Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:37:20 (2843545): wrapper (7.7.26015): starting
18:37:20 (2843545): wrapper: running run_atlas (--nthreads 4)
[2026-03-09 18:37:20] Arguments: --nthreads 4
[2026-03-09 18:37:20] Threads: 4
[2026-03-09 18:37:20] Checking for CVMFS
[2026-03-09 18:37:20] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-09 18:37:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-09 18:37:20] Running cvmfs_config stat atlas.cern.ch
[2026-03-09 18:37:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-09 18:37:20] 2.9.2.0 3074 15851 102916 157085 3 50 28797049 36864000 0 130560 0 7162081 99.985 590324 13291 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-09 18:37:20] CVMFS is ok
[2026-03-09 18:37:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-09 18:37:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-09 18:37:20] Further information can be found at the LHC@home message board.
[2026-03-09 18:37:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-09 18:37:20] Checking for apptainer binary...
[2026-03-09 18:37:20] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-09 18:37:20] Running /usr/bin/apptainer --version
[2026-03-09 18:37:20] apptainer version 1.4.1-1.1
[2026-03-09 18:37:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-09 18:37:20] thA314
[2026-03-09 18:37:20] apptainer works
[2026-03-09 18:37:20] Set ATHENA_PROC_NUMBER=4
[2026-03-09 18:37:20] Set ATHENA_CORE_NUMBER=4
[2026-03-09 18:37:20] Starting ATLAS job with PandaID=7040267865
[2026-03-09 18:37:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-09 19:45:58]  *** The last 200 lines of the pilot log: ***
[2026-03-09 19:45:58] 2026-03-09 18:45:26,765 | INFO     | did not find any defunct processes belonging to 2852179
[2026-03-09 19:45:58] 2026-03-09 18:45:26,765 | INFO     | ready for new job
[2026-03-09 19:45:58] 2026-03-09 18:45:26,765 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-09 19:45:58] 2026-03-09 18:45:26,765 | INFO     | **************************************
[2026-03-09 19:45:58] 2026-03-09 18:45:26,765 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-09 19:45:58] 2026-03-09 18:45:26,766 | INFO     | **************************************
[2026-03-09 19:45:58] 2026-03-09 18:45:26,766 | INFO     | 
[2026-03-09 19:45:58] 2026-03-09 18:45:26,766 | INFO     | architecture information:
[2026-03-09 19:45:58] 2026-03-09 18:45:26,766 | INFO     | executing command: cat /etc/os-release
[2026-03-09 19:45:58] 2026-03-09 18:45:26,781 | INFO     | cat /etc/os-release:
[2026-03-09 19:45:58] NAME="CentOS Linux"
[2026-03-09 19:45:58] VERSION="7 (Core)"
[2026-03-09 19:45:58] ID="centos"
[2026-03-09 19:45:58] ID_LIKE="rhel fedora"
[2026-03-09 19:45:58] VERSION_ID="7"
[2026-03-09 19:45:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-09 19:45:58] ANSI_COLOR="0;31"
[2026-03-09 19:45:58] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-09 19:45:58] HOME_URL="https://www.centos.org/"
[2026-03-09 19:45:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-09 19:45:58] 
[2026-03-09 19:45:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-09 19:45:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-09 19:45:58] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-09 19:45:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-09 19:45:58] 
[2026-03-09 19:45:58] 2026-03-09 18:45:26,781 | INFO     | **************************************
[2026-03-09 19:45:58] 2026-03-09 18:45:27,284 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-09 19:45:58] 2026-03-09 18:45:27,301 | INFO     | sufficient remaining disk space (227515826176 B)
[2026-03-09 19:45:58] 2026-03-09 18:45:27,301 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-09 19:45:58] 2026-03-09 18:45:27,301 | INFO     | current server update state: UPDATING_FINAL
[2026-03-09 19:45:58] 2026-03-09 18:45:27,301 | INFO     | update_server=False
[2026-03-09 19:45:58] 2026-03-09 18:45:27,301 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-09 19:45:58] 2026-03-09 18:45:27,301 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-09 19:45:58] 2026-03-09 18:45:27,302 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-09 19:45:58] 2026-03-09 18:45:27,302 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-09 19:45:58] 2026-03-09 18:45:27,392 | INFO     | all job control threads have been joined
[2026-03-09 19:45:58] 2026-03-09 18:45:27,632 | INFO     | all payload control threads have been joined
[2026-03-09 19:45:58] 2026-03-09 18:45:28,255 | INFO     | all data control threads have been joined
[2026-03-09 19:45:58] 2026-03-09 18:45:28,307 | INFO     | [job] retrieve thread has finished
[2026-03-09 19:45:58] 2026-03-09 18:45:28,307 | INFO     | [job] queue monitor thread has finished
[2026-03-09 19:45:58] 2026-03-09 18:45:28,398 | INFO     | [job] control thread has finished
[2026-03-09 19:45:58] 2026-03-09 18:45:28,552 | INFO     | [payload] failed_post thread has finished
[2026-03-09 19:45:58] 2026-03-09 18:45:28,638 | INFO     | [payload] control thread has finished
[2026-03-09 19:45:58] 2026-03-09 18:45:29,151 | INFO     | [job] validate thread has finished
[2026-03-09 19:45:58] 2026-03-09 18:45:29,261 | INFO     | [data] control thread has finished
[2026-03-09 19:45:58] 2026-03-09 18:45:29,307 | INFO     | [job] create_data_payload thread has finished
[2026-03-09 19:45:58] 2026-03-09 18:45:29,307 | INFO     | [data] copytool_out thread has finished
[2026-03-09 19:45:58] 2026-03-09 18:45:29,318 | INFO     | [payload] execute_payloads thread has finished
[2026-03-09 19:45:58] 2026-03-09 18:45:29,360 | INFO     | [payload] validate_pre thread has finished
[2026-03-09 19:45:58] 2026-03-09 18:45:29,369 | WARNING  | process 2852179 can no longer be monitored (due to stat problems) - aborting
[2026-03-09 19:45:58] 2026-03-09 18:45:29,410 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 19:45:58] 2026-03-09 18:45:29,460 | INFO     | number of running child processes to parent process 2852179: 1
[2026-03-09 19:45:58] 2026-03-09 18:45:29,460 | INFO     | maximum number of monitored processes: 6
[2026-03-09 19:45:58] 2026-03-09 18:45:29,460 | INFO     | aborting job monitoring since job object (job id=7040267865) has expired
[2026-03-09 19:45:58] 2026-03-09 18:45:29,461 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-09 19:45:58] 2026-03-09 18:45:29,461 | INFO     | will abort loop
[2026-03-09 19:45:58] 2026-03-09 18:45:29,530 | INFO     | [data] copytool_in thread has finished
[2026-03-09 19:45:58] 2026-03-09 18:45:29,657 | INFO     | [payload] validate_post thread has finished
[2026-03-09 19:45:58] 2026-03-09 18:45:30,466 | INFO     | [job] job monitor thread has finished
[2026-03-09 19:45:58] 2026-03-09 18:45:31,309 | INFO     | [data] queue_monitor thread has finished
[2026-03-09 19:45:58] 2026-03-09 18:45:36,872 | INFO     | [monitor] cgroup control has ended
[2026-03-09 19:45:58] 2026-03-09 18:45:38,255 | INFO     | job.realtimelogging is not enabled
[2026-03-09 19:45:58] 2026-03-09 18:45:39,261 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-09 19:45:58] 2026-03-09 18:45:39,653 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140295062075200)>', '<ExcThread(monitor, started 140294293022464)>']
[2026-03-09 19:45:58] 2026-03-09 18:45:44,656 | INFO     | all workflow threads have been joined
[2026-03-09 19:45:58] 2026-03-09 18:45:44,657 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-09 19:45:58] 2026-03-09 18:45:44,657 | INFO     | traces error code: 0
[2026-03-09 19:45:58] 2026-03-09 18:45:44,657 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-09 19:45:58] 2026-03-09 18:45:58,237 | INFO     | PID=2847658 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-09 19:45:58] 2026-03-09 18:45:58,238 | INFO     | found 0 job(s) in 20 queues
[2026-03-09 19:45:58] 2026-03-09 18:45:58,238 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-09 19:45:58] 2026-03-09 18:45:58,238 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-09 19:45:58] 2026-03-09 18:45:58,238 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-09 19:45:58] 2026-03-09 18:45:58,238 | INFO     | [monitor] control thread has ended
[2026-03-09 19:45:58] 2026-03-09 18:45:58,315 [wrapper] ==== pilot stdout END ====
[2026-03-09 19:45:58] 2026-03-09 18:45:58,319 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-09 19:45:58] 2026-03-09 18:45:58,323 [wrapper] pilotpid: 2847658
[2026-03-09 19:45:58] 2026-03-09 18:45:58,327 [wrapper] Pilot exit status: 0
[2026-03-09 19:45:58] 2026-03-09 18:45:58,339 [wrapper] pandaids: 7040267865
[2026-03-09 19:45:58] 2026-03-09 18:45:58,363 [wrapper] cleanup supervisor_pilot 2858366 2847659
[2026-03-09 19:45:58] 2026-03-09 18:45:58,367 [wrapper] Test setup, not cleaning
[2026-03-09 19:45:58] 2026-03-09 18:45:58,371 [wrapper] apfmon messages muted
[2026-03-09 19:45:58] 2026-03-09 18:45:58,375 [wrapper] ==== wrapper stdout END ====
[2026-03-09 19:45:58] 2026-03-09 18:45:58,379 [wrapper] ==== wrapper stderr END ====
[2026-03-09 19:45:58]  *** Error codes and diagnostics ***
[2026-03-09 19:45:58]     "exeErrorCode": 0,
[2026-03-09 19:45:58]     "exeErrorDiag": "",
[2026-03-09 19:45:58]     "pilotErrorCode": 0,
[2026-03-09 19:45:58]     "pilotErrorDiag": "",
[2026-03-09 19:45:58]  *** Listing of results directory ***
[2026-03-09 19:45:58] total 623736
[2026-03-09 19:45:58] -rw-r--r-- 1 boinc boinc    584627 Mar  8 22:54 pilot3.tar.gz
[2026-03-09 19:45:58] -rwx------ 1 boinc boinc     36322 Mar  8 23:44 runpilot2-wrapper.sh
[2026-03-09 19:45:58] -rw-r--r-- 1 boinc boinc      5111 Mar  8 23:44 queuedata.json
[2026-03-09 19:45:58] -rw-r--r-- 1 boinc boinc       100 Mar  9 18:37 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-09 19:45:58] -rwxr-xr-x 1 boinc boinc      7986 Mar  9 18:37 run_atlas
[2026-03-09 19:45:58] -rw-r--r-- 1 boinc boinc       105 Mar  9 18:37 job.xml
[2026-03-09 19:45:58] -rw-r--r-- 2 boinc boinc 444395942 Mar  9 18:37 EVNT.46701403._000603.pool.root.1
[2026-03-09 19:45:58] -rw-r--r-- 2 boinc boinc    597962 Mar  9 18:37 input.tar.gz
[2026-03-09 19:45:58] -rw-r--r-- 2 boinc boinc     15845 Mar  9 18:37 start_atlas.sh
[2026-03-09 19:45:58] drwxrwx--x 2 boinc boinc      4096 Mar  9 18:37 shared
[2026-03-09 19:45:58] -rw-r--r-- 1 boinc boinc         0 Mar  9 18:37 boinc_setup_complete
[2026-03-09 19:45:58] -rw-r--r-- 1 boinc boinc      6376 Mar  9 18:37 init_data.xml
[2026-03-09 19:45:58] -rw-r--r-- 1 boinc boinc         0 Mar  9 18:37 boinc_lockfile
[2026-03-09 19:45:58] -rw-r--r-- 1 boinc boinc      2564 Mar  9 18:37 pandaJob.out
[2026-03-09 19:45:58] -rw------- 1 boinc boinc   1002716 Mar  9 18:37 agis_schedconf.cvmfs.json
[2026-03-09 19:45:58] -rw------- 1 boinc boinc   1511578 Mar  9 18:37 agis_ddmendpoints.agis.ALL.json
[2026-03-09 19:45:58] -rw------- 1 boinc boinc       419 Mar  9 18:37 workernode_map.json
[2026-03-09 19:45:58] drwx------ 5 boinc boinc      4096 Mar  9 18:37 pilot3
[2026-03-09 19:45:58] -rw------- 1 boinc boinc 188682032 Mar  9 19:45 HITS.48955006._030125.pool.root.1
[2026-03-09 19:45:58] -rw-r--r-- 1 boinc boinc       530 Mar  9 19:45 boinc_task_state.xml
[2026-03-09 19:45:58] -rw------- 1 boinc boinc      1021 Mar  9 19:45 memory_monitor_summary.json
[2026-03-09 19:45:58] -rw------- 1 boinc boinc    247907 Mar  9 19:45 log.48955006._030125.job.log.tgz.1
[2026-03-09 19:45:58] -rw------- 1 boinc boinc      6310 Mar  9 19:45 heartbeat.json
[2026-03-09 19:45:58] -rw-r--r-- 1 boinc boinc        27 Mar  9 19:45 wrapper_checkpoint.txt
[2026-03-09 19:45:58] -rw-r--r-- 1 boinc boinc      8192 Mar  9 19:45 boinc_mmap_file
[2026-03-09 19:45:58] -rw------- 1 boinc boinc       747 Mar  9 19:45 pilotlog.txt
[2026-03-09 19:45:58] -rw------- 1 boinc boinc        95 Mar  9 19:45 pilot_heartbeat.json
[2026-03-09 19:45:58] -rw------- 1 boinc boinc    606513 Mar  9 19:45 log.48955006._030125.job.log.1
[2026-03-09 19:45:58] -rw------- 1 boinc boinc       357 Mar  9 19:45 output.list
[2026-03-09 19:45:58] -rw-r--r-- 1 boinc boinc       620 Mar  9 19:45 runtime_log
[2026-03-09 19:45:58] -rw------- 1 boinc boinc    870400 Mar  9 19:45 result.tar.gz
[2026-03-09 19:45:58] -rw------- 1 boinc boinc       657 Mar  9 19:45 sxINDmC2bJ9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmiYaLDmXZfYLm.diag
[2026-03-09 19:45:58] -rw-r--r-- 1 boinc boinc      8896 Mar  9 19:45 runtime_log.err
[2026-03-09 19:45:58] -rw-r--r-- 1 boinc boinc     10365 Mar  9 19:45 stderr.txt
[2026-03-09 19:45:58] HITS file was successfully produced:
[2026-03-09 19:45:58] -rw------- 1 boinc boinc 188682032 Mar  9 19:45 shared/HITS.pool.root.1
[2026-03-09 19:45:58]  *** Contents of shared directory: ***
[2026-03-09 19:45:58] total 619704
[2026-03-09 19:45:58] -rw-r--r-- 2 boinc boinc 444395942 Mar  9 18:37 ATLAS.root_0
[2026-03-09 19:45:58] -rw-r--r-- 2 boinc boinc    597962 Mar  9 18:37 input.tar.gz
[2026-03-09 19:45:58] -rw-r--r-- 2 boinc boinc     15845 Mar  9 18:37 start_atlas.sh
[2026-03-09 19:45:58] -rw------- 1 boinc boinc 188682032 Mar  9 19:45 HITS.pool.root.1
[2026-03-09 19:45:58] -rw------- 1 boinc boinc    870400 Mar  9 19:45 result.tar.gz
19:45:59 (2843545): run_atlas exited; CPU time 15296.694895
19:45:59 (2843545): called boinc_finish(0)

</stderr_txt>
]]>

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