Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:40:54 (1164064): wrapper (7.7.26015): starting
20:40:54 (1164064): wrapper: running run_atlas (--nthreads 4)
[2026-03-09 20:40:54] Arguments: --nthreads 4
[2026-03-09 20:40:54] Threads: 4
[2026-03-09 20:40:54] Checking for CVMFS
[2026-03-09 20:40:54] No cvmfs_config command found, will try listing directly
[2026-03-09 20:40:54] CVMFS is ok
[2026-03-09 20:40:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-09 20:40:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-09 20:40:54] Further information can be found at the LHC@home message board.
[2026-03-09 20:40:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-09 20:40:54] Checking for apptainer binary...
[2026-03-09 20:40:54] which: no apptainer in ((null))
[2026-03-09 20:40:54] apptainer is not installed, using version from CVMFS
[2026-03-09 20:40:54] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-09 20:40:55] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot248/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut19.grid.cesnet.cz
[2026-03-09 20:40:55] apptainer works
[2026-03-09 20:40:55] Set ATHENA_PROC_NUMBER=4
[2026-03-09 20:40:55] Set ATHENA_CORE_NUMBER=4
[2026-03-09 20:40:55] Starting ATLAS job with PandaID=7046498522
[2026-03-09 20:40:55] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot248/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-09 22:26:23]  *** The last 200 lines of the pilot log: ***
[2026-03-09 22:26:23] 2026-03-09 21:25:20,652 | INFO     | using path: /var/lib/boinc/var/slot248/slots/0/PanDA_Pilot-7046498522/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 22:26:23] 2026-03-09 21:25:20,652 | INFO     | extracted standard info from prmon json
[2026-03-09 22:26:23] 2026-03-09 21:25:20,652 | INFO     | extracted standard memory fields from prmon json
[2026-03-09 22:26:23] 2026-03-09 21:25:20,652 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-09 22:26:23] 2026-03-09 21:25:20,653 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-09 22:26:23] 2026-03-09 21:25:20,653 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-09 22:26:23] 2026-03-09 21:25:20,654 | INFO     | fitting pss+swap vs Time
[2026-03-09 22:26:23] 2026-03-09 21:25:20,654 | INFO     | sum of square deviations: 338804492.0
[2026-03-09 22:26:23] 2026-03-09 21:25:20,654 | INFO     | sum of deviations: 4144641706.000002
[2026-03-09 22:26:23] 2026-03-09 21:25:20,654 | INFO     | mean x: 1773088397.0
[2026-03-09 22:26:23] 2026-03-09 21:25:20,655 | INFO     | mean y: 2278048.067961165
[2026-03-09 22:26:23] 2026-03-09 21:25:20,655 | INFO     | intersect: -21688154907.08568
[2026-03-09 22:26:23] 2026-03-09 21:25:20,655 | INFO     | chi2: 1.928618464374758
[2026-03-09 22:26:23] 2026-03-09 21:25:20,655 | INFO     | sum of square deviations: 291817564.5
[2026-03-09 22:26:23] 2026-03-09 21:25:20,655 | INFO     | sum of deviations: 10155004920.5
[2026-03-09 22:26:23] 2026-03-09 21:25:20,655 | INFO     | mean x: 1773088244.5
[2026-03-09 22:26:23] 2026-03-09 21:25:20,655 | INFO     | mean y: 2296733.275510204
[2026-03-09 22:26:23] 2026-03-09 21:25:20,655 | INFO     | intersect: -61699677506.10653
[2026-03-09 22:26:23] 2026-03-09 21:25:20,655 | INFO     | chi2: 1.115443799818298
[2026-03-09 22:26:23] 2026-03-09 21:25:20,655 | INFO     | current chi2=1.115443799818298 (change=42.16358391135099 %)
[2026-03-09 22:26:23] 2026-03-09 21:25:20,655 | INFO     | sum of square deviations: 249388862.0
[2026-03-09 22:26:23] 2026-03-09 21:25:20,655 | INFO     | sum of deviations: 9591807871.999996
[2026-03-09 22:26:23] 2026-03-09 21:25:20,656 | INFO     | mean x: 1773088092.0
[2026-03-09 22:26:23] 2026-03-09 21:25:20,656 | INFO     | mean y: 2294706.9677419355
[2026-03-09 22:26:23] 2026-03-09 21:25:20,656 | INFO     | intersect: -68192893250.52433
[2026-03-09 22:26:23] 2026-03-09 21:25:20,656 | INFO     | chi2: 1.1174210596830354
[2026-03-09 22:26:23] 2026-03-09 21:25:20,656 | INFO     | current chi2=1.1174210596830354 (change=-0.17726216821138732 %)
[2026-03-09 22:26:23] 2026-03-09 21:25:20,656 | INFO     | right removable region: 92
[2026-03-09 22:26:23] 2026-03-09 21:25:20,656 | INFO     | sum of square deviations: 291817564.5
[2026-03-09 22:26:23] 2026-03-09 21:25:20,656 | INFO     | sum of deviations: -5497551556.0
[2026-03-09 22:26:23] 2026-03-09 21:25:20,656 | INFO     | mean x: 1773088549.5
[2026-03-09 22:26:23] 2026-03-09 21:25:20,656 | INFO     | mean y: 2308348.224489796
[2026-03-09 22:26:23] 2026-03-09 21:25:20,656 | INFO     | intersect: 33405526317.40711
[2026-03-09 22:26:23] 2026-03-09 21:25:20,656 | INFO     | chi2: 0.846940018329884
[2026-03-09 22:26:23] 2026-03-09 21:25:20,656 | INFO     | current chi2=0.846940018329884 (change=56.0856626660756 %)
[2026-03-09 22:26:23] 2026-03-09 21:25:20,656 | INFO     | sum of square deviations: 249388862.0
[2026-03-09 22:26:23] 2026-03-09 21:25:20,657 | INFO     | sum of deviations: -5483719074.0
[2026-03-09 22:26:23] 2026-03-09 21:25:20,657 | INFO     | mean x: 1773088702.0
[2026-03-09 22:26:23] 2026-03-09 21:25:20,657 | INFO     | mean y: 2308289.8279569894
[2026-03-09 22:26:23] 2026-03-09 21:25:20,657 | INFO     | intersect: 38990097307.65226
[2026-03-09 22:26:23] 2026-03-09 21:25:20,657 | INFO     | chi2: 0.8480188597431917
[2026-03-09 22:26:23] 2026-03-09 21:25:20,657 | INFO     | current chi2=0.8480188597431917 (change=-0.1273810883839366 %)
[2026-03-09 22:26:23] 2026-03-09 21:25:20,657 | INFO     | left removable region: 20
[2026-03-09 22:26:23] 2026-03-09 21:25:20,657 | INFO     | sum of square deviations: 115715658.0
[2026-03-09 22:26:23] 2026-03-09 21:25:20,657 | INFO     | sum of deviations: 215925908.99999997
[2026-03-09 22:26:23] 2026-03-09 21:25:20,657 | INFO     | mean x: 1773088671.5
[2026-03-09 22:26:23] 2026-03-09 21:25:20,657 | INFO     | mean y: 2331201.5555555555
[2026-03-09 22:26:23] 2026-03-09 21:25:20,657 | INFO     | intersect: -3306259785.597107
[2026-03-09 22:26:23] 2026-03-09 21:25:20,657 | INFO     | chi2: 0.00014063361596123187
[2026-03-09 22:26:23] 2026-03-09 21:25:20,657 | INFO     | current memory leak: 1.87 B/s (using 72 data points, chi2=0.00)
[2026-03-09 22:26:23] 2026-03-09 21:25:20,657 | INFO     | could have reported an average CPU frequency of 3556 MHz (7 samples)
[2026-03-09 22:26:23] 2026-03-09 21:25:20,658 | INFO     | ..............................
[2026-03-09 22:26:23] 2026-03-09 21:25:20,658 | INFO     | . Timing measurements:
[2026-03-09 22:26:23] 2026-03-09 21:25:20,658 | INFO     | . get job = 0 s
[2026-03-09 22:26:23] 2026-03-09 21:25:20,658 | INFO     | . initial setup = 4 s
[2026-03-09 22:26:23] 2026-03-09 21:25:20,658 | INFO     | . payload setup = 4 s
[2026-03-09 22:26:23] 2026-03-09 21:25:20,658 | INFO     | . stage-in = 0 s
[2026-03-09 22:26:23] 2026-03-09 21:25:20,658 | INFO     | . payload execution = 6232 s
[2026-03-09 22:26:23] 2026-03-09 21:25:20,658 | INFO     | . stage-out = 0 s
[2026-03-09 22:26:23] 2026-03-09 21:25:20,658 | INFO     | . log creation = 0 s
[2026-03-09 22:26:23] 2026-03-09 21:25:20,658 | INFO     | ..............................
[2026-03-09 22:26:23] 2026-03-09 21:25:20,960 | INFO     | 
[2026-03-09 22:26:23] 2026-03-09 21:25:20,960 | INFO     | job summary report
[2026-03-09 22:26:23] 2026-03-09 21:25:20,960 | INFO     | --------------------------------------------------
[2026-03-09 22:26:23] 2026-03-09 21:25:20,960 | INFO     | PanDA job id: 7046498522
[2026-03-09 22:26:23] 2026-03-09 21:25:20,960 | INFO     | task id: 48966988
[2026-03-09 22:26:23] 2026-03-09 21:25:20,960 | INFO     | errors: (none)
[2026-03-09 22:26:23] 2026-03-09 21:25:20,960 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-09 22:26:23] 2026-03-09 21:25:20,960 | INFO     | pilot state: finished 
[2026-03-09 22:26:23] 2026-03-09 21:25:20,960 | INFO     | transexitcode: 0
[2026-03-09 22:26:23] 2026-03-09 21:25:20,960 | INFO     | exeerrorcode: 0
[2026-03-09 22:26:23] 2026-03-09 21:25:20,960 | INFO     | exeerrordiag: 
[2026-03-09 22:26:23] 2026-03-09 21:25:20,960 | INFO     | exitcode: 0
[2026-03-09 22:26:23] 2026-03-09 21:25:20,960 | INFO     | exitmsg: OK
[2026-03-09 22:26:23] 2026-03-09 21:25:20,960 | INFO     | cpuconsumptiontime: 23919 s
[2026-03-09 22:26:23] 2026-03-09 21:25:20,960 | INFO     | nevents: 400
[2026-03-09 22:26:23] 2026-03-09 21:25:20,960 | INFO     | neventsw: 0
[2026-03-09 22:26:23] 2026-03-09 21:25:20,961 | INFO     | pid: 1192046
[2026-03-09 22:26:23] 2026-03-09 21:25:20,961 | INFO     | pgrp: 1192046
[2026-03-09 22:26:23] 2026-03-09 21:25:20,961 | INFO     | corecount: 4
[2026-03-09 22:26:23] 2026-03-09 21:25:20,961 | INFO     | event service: False
[2026-03-09 22:26:23] 2026-03-09 21:25:20,961 | INFO     | sizes: {0: 2280283, 11: 2280283, 6240: 2307185, 6241: 2316207, 6242: 2316457}
[2026-03-09 22:26:23] 2026-03-09 21:25:20,961 | INFO     | --------------------------------------------------
[2026-03-09 22:26:23] 2026-03-09 21:25:20,961 | INFO     | 
[2026-03-09 22:26:23] 2026-03-09 21:25:20,961 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot248/slots/0
[2026-03-09 22:26:23] 2026-03-09 21:25:20,984 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-09 22:26:23] 2026-03-09 21:25:20,984 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-09 22:26:23] 2026-03-09 21:25:20,984 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-09 22:26:23] 2026-03-09 21:25:20,984 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-09 22:26:23] 2026-03-09 21:25:20,984 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-09 22:26:23] 2026-03-09 21:25:20,984 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-09 22:26:23] 2026-03-09 21:25:20,984 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-09 22:26:23] 2026-03-09 21:25:20,984 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-09 22:26:23] 2026-03-09 21:25:20,985 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-09 22:26:23] 2026-03-09 21:25:20,985 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-09 22:26:23] 2026-03-09 21:25:20,985 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-09 22:26:23] 2026-03-09 21:25:20,985 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-09 22:26:23] 2026-03-09 21:25:20,985 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-09 22:26:23] 2026-03-09 21:25:20,985 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-09 22:26:23] 2026-03-09 21:25:20,985 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-09 22:26:23] 2026-03-09 21:25:20,985 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-09 22:26:23] 2026-03-09 21:25:20,985 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-09 22:26:23] 2026-03-09 21:25:20,985 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-09 22:26:23] 2026-03-09 21:25:20,985 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-09 22:26:23] 2026-03-09 21:25:20,985 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-09 22:26:23] 2026-03-09 21:25:20,985 | INFO     | job 7046498522 has completed (purged errors)
[2026-03-09 22:26:23] 2026-03-09 21:25:20,985 | INFO     | overall cleanup function is called
[2026-03-09 22:26:23] 2026-03-09 21:25:21,993 | INFO     | --- collectZombieJob: --- 10, [1192046]
[2026-03-09 22:26:23] 2026-03-09 21:25:21,993 | INFO     | zombie collector waiting for pid 1192046
[2026-03-09 22:26:23] 2026-03-09 21:25:21,993 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-09 22:26:23] 2026-03-09 21:25:21,993 | INFO     | collected zombie processes
[2026-03-09 22:26:23] 2026-03-09 21:25:21,993 | INFO     | will attempt to kill all subprocesses of pid=1192046
[2026-03-09 22:26:23] 2026-03-09 21:25:22,426 | INFO     | process IDs to be killed: [1192046] (in reverse order)
[2026-03-09 22:26:23] 2026-03-09 21:25:22,662 | WARNING  | found no corresponding commands to process id(s)
[2026-03-09 22:26:23] 2026-03-09 21:25:22,662 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-09 22:26:23] 2026-03-09 21:25:22,689 | INFO     | did not find any defunct processes belonging to 1192046
[2026-03-09 22:26:23] 2026-03-09 21:25:22,715 | INFO     | did not find any defunct processes belonging to 1192046
[2026-03-09 22:26:23] 2026-03-09 21:25:22,716 | INFO     | ready for new job
[2026-03-09 22:26:23] 2026-03-09 21:25:22,716 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-09 22:26:23] 2026-03-09 21:25:22,717 | INFO     | **************************************
[2026-03-09 22:26:23] 2026-03-09 21:25:22,717 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-09 22:26:23] 2026-03-09 21:25:22,717 | INFO     | **************************************
[2026-03-09 22:26:23] 2026-03-09 21:25:22,717 | INFO     | 
[2026-03-09 22:26:23] 2026-03-09 21:25:22,724 | INFO     | architecture information:
[2026-03-09 22:26:23] 2026-03-09 21:25:22,724 | INFO     | executing command: cat /etc/os-release
[2026-03-09 22:26:23] 2026-03-09 21:25:22,739 | INFO     | cat /etc/os-release:
[2026-03-09 22:26:23] NAME="CentOS Linux"
[2026-03-09 22:26:23] VERSION="7 (Core)"
[2026-03-09 22:26:23] ID="centos"
[2026-03-09 22:26:23] ID_LIKE="rhel fedora"
[2026-03-09 22:26:23] VERSION_ID="7"
[2026-03-09 22:26:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-09 22:26:23] ANSI_COLOR="0;31"
[2026-03-09 22:26:23] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-09 22:26:23] HOME_URL="https://www.centos.org/"
[2026-03-09 22:26:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-09 22:26:23] 
[2026-03-09 22:26:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-09 22:26:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-09 22:26:23] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-09 22:26:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-09 22:26:23] 
[2026-03-09 22:26:23] 2026-03-09 21:25:22,739 | INFO     | **************************************
[2026-03-09 22:26:23] 2026-03-09 21:25:23,242 | INFO     | executing command: df -mP /var/lib/boinc/var/slot248/slots/0
[2026-03-09 22:26:23] 2026-03-09 21:25:23,257 | INFO     | sufficient remaining disk space (24097325056 B)
[2026-03-09 22:26:23] 2026-03-09 21:25:23,257 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-09 22:26:23] 2026-03-09 21:25:23,257 | INFO     | current server update state: UPDATING_FINAL
[2026-03-09 22:26:23] 2026-03-09 21:25:23,257 | INFO     | update_server=False
[2026-03-09 22:26:23] 2026-03-09 21:25:23,257 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-09 22:26:23] 2026-03-09 21:25:23,358 | INFO     | all job control threads have been joined
[2026-03-09 22:26:23] 2026-03-09 21:25:23,532 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-09 22:26:23] 2026-03-09 21:25:23,532 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-09 22:26:23] 2026-03-09 21:25:23,534 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-09 22:26:23] 2026-03-09 21:25:23,534 | INFO     | will abort loop
[2026-03-09 22:26:23] 2026-03-09 21:25:23,848 | INFO     | all payload control threads have been joined
[2026-03-09 22:26:23] 2026-03-09 21:25:23,999 | INFO     | all data control threads have been joined
[2026-03-09 22:26:23] 2026-03-09 21:25:24,263 | INFO     | [job] retrieve thread has finished
[2026-03-09 22:26:23] 2026-03-09 21:25:24,363 | INFO     | [job] control thread has finished
[2026-03-09 22:26:23] 2026-03-09 21:25:24,466 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-09 22:26:23] 2026-03-09 21:25:24,539 | INFO     | [job] job monitor thread has finished
[2026-03-09 22:26:23] 2026-03-09 21:25:24,745 | INFO     | job.realtimelogging is not enabled
[2026-03-09 22:26:23] 2026-03-09 21:25:24,805 | INFO     | [payload] failed_post thread has finished
[2026-03-09 22:26:23] 2026-03-09 21:25:24,853 | INFO     | [payload] control thread has finished
[2026-03-09 22:26:23] 2026-03-09 21:25:25,004 | INFO     | [data] control thread has finished
[2026-03-09 22:26:23] 2026-03-09 21:25:25,093 | INFO     | [job] create_data_payload thread has finished
[2026-03-09 22:26:23] 2026-03-09 21:25:25,129 | INFO     | [job] validate thread has finished
[2026-03-09 22:26:23] 2026-03-09 21:25:25,207 | INFO     | [payload] validate_pre thread has finished
[2026-03-09 22:26:23] 2026-03-09 21:25:25,267 | INFO     | [payload] execute_payloads thread has finished
[2026-03-09 22:26:23] 2026-03-09 21:25:25,387 | INFO     | [data] copytool_in thread has finished
[2026-03-09 22:26:23] 2026-03-09 21:25:25,716 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-09 22:26:23] 2026-03-09 21:25:25,743 | INFO     | [payload] validate_post thread has finished
[2026-03-09 22:26:23] 2026-03-09 21:25:25,750 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-09 22:26:23] 2026-03-09 21:25:26,471 | INFO     | [data] copytool_out thread has finished
[2026-03-09 22:26:23] 2026-03-09 21:25:26,637 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-09 22:26:23] 2026-03-09 21:25:26,721 | INFO     | [job] queue monitor thread has finished
[2026-03-09 22:26:23] 2026-03-09 21:25:30,642 | INFO     | [data] queue_monitor thread has finished
[2026-03-09 22:26:23] 2026-03-09 21:25:53,725 | INFO     | PID=1170160 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-09 22:26:23] 2026-03-09 21:25:53,725 | INFO     | .. there are 62 such processes running
[2026-03-09 22:26:23] 2026-03-09 21:25:53,725 | INFO     | found 0 job(s) in 20 queues
[2026-03-09 22:26:23] 2026-03-09 21:25:53,725 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-09 22:26:23] 2026-03-09 21:25:53,725 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-09 22:26:23] 2026-03-09 21:26:01,845 [wrapper] supervise_pilot (15 min periods counter: 8)
[2026-03-09 22:26:23] 2026-03-09 21:26:17,064 | INFO     | [monitor] cgroup control has ended
[2026-03-09 22:26:23] 2026-03-09 21:26:18,069 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22571194001216)>', '<ExcThread(monitor, started 22570954139392)>']
[2026-03-09 22:26:23] 2026-03-09 21:26:18,854 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-09 22:26:23] 2026-03-09 21:26:18,854 | INFO     | [monitor] control thread has ended
[2026-03-09 22:26:23] 2026-03-09 21:26:23,094 | INFO     | all workflow threads have been joined
[2026-03-09 22:26:23] 2026-03-09 21:26:23,094 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-09 22:26:23] 2026-03-09 21:26:23,094 | INFO     | traces error code: 0
[2026-03-09 22:26:23] 2026-03-09 21:26:23,094 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-09 22:26:23] 2026-03-09 21:26:23,208 [wrapper] ==== pilot stdout END ====
[2026-03-09 22:26:23] 2026-03-09 21:26:23,211 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-09 22:26:23] 2026-03-09 21:26:23,214 [wrapper] pilotpid: 1170160
[2026-03-09 22:26:23] 2026-03-09 21:26:23,216 [wrapper] Pilot exit status: 0
[2026-03-09 22:26:23] 2026-03-09 21:26:23,229 [wrapper] pandaids: 7046498522
[2026-03-09 22:26:23] 2026-03-09 21:26:23,350 [wrapper] cleanup supervisor_pilot 2215934 1170161
[2026-03-09 22:26:23] 2026-03-09 21:26:23,354 [wrapper] Test setup, not cleaning
[2026-03-09 22:26:23] 2026-03-09 21:26:23,357 [wrapper] apfmon messages muted
[2026-03-09 22:26:23] 2026-03-09 21:26:23,361 [wrapper] ==== wrapper stdout END ====
[2026-03-09 22:26:23] 2026-03-09 21:26:23,363 [wrapper] ==== wrapper stderr END ====
[2026-03-09 22:26:23]  *** Error codes and diagnostics ***
[2026-03-09 22:26:23]     "exeErrorCode": 0,
[2026-03-09 22:26:23]     "exeErrorDiag": "",
[2026-03-09 22:26:23]     "pilotErrorCode": 0,
[2026-03-09 22:26:23]     "pilotErrorDiag": "",
[2026-03-09 22:26:23]  *** Listing of results directory ***
[2026-03-09 22:26:23] total 408016
[2026-03-09 22:26:23] -rw-r--r--. 1 boinc boinc    584627 Mar  8 19:37 pilot3.tar.gz
[2026-03-09 22:26:23] -rw-r--r--. 1 boinc boinc      5111 Mar  8 19:37 queuedata.json
[2026-03-09 22:26:23] -rwx------. 1 boinc boinc     36322 Mar  8 19:37 runpilot2-wrapper.sh
[2026-03-09 22:26:23] -rw-r--r--. 1 boinc boinc       100 Mar  9 20:40 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-09 22:26:23] -rwxr-xr-x. 1 boinc boinc      7986 Mar  9 20:40 run_atlas
[2026-03-09 22:26:23] -rw-r--r--. 1 boinc boinc       105 Mar  9 20:40 job.xml
[2026-03-09 22:26:23] -rw-r--r--. 2 boinc boinc     15845 Mar  9 20:40 start_atlas.sh
[2026-03-09 22:26:23] drwxrwx--x. 2 boinc boinc      4096 Mar  9 20:40 shared
[2026-03-09 22:26:23] -rw-r--r--. 2 boinc boinc    597969 Mar  9 20:40 input.tar.gz
[2026-03-09 22:26:23] -rw-r--r--. 1 boinc boinc      6708 Mar  9 20:40 init_data.xml
[2026-03-09 22:26:23] -rw-r--r--. 2 boinc boinc 211561639 Mar  9 20:40 EVNT.48966985._000733.pool.root.1
[2026-03-09 22:26:23] -rw-r--r--. 1 boinc boinc         0 Mar  9 20:40 boinc_lockfile
[2026-03-09 22:26:23] -rw-r--r--. 1 boinc boinc      2592 Mar  9 20:40 pandaJob.out
[2026-03-09 22:26:23] -rw-------. 1 boinc boinc   1002746 Mar  9 20:41 agis_schedconf.cvmfs.json
[2026-03-09 22:26:23] -rw-------. 1 boinc boinc   1511578 Mar  9 20:41 agis_ddmendpoints.agis.ALL.json
[2026-03-09 22:26:23] -rw-------. 1 boinc boinc       445 Mar  9 20:41 workernode_map.json
[2026-03-09 22:26:23] drwx------. 5 boinc boinc      4096 Mar  9 20:41 pilot3
[2026-03-09 22:26:23] -rw-------. 1 boinc boinc 199895331 Mar  9 22:24 HITS.48966988._018784.pool.root.1
[2026-03-09 22:26:23] -rw-r--r--. 1 boinc boinc       529 Mar  9 22:25 boinc_task_state.xml
[2026-03-09 22:26:23] -rw-------. 1 boinc boinc        95 Mar  9 22:25 pilot_heartbeat.json
[2026-03-09 22:26:23] -rw-------. 1 boinc boinc      1031 Mar  9 22:25 memory_monitor_summary.json
[2026-03-09 22:26:23] -rw-------. 1 boinc boinc    303326 Mar  9 22:25 log.48966988._018784.job.log.tgz.1
[2026-03-09 22:26:23] -rw-------. 1 boinc boinc      6352 Mar  9 22:25 heartbeat.json
[2026-03-09 22:26:23] -rw-r--r--. 1 boinc boinc      8192 Mar  9 22:26 boinc_mmap_file
[2026-03-09 22:26:23] -rw-r--r--. 1 boinc boinc        27 Mar  9 22:26 wrapper_checkpoint.txt
[2026-03-09 22:26:23] -rw-------. 1 boinc boinc      5088 Mar  9 22:26 pilotlog.txt
[2026-03-09 22:26:23] -rw-------. 1 boinc boinc    904860 Mar  9 22:26 log.48966988._018784.job.log.1
[2026-03-09 22:26:23] -rw-------. 1 boinc boinc       357 Mar  9 22:26 output.list
[2026-03-09 22:26:23] -rw-r--r--. 1 boinc boinc       620 Mar  9 22:26 runtime_log
[2026-03-09 22:26:23] -rw-------. 1 boinc boinc   1228800 Mar  9 22:26 result.tar.gz
[2026-03-09 22:26:23] -rw-r--r--. 1 boinc boinc      9221 Mar  9 22:26 runtime_log.err
[2026-03-09 22:26:23] -rw-------. 1 boinc boinc       663 Mar  9 22:26 YiAODmfBYJ9n9Rq4apOajLDm4fhM0noT9bVooX4SDmPUXLDm1U0vEo.diag
[2026-03-09 22:26:23] -rw-r--r--. 1 boinc boinc     20780 Mar  9 22:26 stderr.txt
[2026-03-09 22:26:23] HITS file was successfully produced:
[2026-03-09 22:26:23] -rw-------. 1 boinc boinc 199895331 Mar  9 22:24 shared/HITS.pool.root.1
[2026-03-09 22:26:23]  *** Contents of shared directory: ***
[2026-03-09 22:26:23] total 403624
[2026-03-09 22:26:23] -rw-r--r--. 2 boinc boinc     15845 Mar  9 20:40 start_atlas.sh
[2026-03-09 22:26:23] -rw-r--r--. 2 boinc boinc    597969 Mar  9 20:40 input.tar.gz
[2026-03-09 22:26:23] -rw-r--r--. 2 boinc boinc 211561639 Mar  9 20:40 ATLAS.root_0
[2026-03-09 22:26:23] -rw-------. 1 boinc boinc 199895331 Mar  9 22:24 HITS.pool.root.1
[2026-03-09 22:26:23] -rw-------. 1 boinc boinc   1228800 Mar  9 22:26 result.tar.gz
22:26:25 (1164064): run_atlas exited; CPU time 24163.514631
22:26:25 (1164064): called boinc_finish(0)

</stderr_txt>
]]>

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