Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
2026-03-09 17:33:46 (2780): vboxwrapper version 26210
2026-03-09 17:33:46 (2780): BOINC client version: 8.2.8
2026-03-09 17:33:47 (2780): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2026-03-09 17:33:48 (2780): Successfully copied 'init_data.xml' to the shared directory.
2026-03-09 17:33:48 (2780): Create VM. (boinc_5c72347b5854042b, slot#14)
2026-03-09 17:33:49 (2780): Setting Memory Size for VM. (4800MB)
2026-03-09 17:33:49 (2780): Setting CPU Count for VM. (8)
2026-03-09 17:33:50 (2780): Setting Chipset Options for VM.
2026-03-09 17:33:50 (2780): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2026-03-09 17:33:51 (2780): Setting Boot Options for VM.
2026-03-09 17:33:52 (2780): Setting Network Configuration for NAT. (Driver: virtio)
2026-03-09 17:33:52 (2780): Enabling VM Network Access.
2026-03-09 17:33:52 (2780): Disabling USB Support for VM.
2026-03-09 17:33:53 (2780): Disabling COM Port Support for VM.
2026-03-09 17:33:53 (2780): Disabling LPT Port Support for VM.
2026-03-09 17:33:54 (2780): Disabling Audio Support for VM.
2026-03-09 17:33:54 (2780): Disabling Clipboard Support for VM.
2026-03-09 17:33:54 (2780): Disabling Drag and Drop Support for VM.
2026-03-09 17:33:55 (2780): Adding storage controller(s) to VM.
2026-03-09 17:33:55 (2780): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2026-03-09 17:33:58 (2780): Adding VirtualBox Guest Additions to VM.
2026-03-09 17:33:59 (2780): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2026-03-09 17:33:59 (2780): forwarding host port 1211 to guest port 80
2026-03-09 17:34:00 (2780): Enabling remote desktop for VM.
2026-03-09 17:34:00 (2780): Required extension pack not installed, remote desktop not enabled.
2026-03-09 17:34:00 (2780): Enabling shared directory for VM.
2026-03-09 17:34:01 (2780): Starting VM using VBoxManage interface. (boinc_5c72347b5854042b, slot#14)
2026-03-09 17:34:12 (2780): Successfully started VM. (PID = '24248')
2026-03-09 17:34:12 (2780): Reporting VM Process ID to BOINC.
2026-03-09 17:34:12 (2780): Guest Log: BIOS: VirtualBox 7.0.6
2026-03-09 17:34:12 (2780): Guest Log: CPUID EDX: 0x178bfbff
2026-03-09 17:34:12 (2780): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2026-03-09 17:34:12 (2780): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2026-03-09 17:34:12 (2780): VM state change detected. (old = 'poweredoff', new = 'running')
2026-03-09 17:34:12 (2780): Detected: Web Application Enabled (http://localhost:1211)
2026-03-09 17:34:12 (2780): Preference change detected
2026-03-09 17:34:12 (2780): Setting CPU throttle for VM. (60%)
2026-03-09 17:34:12 (2780): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2026-03-09 17:34:14 (2780): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2026-03-09 17:34:14 (2780): Guest Log: BIOS: Booting from Hard Disk...
2026-03-09 17:34:19 (2780): Guest Log: BIOS: KBD: unsupported int 16h function 03
2026-03-09 17:34:19 (2780): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2026-03-09 17:34:19 (2780): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2026-03-09 17:34:19 (2780): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2026-03-09 17:34:19 (2780): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2026-03-09 17:34:19 (2780): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2026-03-09 17:34:19 (2780): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2026-03-09 17:34:19 (2780): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2026-03-09 17:34:19 (2780): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2026-03-09 17:34:19 (2780): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2026-03-09 17:34:19 (2780): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2026-03-09 17:34:19 (2780): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2026-03-09 17:34:19 (2780): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2026-03-09 17:34:19 (2780): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2026-03-09 17:34:19 (2780): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2026-03-09 17:34:19 (2780): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2026-03-09 17:34:19 (2780): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2026-03-09 17:34:19 (2780): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2026-03-09 17:34:19 (2780): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2026-03-09 17:34:19 (2780): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2026-03-09 17:34:19 (2780): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2026-03-09 17:34:19 (2780): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2026-03-09 17:34:19 (2780): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2026-03-09 17:34:19 (2780): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2026-03-09 17:34:19 (2780): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2026-03-09 17:34:19 (2780): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2026-03-09 17:34:19 (2780): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2026-03-09 17:34:19 (2780): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2026-03-09 17:34:19 (2780): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2026-03-09 17:34:19 (2780): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2026-03-09 17:34:19 (2780): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2026-03-09 17:34:19 (2780): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2026-03-09 17:34:31 (2780): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2026-03-09 17:34:31 (2780): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2026-03-09 17:34:51 (2780): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2026-03-09 17:34:51 (2780): Guest Log: 00:00:00.000310 main     Log opened 2026-03-09T17:34:49.787034000Z
2026-03-09 17:34:51 (2780): Guest Log: 00:00:00.000545 main     OS Product: Linux
2026-03-09 17:34:51 (2780): Guest Log: 00:00:00.000614 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2026-03-09 17:34:51 (2780): Guest Log: 00:00:00.000676 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2026-03-09 17:34:51 (2780): Guest Log: 00:00:00.000740 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2026-03-09 17:34:51 (2780): Guest Log: 00:00:00.000742 main     Process ID: 1367
2026-03-09 17:34:51 (2780): Guest Log: 00:00:00.000744 main     Package type: LINUX_64BITS_GENERIC
2026-03-09 17:34:51 (2780): Guest Log: 00:00:00.002255 main     5.2.32 r132073 started. Verbose level = 0
2026-03-09 17:34:51 (2780): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2026-03-09 17:34:51 (2780): Guest Log: [INFO] Mounting shared directory
2026-03-09 17:34:51 (2780): Guest Log: [INFO] Checking for init_data.xml
2026-03-09 17:35:01 (2780): Guest Log: 00:00:10.007486 timesync vgsvcTimeSyncWorker: Radical guest time change: -28 788 563 732 000ns (GuestNow=1 773 048 901 227 705 000 ns GuestLast=1 773 077 689 791 437 000 ns fSetTimeLastLoop=true )
2026-03-09 17:35:55 (2780): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2026-03-09 17:35:55 (2780): Guest Log: [INFO] Detected branch: prod
2026-03-09 17:35:56 (2780): Guest Log: This is the prod version of the ATLAS job wrapper
2026-03-09 17:35:56 (2780): Guest Log: Copying input files
2026-03-09 17:36:04 (2780): Guest Log: Copied input files into RunAtlas.
2026-03-09 17:36:05 (2780): Guest Log: This VM did not configure a local http proxy via BOINC.
2026-03-09 17:36:05 (2780): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2026-03-09 17:36:05 (2780): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2026-03-09 17:36:05 (2780): Guest Log: Further information can be found at the LHC@home message board.
2026-03-09 17:36:18 (2780): Guest Log: Running cvmfs_config stat atlas.cern.ch
2026-03-09 17:36:19 (2780): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2026-03-09 17:36:19 (2780): Guest Log: 2.6.3.0 1670 0 30164 157071 4 1 3117743 4096001 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2026-03-09 17:36:21 (2780): Guest Log: copied the webapp to /var/www
2026-03-09 17:36:21 (2780): Guest Log: ATHENA_PROC_NUMBER=8
2026-03-09 17:36:21 (2780): Guest Log: ATHENA_CORE_NUMBER=8
2026-03-09 17:36:21 (2780): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2026-03-09 17:36:21 (2780): Guest Log:  *** Starting ATLAS job. (PandaID=7040381348 taskID=48955015) ***
2026-03-09 18:00:06 (2780): VM state change detected. (old = 'running', new = 'paused')
2026-03-09 18:00:27 (2780): VM state change detected. (old = 'paused', new = 'running')
2026-03-09 19:14:41 (2780): Status Report: Elapsed Time: '6000.000000'
2026-03-09 19:14:41 (2780): Status Report: CPU Time: '13707.625000'
2026-03-09 20:54:55 (2780): Status Report: Elapsed Time: '12000.000000'
2026-03-09 20:54:55 (2780): Status Report: CPU Time: '42605.531250'
2026-03-09 22:35:09 (2780): Status Report: Elapsed Time: '18000.000000'
2026-03-09 22:35:09 (2780): Status Report: CPU Time: '71504.390625'
2026-03-09 22:53:00 (2780): VM state change detected. (old = 'running', new = 'paused')
2026-03-10 01:25:18 (2780): VM state change detected. (old = 'paused', new = 'running')
2026-03-10 01:25:22 (2780): Guest Log: 05:18:00.278651 timesync vgsvcTimeSyncWorker: Radical host time change: 9 147 601 000 000ns (HostNow=1 773 077 121 127 000 000 ns HostLast=1 773 067 973 526 000 000 ns)
2026-03-10 01:25:32 (2780): Guest Log: 05:18:10.319435 timesync vgsvcTimeSyncWorker: Radical guest time change: 9 159 669 696 000ns (GuestNow=1 773 077 131 168 207 000 ns GuestLast=1 773 067 971 498 511 000 ns fSetTimeLastLoop=true )
2026-03-10 01:26:28 (2780): VM state change detected. (old = 'running', new = 'paused')
2026-03-10 01:26:48 (2780): VM state change detected. (old = 'paused', new = 'running')
2026-03-10 02:47:57 (2780): Status Report: Elapsed Time: '24000.000000'
2026-03-10 02:47:57 (2780): Status Report: CPU Time: '100451.890625'
2026-03-10 04:28:17 (2780): Status Report: Elapsed Time: '30000.173811'
2026-03-10 04:28:17 (2780): Status Report: CPU Time: '129197.218750'
2026-03-10 04:34:49 (2780): Guest Log:  *** Job finished ***
2026-03-10 04:34:49 (2780): Guest Log:  *** The last 20 lines of the pilot log: ***
2026-03-10 04:34:49 (2780): Guest Log: 2026-03-09 20:34:20,546 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2026-03-10 04:34:49 (2780): Guest Log: 2026-03-09 20:34:20,546 | WARNING  | will wait for a maximum of 300 s for threads to finish
2026-03-10 04:34:49 (2780): Guest Log: 2026-03-09 20:34:27,189 | INFO     | [monitor] cgroup control has ended
2026-03-10 04:34:49 (2780): Guest Log: 2026-03-09 20:34:27,961 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139758004246336)>', '<ExcThread(monitor, started 139757245929216)>']
2026-03-10 04:34:49 (2780): Guest Log: 2026-03-09 20:34:28,651 | WARNING  | job_aborted has been set - aborting pilot monitoring
2026-03-10 04:34:49 (2780): Guest Log: 2026-03-09 20:34:28,651 | INFO     | [monitor] control thread has ended
2026-03-10 04:34:49 (2780): Guest Log: 2026-03-09 20:34:32,968 | INFO     | all workflow threads have been joined
2026-03-10 04:34:49 (2780): Guest Log: 2026-03-09 20:34:32,968 | INFO     | end of generic workflow (traces error code: 0)
2026-03-10 04:34:49 (2780): Guest Log: 2026-03-09 20:34:32,968 | INFO     | traces error code: 0
2026-03-10 04:34:49 (2780): Guest Log: 2026-03-09 20:34:32,969 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2026-03-10 04:34:49 (2780): Guest Log: 2026-03-09 20:34:33,215 [wrapper] ==== pilot stdout END ====
2026-03-10 04:34:49 (2780): Guest Log: 2026-03-09 20:34:33,223 [wrapper] ==== wrapper stdout RESUME ====
2026-03-10 04:34:49 (2780): Guest Log: 2026-03-09 20:34:33,231 [wrapper] pilotpid: 6144
2026-03-10 04:34:49 (2780): Guest Log: 2026-03-09 20:34:33,239 [wrapper] Pilot exit status: 0
2026-03-10 04:34:49 (2780): Guest Log: 2026-03-09 20:34:33,640 [wrapper] pandaids: 7040381348
2026-03-10 04:34:49 (2780): Guest Log: 2026-03-09 20:34:33,697 [wrapper] cleanup supervisor_pilot 32621 6145
2026-03-10 04:34:49 (2780): Guest Log: 2026-03-09 20:34:33,714 [wrapper] Test setup, not cleaning
2026-03-10 04:34:49 (2780): Guest Log: 2026-03-09 20:34:33,723 [wrapper] apfmon messages muted
2026-03-10 04:34:49 (2780): Guest Log: 2026-03-09 20:34:33,742 [wrapper] ==== wrapper stdout END ====
2026-03-10 04:34:49 (2780): Guest Log: 2026-03-09 20:34:33,750 [wrapper] ==== wrapper stderr END ====
2026-03-10 04:34:49 (2780): Guest Log:  *** Error codes and diagnostics ***
2026-03-10 04:34:49 (2780): Guest Log:     "exeErrorCode": 0,
2026-03-10 04:34:49 (2780): Guest Log:     "exeErrorDiag": "",
2026-03-10 04:34:49 (2780): Guest Log:     "pilotErrorCode": 0,
2026-03-10 04:34:49 (2780): Guest Log:     "pilotErrorDiag": "",
2026-03-10 04:34:49 (2780): Guest Log:  *** Listing of results directory ***
2026-03-10 04:34:49 (2780): Guest Log: total 197336
2026-03-10 04:34:49 (2780): Guest Log: -rw-r--r--. 1 atlas atlas    584627 Mar  9 00:36 pilot3.tar.gz
2026-03-10 04:34:49 (2780): Guest Log: -rwx------. 1 atlas atlas     36322 Mar  9 00:36 runpilot2-wrapper.sh
2026-03-10 04:34:49 (2780): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Mar  9 00:37 queuedata.json
2026-03-10 04:34:49 (2780): Guest Log: -rwxr-xr-x. 1 atlas atlas      8739 Mar  9 09:36 init_data.xml
2026-03-10 04:34:49 (2780): Guest Log: -rwxr-xr-x. 1 atlas atlas    597958 Mar  9 09:36 input.tar.gz
2026-03-10 04:34:49 (2780): Guest Log: -rwxr-xr-x. 1 atlas atlas     15845 Mar  9 09:36 start_atlas.sh
2026-03-10 04:34:49 (2780): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Mar  9 09:36 EVNT.46701403._002223.pool.root.1 -> /data/./ATLAS.root_0
2026-03-10 04:34:49 (2780): Guest Log: -rw-r--r--. 1 atlas atlas      2572 Mar  9 09:36 pandaJob.out
2026-03-10 04:34:49 (2780): Guest Log: -rw-------. 1 atlas atlas       439 Mar  9 09:42 workernode_map.json
2026-03-10 04:34:49 (2780): Guest Log: -rw-------. 1 atlas atlas    987066 Mar  9 09:43 agis_schedconf.cvmfs.json
2026-03-10 04:34:49 (2780): Guest Log: drwx------. 5 atlas atlas      4096 Mar  9 09:43 pilot3
2026-03-10 04:34:49 (2780): Guest Log: -rw-------. 1 atlas atlas 189098145 Mar  9 20:31 HITS.48955015._008640.pool.root.1
2026-03-10 04:34:49 (2780): Guest Log: -rw-------. 1 atlas atlas      1032 Mar  9 20:33 memory_monitor_summary.json
2026-03-10 04:34:49 (2780): Guest Log: -rw-------. 1 atlas atlas   1511578 Mar  9 20:33 agis_ddmendpoints.agis.ALL.json
2026-03-10 04:34:49 (2780): Guest Log: -rw-------. 1 atlas atlas    700003 Mar  9 20:33 log.48955015._008640.job.log.tgz.1
2026-03-10 04:34:49 (2780): Guest Log: -rw-------. 1 atlas atlas      6409 Mar  9 20:33 heartbeat.json
2026-03-10 04:34:49 (2780): Guest Log: -rw-------. 1 atlas atlas        97 Mar  9 20:34 pilot_heartbeat.json
2026-03-10 04:34:49 (2780): Guest Log: -rw-------. 1 atlas atlas      4988 Mar  9 20:34 pilotlog.txt
2026-03-10 04:34:49 (2780): Guest Log: -rw-------. 1 atlas atlas   3863774 Mar  9 20:34 log.48955015._008640.job.log.1
2026-03-10 04:34:49 (2780): Guest Log: -rw-------. 1 atlas atlas       357 Mar  9 20:34 output.list
2026-03-10 04:34:49 (2780): Guest Log: -rw-r--r--. 1 atlas atlas       620 Mar  9 20:34 runtime_log
2026-03-10 04:34:49 (2780): Guest Log: -rw-------. 1 atlas atlas   4577280 Mar  9 20:34 result.tar.gz
2026-03-10 04:34:49 (2780): Guest Log: -rw-r--r--. 1 atlas atlas      8731 Mar  9 20:34 runtime_log.err
2026-03-10 04:34:49 (2780): Guest Log: -rw-------. 1 atlas atlas       653 Mar  9 20:34 PEzMDmLndJ9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmCsaLDmOyzDRo.diag
2026-03-10 04:34:49 (2780): Guest Log: Looking for outputfile HITS.48955015._008640.pool.root.1
2026-03-10 04:34:49 (2780): Guest Log: HITS file was successfully produced
2026-03-10 04:34:49 (2780): Guest Log: -rw-------. 1 atlas atlas 189098145 Mar  9 20:31 /home/atlas/RunAtlas/HITS.48955015._008640.pool.root.1
2026-03-10 04:34:51 (2780): Guest Log: Successfully finished the ATLAS job!
2026-03-10 04:34:51 (2780): Guest Log: Copying the results back to the shared directory!
2026-03-10 04:34:52 (2780): Guest Log:  *** Contents of shared directory: ***
2026-03-10 04:34:52 (2780): Guest Log: total 617820
2026-03-10 04:34:52 (2780): Guest Log: -rwxrwxrwx. 1 root root 438340747 Mar  9 09:33 ATLAS.root_0
2026-03-10 04:34:52 (2780): Guest Log: -rwxrwxrwx. 1 root root 189098145 Mar  9  2026 HITS.pool.root.1
2026-03-10 04:34:52 (2780): Guest Log: -rwxrwxrwx. 1 root root      8739 Mar  9 09:33 init_data.xml
2026-03-10 04:34:52 (2780): Guest Log: -rwxrwxrwx. 1 root root    597958 Mar  9 04:06 input.tar.gz
2026-03-10 04:34:52 (2780): Guest Log: -rwxrwxrwx. 1 root root   4577280 Mar  9  2026 result.tar.gz
2026-03-10 04:34:52 (2780): Guest Log: -rwxrwxrwx. 1 root root     15845 Mar  9 04:06 start_atlas.sh
2026-03-10 04:34:52 (2780): Guest Log:  *** Success! Shutting down the machine. ***
2026-03-10 04:34:52 (2780): VM Completion File Detected.
2026-03-10 04:34:52 (2780): Powering off VM.
2026-03-10 04:34:53 (2780): Successfully stopped VM.
2026-03-10 04:34:53 (2780): Deregistering VM. (boinc_5c72347b5854042b, slot#14)
2026-03-10 04:34:54 (2780): Removing network bandwidth throttle group from VM.
2026-03-10 04:34:54 (2780): Removing VM from VirtualBox.
2026-03-10 04:34:59 (2780): called boinc_finish(0)

</stderr_txt>
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