Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:08:20 (2812475): wrapper (7.7.26015): starting
16:08:20 (2812475): wrapper: running run_atlas (--nthreads 4)
[2026-03-09 16:08:20] Arguments: --nthreads 4
[2026-03-09 16:08:20] Threads: 4
[2026-03-09 16:08:20] Checking for CVMFS
[2026-03-09 16:08:20] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-09 16:08:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-09 16:08:21] Running cvmfs_config stat atlas.cern.ch
[2026-03-09 16:08:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-09 16:08:21] 2.9.2.0 3074 15703 103684 157080 0 49 28761291 36864000 0 130560 0 7082476 99.985 583340 13208 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-09 16:08:21] CVMFS is ok
[2026-03-09 16:08:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-09 16:08:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-09 16:08:21] Further information can be found at the LHC@home message board.
[2026-03-09 16:08:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-09 16:08:21] Checking for apptainer binary...
[2026-03-09 16:08:21] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-09 16:08:21] Running /usr/bin/apptainer --version
[2026-03-09 16:08:21] apptainer version 1.4.1-1.1
[2026-03-09 16:08:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-09 16:08:21] thA314
[2026-03-09 16:08:21] apptainer works
[2026-03-09 16:08:21] Set ATHENA_PROC_NUMBER=4
[2026-03-09 16:08:21] Set ATHENA_CORE_NUMBER=4
[2026-03-09 16:08:21] Starting ATLAS job with PandaID=7040188427
[2026-03-09 16:08:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-09 17:17:48]  *** The last 200 lines of the pilot log: ***
[2026-03-09 17:17:48] 2026-03-09 16:17:16,922 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-09 17:17:48] 2026-03-09 16:17:16,922 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-09 17:17:48] 2026-03-09 16:17:16,922 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-09 17:17:48] 2026-03-09 16:17:16,922 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-09 17:17:48] 2026-03-09 16:17:16,922 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-09 17:17:48] 2026-03-09 16:17:16,922 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-09 17:17:48] 2026-03-09 16:17:16,922 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-09 17:17:48] 2026-03-09 16:17:16,922 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-09 17:17:48] 2026-03-09 16:17:16,922 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-09 17:17:48] 2026-03-09 16:17:16,922 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-09 17:17:48] 2026-03-09 16:17:16,922 | INFO     | job 7040188427 has completed (purged errors)
[2026-03-09 17:17:48] 2026-03-09 16:17:16,922 | INFO     | overall cleanup function is called
[2026-03-09 17:17:48] 2026-03-09 16:17:17,929 | INFO     | --- collectZombieJob: --- 10, [2821103]
[2026-03-09 17:17:48] 2026-03-09 16:17:17,929 | INFO     | zombie collector waiting for pid 2821103
[2026-03-09 17:17:48] 2026-03-09 16:17:17,929 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-09 17:17:48] 2026-03-09 16:17:17,930 | INFO     | collected zombie processes
[2026-03-09 17:17:48] 2026-03-09 16:17:17,930 | INFO     | will attempt to kill all subprocesses of pid=2821103
[2026-03-09 17:17:48] 2026-03-09 16:17:17,985 | INFO     | process IDs to be killed: [2821103] (in reverse order)
[2026-03-09 17:17:48] 2026-03-09 16:17:18,021 | WARNING  | found no corresponding commands to process id(s)
[2026-03-09 17:17:48] 2026-03-09 16:17:18,021 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-09 17:17:48] 2026-03-09 16:17:18,023 | INFO     | did not find any defunct processes belonging to 2821103
[2026-03-09 17:17:48] 2026-03-09 16:17:18,025 | INFO     | did not find any defunct processes belonging to 2821103
[2026-03-09 17:17:48] 2026-03-09 16:17:18,025 | INFO     | ready for new job
[2026-03-09 17:17:48] 2026-03-09 16:17:18,025 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-09 17:17:48] 2026-03-09 16:17:18,026 | INFO     | **************************************
[2026-03-09 17:17:48] 2026-03-09 16:17:18,026 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-09 17:17:48] 2026-03-09 16:17:18,026 | INFO     | **************************************
[2026-03-09 17:17:48] 2026-03-09 16:17:18,026 | INFO     | 
[2026-03-09 17:17:48] 2026-03-09 16:17:18,027 | INFO     | architecture information:
[2026-03-09 17:17:48] 2026-03-09 16:17:18,027 | INFO     | executing command: cat /etc/os-release
[2026-03-09 17:17:48] 2026-03-09 16:17:18,040 | INFO     | cat /etc/os-release:
[2026-03-09 17:17:48] NAME="CentOS Linux"
[2026-03-09 17:17:48] VERSION="7 (Core)"
[2026-03-09 17:17:48] ID="centos"
[2026-03-09 17:17:48] ID_LIKE="rhel fedora"
[2026-03-09 17:17:48] VERSION_ID="7"
[2026-03-09 17:17:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-09 17:17:48] ANSI_COLOR="0;31"
[2026-03-09 17:17:48] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-09 17:17:48] HOME_URL="https://www.centos.org/"
[2026-03-09 17:17:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-09 17:17:48] 
[2026-03-09 17:17:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-09 17:17:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-09 17:17:48] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-09 17:17:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-09 17:17:48] 
[2026-03-09 17:17:48] 2026-03-09 16:17:18,041 | INFO     | **************************************
[2026-03-09 17:17:48] 2026-03-09 16:17:18,544 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-09 17:17:48] 2026-03-09 16:17:18,562 | INFO     | sufficient remaining disk space (227498000384 B)
[2026-03-09 17:17:48] 2026-03-09 16:17:18,562 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-09 17:17:48] 2026-03-09 16:17:18,562 | INFO     | current server update state: UPDATING_FINAL
[2026-03-09 17:17:48] 2026-03-09 16:17:18,563 | INFO     | update_server=False
[2026-03-09 17:17:48] 2026-03-09 16:17:18,563 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-09 17:17:48] 2026-03-09 16:17:18,563 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-09 17:17:48] 2026-03-09 16:17:18,563 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-09 17:17:48] 2026-03-09 16:17:18,563 | INFO     | aborting loop
[2026-03-09 17:17:48] 2026-03-09 16:17:18,700 | INFO     | all job control threads have been joined
[2026-03-09 17:17:48] 2026-03-09 16:17:18,888 | INFO     | all payload control threads have been joined
[2026-03-09 17:17:48] 2026-03-09 16:17:19,282 | INFO     | all data control threads have been joined
[2026-03-09 17:17:48] 2026-03-09 16:17:19,568 | INFO     | [job] retrieve thread has finished
[2026-03-09 17:17:48] 2026-03-09 16:17:19,569 | INFO     | [job] queue monitor thread has finished
[2026-03-09 17:17:48] 2026-03-09 16:17:19,569 | INFO     | [job] job monitor thread has finished
[2026-03-09 17:17:48] 2026-03-09 16:17:19,589 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-09 17:17:48] 2026-03-09 16:17:19,706 | INFO     | [job] control thread has finished
[2026-03-09 17:17:48] 2026-03-09 16:17:19,767 | INFO     | [payload] execute_payloads thread has finished
[2026-03-09 17:17:48] 2026-03-09 16:17:19,890 | INFO     | [payload] control thread has finished
[2026-03-09 17:17:48] 2026-03-09 16:17:20,287 | INFO     | [data] control thread has finished
[2026-03-09 17:17:48] 2026-03-09 16:17:20,350 | INFO     | [payload] failed_post thread has finished
[2026-03-09 17:17:48] 2026-03-09 16:17:20,491 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-09 17:17:48] 2026-03-09 16:17:20,637 | INFO     | [job] validate thread has finished
[2026-03-09 17:17:48] 2026-03-09 16:17:20,754 | INFO     | [job] create_data_payload thread has finished
[2026-03-09 17:17:48] 2026-03-09 16:17:20,788 | INFO     | [payload] validate_post thread has finished
[2026-03-09 17:17:48] 2026-03-09 16:17:20,863 | INFO     | [payload] validate_pre thread has finished
[2026-03-09 17:17:48] 2026-03-09 16:17:20,993 | INFO     | [data] copytool_in thread has finished
[2026-03-09 17:17:48] 2026-03-09 16:17:21,447 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-09 17:17:48] 2026-03-09 16:17:21,595 | INFO     | [data] copytool_out thread has finished
[2026-03-09 17:17:48] 2026-03-09 16:17:25,454 | INFO     | [data] queue_monitor thread has finished
[2026-03-09 17:17:48] 2026-03-09 16:17:37,167 | INFO     | [monitor] cgroup control has ended
[2026-03-09 17:17:48] 2026-03-09 16:17:37,176 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140423659292480)>', '<ExcThread(monitor, started 140422831642368)>']
[2026-03-09 17:17:48] 2026-03-09 16:17:42,201 | INFO     | all workflow threads have been joined
[2026-03-09 17:17:48] 2026-03-09 16:17:42,202 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-09 17:17:48] 2026-03-09 16:17:42,202 | INFO     | traces error code: 0
[2026-03-09 17:17:48] 2026-03-09 16:17:42,202 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-09 17:17:48] 2026-03-09 16:17:48,507 | INFO     | PID=2816594 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-09 17:17:48] 2026-03-09 16:17:48,507 | INFO     | found 0 job(s) in 20 queues
[2026-03-09 17:17:48] 2026-03-09 16:17:48,507 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-09 17:17:48] 2026-03-09 16:17:48,507 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-09 17:17:48] 2026-03-09 16:17:48,507 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-09 17:17:48] 2026-03-09 16:17:48,507 | INFO     | [monitor] control thread has ended
[2026-03-09 17:17:48] 2026-03-09 16:17:48,583 [wrapper] ==== pilot stdout END ====
[2026-03-09 17:17:48] 2026-03-09 16:17:48,587 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-09 17:17:48] 2026-03-09 16:17:48,591 [wrapper] pilotpid: 2816594
[2026-03-09 17:17:48] 2026-03-09 16:17:48,595 [wrapper] Pilot exit status: 0
[2026-03-09 17:17:48] 2026-03-09 16:17:48,606 [wrapper] pandaids: 7040188427
[2026-03-09 17:17:48] 2026-03-09 16:17:48,629 [wrapper] cleanup supervisor_pilot 2827469 2816595
[2026-03-09 17:17:48] 2026-03-09 16:17:48,633 [wrapper] Test setup, not cleaning
[2026-03-09 17:17:48] 2026-03-09 16:17:48,637 [wrapper] apfmon messages muted
[2026-03-09 17:17:48] 2026-03-09 16:17:48,641 [wrapper] ==== wrapper stdout END ====
[2026-03-09 17:17:48] 2026-03-09 16:17:48,645 [wrapper] ==== wrapper stderr END ====
[2026-03-09 17:17:48]  *** Error codes and diagnostics ***
[2026-03-09 17:17:48]     "exeErrorCode": 0,
[2026-03-09 17:17:48]     "exeErrorDiag": "",
[2026-03-09 17:17:48]     "pilotErrorCode": 0,
[2026-03-09 17:17:48]     "pilotErrorDiag": "",
[2026-03-09 17:17:48]  *** Listing of results directory ***
[2026-03-09 17:17:48] total 620652
[2026-03-09 17:17:48] -rw-r--r-- 1 boinc boinc    584627 Mar  8 20:29 pilot3.tar.gz
[2026-03-09 17:17:48] -rwx------ 1 boinc boinc     36322 Mar  8 20:33 runpilot2-wrapper.sh
[2026-03-09 17:17:48] -rw-r--r-- 1 boinc boinc      5111 Mar  8 20:33 queuedata.json
[2026-03-09 17:17:48] -rw-r--r-- 1 boinc boinc       100 Mar  9 16:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-09 17:17:48] -rwxr-xr-x 1 boinc boinc      7986 Mar  9 16:08 run_atlas
[2026-03-09 17:17:48] -rw-r--r-- 1 boinc boinc       105 Mar  9 16:08 job.xml
[2026-03-09 17:17:48] -rw-r--r-- 2 boinc boinc 445769582 Mar  9 16:08 EVNT.46701403._000577.pool.root.1
[2026-03-09 17:17:48] -rw-r--r-- 2 boinc boinc    597950 Mar  9 16:08 input.tar.gz
[2026-03-09 17:17:48] -rw-r--r-- 2 boinc boinc     15845 Mar  9 16:08 start_atlas.sh
[2026-03-09 17:17:48] drwxrwx--x 2 boinc boinc      4096 Mar  9 16:08 shared
[2026-03-09 17:17:48] -rw-r--r-- 1 boinc boinc         0 Mar  9 16:08 boinc_setup_complete
[2026-03-09 17:17:48] -rw-r--r-- 1 boinc boinc      6376 Mar  9 16:08 init_data.xml
[2026-03-09 17:17:48] -rw-r--r-- 1 boinc boinc         0 Mar  9 16:08 boinc_lockfile
[2026-03-09 17:17:48] -rw-r--r-- 1 boinc boinc      2564 Mar  9 16:08 pandaJob.out
[2026-03-09 17:17:48] -rw------- 1 boinc boinc    990760 Mar  9 16:08 agis_schedconf.cvmfs.json
[2026-03-09 17:17:48] -rw------- 1 boinc boinc   1511578 Mar  9 16:08 agis_ddmendpoints.agis.ALL.json
[2026-03-09 17:17:48] -rw------- 1 boinc boinc       427 Mar  9 16:08 workernode_map.json
[2026-03-09 17:17:48] drwx------ 5 boinc boinc      4096 Mar  9 16:08 pilot3
[2026-03-09 17:17:48] -rw------- 1 boinc boinc        95 Mar  9 17:16 pilot_heartbeat.json
[2026-03-09 17:17:48] -rw------- 1 boinc boinc 184145374 Mar  9 17:16 HITS.48955006._028828.pool.root.1
[2026-03-09 17:17:48] -rw-r--r-- 1 boinc boinc       530 Mar  9 17:16 boinc_task_state.xml
[2026-03-09 17:17:48] -rw------- 1 boinc boinc      1021 Mar  9 17:17 memory_monitor_summary.json
[2026-03-09 17:17:48] -rw------- 1 boinc boinc    251423 Mar  9 17:17 log.48955006._028828.job.log.tgz.1
[2026-03-09 17:17:48] -rw------- 1 boinc boinc      6310 Mar  9 17:17 heartbeat.json
[2026-03-09 17:17:48] -rw-r--r-- 1 boinc boinc      8192 Mar  9 17:17 boinc_mmap_file
[2026-03-09 17:17:48] -rw-r--r-- 1 boinc boinc        27 Mar  9 17:17 wrapper_checkpoint.txt
[2026-03-09 17:17:48] -rw------- 1 boinc boinc       747 Mar  9 17:17 pilotlog.txt
[2026-03-09 17:17:48] -rw------- 1 boinc boinc    613475 Mar  9 17:17 log.48955006._028828.job.log.1
[2026-03-09 17:17:48] -rw------- 1 boinc boinc       357 Mar  9 17:17 output.list
[2026-03-09 17:17:48] -rw-r--r-- 1 boinc boinc       620 Mar  9 17:17 runtime_log
[2026-03-09 17:17:48] -rw------- 1 boinc boinc    880640 Mar  9 17:17 result.tar.gz
[2026-03-09 17:17:48] -rw-r--r-- 1 boinc boinc      8896 Mar  9 17:17 runtime_log.err
[2026-03-09 17:17:48] -rw------- 1 boinc boinc       657 Mar  9 17:17 hbaKDmf3YJ9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm06ZLDmCm4BLo.diag
[2026-03-09 17:17:48] -rw-r--r-- 1 boinc boinc     11825 Mar  9 17:17 stderr.txt
[2026-03-09 17:17:48] HITS file was successfully produced:
[2026-03-09 17:17:48] -rw------- 1 boinc boinc 184145374 Mar  9 17:16 shared/HITS.pool.root.1
[2026-03-09 17:17:48]  *** Contents of shared directory: ***
[2026-03-09 17:17:48] total 616624
[2026-03-09 17:17:48] -rw-r--r-- 2 boinc boinc 445769582 Mar  9 16:08 ATLAS.root_0
[2026-03-09 17:17:48] -rw-r--r-- 2 boinc boinc    597950 Mar  9 16:08 input.tar.gz
[2026-03-09 17:17:48] -rw-r--r-- 2 boinc boinc     15845 Mar  9 16:08 start_atlas.sh
[2026-03-09 17:17:48] -rw------- 1 boinc boinc 184145374 Mar  9 17:16 HITS.pool.root.1
[2026-03-09 17:17:48] -rw------- 1 boinc boinc    880640 Mar  9 17:17 result.tar.gz
17:17:49 (2812475): run_atlas exited; CPU time 15353.661205
17:17:49 (2812475): called boinc_finish(0)

</stderr_txt>
]]>

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