-03-09 23:34:08] -rw-r--r--. 1 boinc boinc      5111 Mar  8 20:52 queuedata.json
[2026-03-09 23:34:08] -rw-r--r--. 1 boinc boinc       100 Mar  9 22:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-09 23:34:08] -rwxr-xr-x. 1 boinc boinc      7986 Mar  9 22:08 run_atlas
[2026-03-09 23:34:08] -rw-r--r--. 1 boinc boinc       105 Mar  9 22:08 job.xml
[2026-03-09 23:34:08] -rw-r--r--. 1 boinc boinc      6707 Mar  9 22:08 init_data.xml
[2026-03-09 23:34:08] -rw-r--r--. 2 boinc boinc 445769582 Mar  9 22:08 EVNT.46701403._000577.pool.root.1
[2026-03-09 23:34:08] -rw-r--r--. 2 boinc boinc     15845 Mar  9 22:08 start_atlas.sh
[2026-03-09 23:34:08] drwxrwx--x. 2 boinc boinc      4096 Mar  9 22:08 shared
[2026-03-09 23:34:08] -rw-r--r--. 2 boinc boinc    597952 Mar  9 22:08 input.tar.gz
[2026-03-09 23:34:08] -rw-r--r--. 1 boinc boinc         0 Mar  9 22:08 boinc_lockfile
[2026-03-09 23:34:08] -rw-r--r--. 1 boinc boinc      2565 Mar  9 22:08 pandaJob.out
[2026-03-09 23:34:08] -rw-------. 1 boinc boinc   1002738 Mar  9 22:08 agis_schedconf.cvmfs.json
[2026-03-09 23:34:08] -rw-------. 1 boinc boinc   1511578 Mar  9 22:08 agis_ddmendpoints.agis.ALL.json
[2026-03-09 23:34:08] -rw-------. 1 boinc boinc       444 Mar  9 22:08 workernode_map.json
[2026-03-09 23:34:08] drwx------. 5 boinc boinc      4096 Mar  9 22:08 pilot3
[2026-03-09 23:34:08] -rw-r--r--. 1 boinc boinc       530 Mar  9 23:33 boinc_task_state.xml
[2026-03-09 23:34:08] -rw-------. 1 boinc boinc 187328089 Mar  9 23:33 HITS.48955006._028846.pool.root.1
[2026-03-09 23:34:08] -rw-------. 1 boinc boinc      1032 Mar  9 23:33 memory_monitor_summary.json
[2026-03-09 23:34:08] -rw-------. 1 boinc boinc    288979 Mar  9 23:33 log.48955006._028846.job.log.tgz.1
[2026-03-09 23:34:08] -rw-------. 1 boinc boinc        95 Mar  9 23:33 pilot_heartbeat.json
[2026-03-09 23:34:08] -rw-------. 1 boinc boinc      6361 Mar  9 23:33 heartbeat.json
[2026-03-09 23:34:08] -rw-r--r--. 1 boinc boinc        27 Mar  9 23:33 wrapper_checkpoint.txt
[2026-03-09 23:34:08] -rw-r--r--. 1 boinc boinc      8192 Mar  9 23:33 boinc_mmap_file
[2026-03-09 23:34:08] -rw-------. 1 boinc boinc       824 Mar  9 23:34 pilotlog.txt
[2026-03-09 23:34:08] -rw-------. 1 boinc boinc    743635 Mar  9 23:34 log.48955006._028846.job.log.1
[2026-03-09 23:34:08] -rw-------. 1 boinc boinc       357 Mar  9 23:34 output.list
[2026-03-09 23:34:08] -rw-r--r--. 1 boinc boinc       620 Mar  9 23:34 runtime_log
[2026-03-09 23:34:08] -rw-------. 1 boinc boinc   1054720 Mar  9 23:34 result.tar.gz
[2026-03-09 23:34:08] -rw-r--r--. 1 boinc boinc      9204 Mar  9 23:34 runtime_log.err
[2026-03-09 23:34:08] -rw-------. 1 boinc boinc       663 Mar  9 23:34 3CKLDmGKZJ9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmJCaLDmyHTcFm.diag
[2026-03-09 23:34:08] -rw-r--r--. 1 boinc boinc     22039 Mar  9 23:34 stderr.txt
[2026-03-09 23:34:08] HITS file was successfully produced:
[2026-03-09 23:34:08] -rw-------. 1 boinc boinc 187328089 Mar  9 23:33 shared/HITS.pool.root.1
[2026-03-09 23:34:08]  *** Contents of shared directory: ***
[2026-03-09 23:34:08] total 619904
[2026-03-09 23:34:08] -rw-r--r--. 2 boinc boinc 445769582 Mar  9 22:08 ATLAS.root_0
[2026-03-09 23:34:08] -rw-r--r--. 2 boinc boinc     15845 Mar  9 22:08 start_atlas.sh
[2026-03-09 23:34:08] -rw-r--r--. 2 boinc boinc    597952 Mar  9 22:08 input.tar.gz
[2026-03-09 23:34:08] -rw-------. 1 boinc boinc 187328089 Mar  9 23:33 HITS.pool.root.1
[2026-03-09 23:34:08] -rw-------. 1 boinc boinc   1054720 Mar  9 23:34 result.tar.gz
23:34:10 (3834726): run_atlas exited; CPU time 19682.549781
23:34:10 (3834726): called boinc_finish(0)

</stderr_txt>
]]>

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