Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:13:05 (19385): wrapper (7.7.26015): starting
09:13:05 (19385): wrapper: running run_atlas (--nthreads 8)
[2026-03-09 09:13:05] Arguments: --nthreads 8
[2026-03-09 09:13:05] Threads: 8
[2026-03-09 09:13:05] Checking for CVMFS
[2026-03-09 09:13:06] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-09 09:13:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-09 09:13:07] Running cvmfs_config stat atlas.cern.ch
[2026-03-09 09:13:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-09 09:13:08] 2.11.2.0 27806 120102 136224 157069 0 94 19790363 25165825 1081 130560 165 39554294 99.808 27686621 969 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-09 09:13:08] CVMFS is ok
[2026-03-09 09:13:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-09 09:13:08] Checking for apptainer binary...
[2026-03-09 09:13:08] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-09 09:13:08] Running /usr/bin/apptainer --version
[2026-03-09 09:13:08] apptainer version 1.3.2-1.el7
[2026-03-09 09:13:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-09 09:13:37] cg-vwn467.simple-grid.lan
[2026-03-09 09:13:37] apptainer works
[2026-03-09 09:13:37] Set ATHENA_PROC_NUMBER=8
[2026-03-09 09:13:37] Set ATHENA_CORE_NUMBER=8
[2026-03-09 09:13:38] Starting ATLAS job with PandaID=7046609061
[2026-03-09 09:13:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-09 12:48:05]  *** The last 200 lines of the pilot log: ***
[2026-03-09 12:48:05] 2026-03-09 11:47:19,146 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-7046609061/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 12:48:05] 2026-03-09 11:47:19,147 | INFO     | extracted standard info from prmon json
[2026-03-09 12:48:05] 2026-03-09 11:47:19,147 | INFO     | extracted standard memory fields from prmon json
[2026-03-09 12:48:05] 2026-03-09 11:47:19,147 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-09 12:48:05] 2026-03-09 11:47:19,148 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-09 12:48:05] 2026-03-09 11:47:19,152 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-09 12:48:05] 2026-03-09 11:47:19,156 | INFO     | fitting pss+swap vs Time
[2026-03-09 12:48:05] 2026-03-09 11:47:19,157 | INFO     | sum of square deviations: 2443580700.0
[2026-03-09 12:48:05] 2026-03-09 11:47:19,159 | INFO     | sum of deviations: 54220352274.0
[2026-03-09 12:48:05] 2026-03-09 11:47:19,159 | INFO     | mean x: 1773050769.0
[2026-03-09 12:48:05] 2026-03-09 11:47:19,159 | INFO     | mean y: 2436648.5879396987
[2026-03-09 12:48:05] 2026-03-09 11:47:19,159 | INFO     | intersect: -39339598298.2696
[2026-03-09 12:48:05] 2026-03-09 11:47:19,159 | INFO     | chi2: 7.32728110059078
[2026-03-09 12:48:05] 2026-03-09 11:47:19,160 | INFO     | sum of square deviations: 2263977332.5
[2026-03-09 12:48:05] 2026-03-09 11:47:19,161 | INFO     | sum of deviations: 65968363318.99999
[2026-03-09 12:48:05] 2026-03-09 11:47:19,161 | INFO     | mean x: 1773050616.5
[2026-03-09 12:48:05] 2026-03-09 11:47:19,162 | INFO     | mean y: 2446396.9896907215
[2026-03-09 12:48:05] 2026-03-09 11:47:19,162 | INFO     | intersect: -51661165942.754845
[2026-03-09 12:48:05] 2026-03-09 11:47:19,162 | INFO     | chi2: 6.638027155490299
[2026-03-09 12:48:05] 2026-03-09 11:47:19,162 | INFO     | current chi2=6.638027155490299 (change=9.406680808859763 %)
[2026-03-09 12:48:05] 2026-03-09 11:47:19,162 | INFO     | right removable region: 193
[2026-03-09 12:48:05] 2026-03-09 11:47:19,163 | INFO     | sum of square deviations: 2263977332.5
[2026-03-09 12:48:05] 2026-03-09 11:47:19,164 | INFO     | sum of deviations: -12746341803.0
[2026-03-09 12:48:05] 2026-03-09 11:47:19,164 | INFO     | mean x: 1773050921.5
[2026-03-09 12:48:05] 2026-03-09 11:47:19,165 | INFO     | mean y: 2493452.4536082475
[2026-03-09 12:48:05] 2026-03-09 11:47:19,165 | INFO     | intersect: 9984887160.70118
[2026-03-09 12:48:05] 2026-03-09 11:47:19,165 | INFO     | chi2: 2.5882972707020677
[2026-03-09 12:48:05] 2026-03-09 11:47:19,165 | INFO     | current chi2=2.5882972707020677 (change=64.67588406710124 %)
[2026-03-09 12:48:05] 2026-03-09 11:47:19,166 | INFO     | sum of square deviations: 2093397390.0
[2026-03-09 12:48:05] 2026-03-09 11:47:19,167 | INFO     | sum of deviations: -48374362129.99999
[2026-03-09 12:48:05] 2026-03-09 11:47:19,167 | INFO     | mean x: 1773051074.0
[2026-03-09 12:48:05] 2026-03-09 11:47:19,167 | INFO     | mean y: 2525085.2486772486
[2026-03-09 12:48:05] 2026-03-09 11:47:19,167 | INFO     | intersect: 40974303849.461914
[2026-03-09 12:48:05] 2026-03-09 11:47:19,168 | INFO     | chi2: 1.003329977477232
[2026-03-09 12:48:05] 2026-03-09 11:47:19,168 | INFO     | current chi2=1.003329977477232 (change=61.23590636847205 %)
[2026-03-09 12:48:05] 2026-03-09 11:47:19,168 | INFO     | sum of square deviations: 1931608310.0
[2026-03-09 12:48:05] 2026-03-09 11:47:19,169 | INFO     | sum of deviations: -49180643660.0
[2026-03-09 12:48:05] 2026-03-09 11:47:19,170 | INFO     | mean x: 1773051226.5
[2026-03-09 12:48:05] 2026-03-09 11:47:19,170 | INFO     | mean y: 2525783.5
[2026-03-09 12:48:05] 2026-03-09 11:47:19,170 | INFO     | intersect: 45146150456.25907
[2026-03-09 12:48:05] 2026-03-09 11:47:19,170 | INFO     | chi2: 0.9706420116748922
[2026-03-09 12:48:05] 2026-03-09 11:47:19,170 | INFO     | current chi2=0.9706420116748922 (change=3.2579476878115665 %)
[2026-03-09 12:48:05] 2026-03-09 11:47:19,170 | INFO     | left removable region: 30
[2026-03-09 12:48:05] 2026-03-09 11:47:19,171 | INFO     | sum of square deviations: 1342841922.0
[2026-03-09 12:48:05] 2026-03-09 11:47:19,172 | INFO     | sum of deviations: -19709195952.99998
[2026-03-09 12:48:05] 2026-03-09 11:47:19,172 | INFO     | mean x: 1773051501.0
[2026-03-09 12:48:05] 2026-03-09 11:47:19,172 | INFO     | mean y: 2521041.993865031
[2026-03-09 12:48:05] 2026-03-09 11:47:19,172 | INFO     | intersect: 26026000720.02088
[2026-03-09 12:48:05] 2026-03-09 11:47:19,173 | INFO     | chi2: 0.15003101436385077
[2026-03-09 12:48:05] 2026-03-09 11:47:19,173 | INFO     | current memory leak: -14.68 B/s (using 163 data points, chi2=0.15)
[2026-03-09 12:48:05] 2026-03-09 11:47:19,173 | INFO     | could have reported an average CPU frequency of 2250 MHz (10 samples)
[2026-03-09 12:48:05] 2026-03-09 11:47:19,174 | INFO     | ..............................
[2026-03-09 12:48:05] 2026-03-09 11:47:19,174 | INFO     | . Timing measurements:
[2026-03-09 12:48:05] 2026-03-09 11:47:19,174 | INFO     | . get job = 0 s
[2026-03-09 12:48:05] 2026-03-09 11:47:19,174 | INFO     | . initial setup = 121 s
[2026-03-09 12:48:05] 2026-03-09 11:47:19,174 | INFO     | . payload setup = 158 s
[2026-03-09 12:48:05] 2026-03-09 11:47:19,174 | INFO     | . stage-in = 0 s
[2026-03-09 12:48:05] 2026-03-09 11:47:19,174 | INFO     | . payload execution = 12231 s
[2026-03-09 12:48:05] 2026-03-09 11:47:19,174 | INFO     | . stage-out = 2 s
[2026-03-09 12:48:05] 2026-03-09 11:47:19,174 | INFO     | . log creation = 0 s
[2026-03-09 12:48:05] 2026-03-09 11:47:19,175 | INFO     | ..............................
[2026-03-09 12:48:05] 2026-03-09 11:47:19,805 | INFO     | 
[2026-03-09 12:48:05] 2026-03-09 11:47:19,805 | INFO     | job summary report
[2026-03-09 12:48:05] 2026-03-09 11:47:19,806 | INFO     | --------------------------------------------------
[2026-03-09 12:48:05] 2026-03-09 11:47:19,806 | INFO     | PanDA job id: 7046609061
[2026-03-09 12:48:05] 2026-03-09 11:47:19,806 | INFO     | task id: 48966988
[2026-03-09 12:48:05] 2026-03-09 11:47:19,806 | INFO     | errors: (none)
[2026-03-09 12:48:05] 2026-03-09 11:47:19,806 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-09 12:48:05] 2026-03-09 11:47:19,806 | INFO     | pilot state: finished 
[2026-03-09 12:48:05] 2026-03-09 11:47:19,806 | INFO     | transexitcode: 0
[2026-03-09 12:48:05] 2026-03-09 11:47:19,806 | INFO     | exeerrorcode: 0
[2026-03-09 12:48:05] 2026-03-09 11:47:19,806 | INFO     | exeerrordiag: 
[2026-03-09 12:48:05] 2026-03-09 11:47:19,807 | INFO     | exitcode: 0
[2026-03-09 12:48:05] 2026-03-09 11:47:19,807 | INFO     | exitmsg: OK
[2026-03-09 12:48:05] 2026-03-09 11:47:19,807 | INFO     | cpuconsumptiontime: 62689 s
[2026-03-09 12:48:05] 2026-03-09 11:47:19,807 | INFO     | nevents: 400
[2026-03-09 12:48:05] 2026-03-09 11:47:19,807 | INFO     | neventsw: 0
[2026-03-09 12:48:05] 2026-03-09 11:47:19,807 | INFO     | pid: 27867
[2026-03-09 12:48:05] 2026-03-09 11:47:19,807 | INFO     | pgrp: 27867
[2026-03-09 12:48:05] 2026-03-09 11:47:19,807 | INFO     | corecount: 8
[2026-03-09 12:48:05] 2026-03-09 11:47:19,807 | INFO     | event service: False
[2026-03-09 12:48:05] 2026-03-09 11:47:19,808 | INFO     | sizes: {0: 2279181, 1: 2280239, 2: 2280327, 12394: 2310136, 12397: 2319134, 12399: 2319190, 12402: 2319512}
[2026-03-09 12:48:05] 2026-03-09 11:47:19,808 | INFO     | --------------------------------------------------
[2026-03-09 12:48:05] 2026-03-09 11:47:19,808 | INFO     | 
[2026-03-09 12:48:05] 2026-03-09 11:47:19,808 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2026-03-09 12:48:05] 2026-03-09 11:47:20,348 | INFO     | time since job start (12405s) is within the limit (349056.0s)
[2026-03-09 12:48:05] 2026-03-09 11:47:20,367 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-09 12:48:05] 2026-03-09 11:47:20,367 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-09 12:48:05] 2026-03-09 11:47:20,367 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-09 12:48:05] 2026-03-09 11:47:20,367 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-09 12:48:05] 2026-03-09 11:47:20,367 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-09 12:48:05] 2026-03-09 11:47:20,367 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-09 12:48:05] 2026-03-09 11:47:20,367 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-09 12:48:05] 2026-03-09 11:47:20,368 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-09 12:48:05] 2026-03-09 11:47:20,368 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-09 12:48:05] 2026-03-09 11:47:20,368 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-09 12:48:05] 2026-03-09 11:47:20,368 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-09 12:48:05] 2026-03-09 11:47:20,368 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-09 12:48:05] 2026-03-09 11:47:20,368 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-09 12:48:05] 2026-03-09 11:47:20,368 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-09 12:48:05] 2026-03-09 11:47:20,368 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-09 12:48:05] 2026-03-09 11:47:20,368 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-09 12:48:05] 2026-03-09 11:47:20,369 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-09 12:48:05] 2026-03-09 11:47:20,369 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-09 12:48:05] 2026-03-09 11:47:20,369 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-09 12:48:05] 2026-03-09 11:47:20,369 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-09 12:48:05] 2026-03-09 11:47:20,369 | INFO     | job 7046609061 has completed (purged errors)
[2026-03-09 12:48:05] 2026-03-09 11:47:20,369 | INFO     | overall cleanup function is called
[2026-03-09 12:48:05] 2026-03-09 11:47:21,376 | INFO     | --- collectZombieJob: --- 10, [27867]
[2026-03-09 12:48:05] 2026-03-09 11:47:21,376 | INFO     | zombie collector waiting for pid 27867
[2026-03-09 12:48:05] 2026-03-09 11:47:21,376 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-09 12:48:05] 2026-03-09 11:47:21,377 | INFO     | collected zombie processes
[2026-03-09 12:48:05] 2026-03-09 11:47:21,377 | INFO     | will attempt to kill all subprocesses of pid=27867
[2026-03-09 12:48:05] 2026-03-09 11:47:21,468 | INFO     | process IDs to be killed: [27867] (in reverse order)
[2026-03-09 12:48:05] 2026-03-09 11:47:22,407 | WARNING  | found no corresponding commands to process id(s)
[2026-03-09 12:48:05] 2026-03-09 11:47:22,407 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-09 12:48:05] 2026-03-09 11:47:22,409 | INFO     | did not find any defunct processes belonging to 27867
[2026-03-09 12:48:05] 2026-03-09 11:47:22,411 | INFO     | did not find any defunct processes belonging to 27867
[2026-03-09 12:48:05] 2026-03-09 11:47:22,411 | INFO     | ready for new job
[2026-03-09 12:48:05] 2026-03-09 11:47:22,411 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-09 12:48:05] 2026-03-09 11:47:22,413 | INFO     | **************************************
[2026-03-09 12:48:05] 2026-03-09 11:47:22,413 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-09 12:48:05] 2026-03-09 11:47:22,414 | INFO     | **************************************
[2026-03-09 12:48:05] 2026-03-09 11:47:22,414 | INFO     | 
[2026-03-09 12:48:05] 2026-03-09 11:47:22,414 | INFO     | pilot is running in a VM
[2026-03-09 12:48:05] 2026-03-09 11:47:22,414 | INFO     | architecture information:
[2026-03-09 12:48:05] 2026-03-09 11:47:22,415 | INFO     | executing command: cat /etc/os-release
[2026-03-09 12:48:05] 2026-03-09 11:47:22,678 | INFO     | cat /etc/os-release:
[2026-03-09 12:48:05] NAME="CentOS Linux"
[2026-03-09 12:48:05] VERSION="7 (Core)"
[2026-03-09 12:48:05] ID="centos"
[2026-03-09 12:48:05] ID_LIKE="rhel fedora"
[2026-03-09 12:48:05] VERSION_ID="7"
[2026-03-09 12:48:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-09 12:48:05] ANSI_COLOR="0;31"
[2026-03-09 12:48:05] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-09 12:48:05] HOME_URL="https://www.centos.org/"
[2026-03-09 12:48:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-09 12:48:05] 
[2026-03-09 12:48:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-09 12:48:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-09 12:48:05] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-09 12:48:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-09 12:48:05] 
[2026-03-09 12:48:05] 2026-03-09 11:47:22,679 | INFO     | **************************************
[2026-03-09 12:48:05] 2026-03-09 11:47:23,182 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2026-03-09 12:48:05] 2026-03-09 11:47:23,464 | INFO     | sufficient remaining disk space (497232642048 B)
[2026-03-09 12:48:05] 2026-03-09 11:47:23,464 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-09 12:48:05] 2026-03-09 11:47:23,464 | INFO     | current server update state: UPDATING_FINAL
[2026-03-09 12:48:05] 2026-03-09 11:47:23,464 | INFO     | update_server=False
[2026-03-09 12:48:05] 2026-03-09 11:47:23,464 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-09 12:48:05] 2026-03-09 11:47:23,465 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-09 12:48:05] 2026-03-09 11:47:23,465 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-09 12:48:05] 2026-03-09 11:47:23,489 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-09 12:48:05] 2026-03-09 11:47:23,489 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-09 12:48:05] 2026-03-09 11:47:23,490 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-09 12:48:05] 2026-03-09 11:47:23,490 | INFO     | will abort loop
[2026-03-09 12:48:05] 2026-03-09 11:47:23,618 | INFO     | all data control threads have been joined
[2026-03-09 12:48:05] 2026-03-09 11:47:24,331 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-09 12:48:05] 2026-03-09 11:47:24,382 | INFO     | all payload control threads have been joined
[2026-03-09 12:48:05] 2026-03-09 11:47:24,470 | INFO     | [job] retrieve thread has finished
[2026-03-09 12:48:05] 2026-03-09 11:47:24,495 | INFO     | [job] job monitor thread has finished
[2026-03-09 12:48:05] 2026-03-09 11:47:24,555 | INFO     | [data] copytool_in thread has finished
[2026-03-09 12:48:05] 2026-03-09 11:47:24,575 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-09 12:48:05] 2026-03-09 11:47:24,624 | INFO     | [data] control thread has finished
[2026-03-09 12:48:05] 2026-03-09 11:47:24,799 | INFO     | [payload] failed_post thread has finished
[2026-03-09 12:48:05] 2026-03-09 11:47:24,832 | INFO     | all job control threads have been joined
[2026-03-09 12:48:05] 2026-03-09 11:47:25,337 | INFO     | [job] queue monitor thread has finished
[2026-03-09 12:48:05] 2026-03-09 11:47:25,388 | INFO     | [payload] control thread has finished
[2026-03-09 12:48:05] 2026-03-09 11:47:25,408 | INFO     | [payload] validate_post thread has finished
[2026-03-09 12:48:05] 2026-03-09 11:47:25,471 | INFO     | [data] copytool_out thread has finished
[2026-03-09 12:48:05] 2026-03-09 11:47:25,499 | INFO     | [job] validate thread has finished
[2026-03-09 12:48:05] 2026-03-09 11:47:25,747 | INFO     | [payload] validate_pre thread has finished
[2026-03-09 12:48:05] 2026-03-09 11:47:25,838 | INFO     | [job] control thread has finished
[2026-03-09 12:48:05] 2026-03-09 11:47:25,893 | INFO     | [payload] execute_payloads thread has finished
[2026-03-09 12:48:05] 2026-03-09 11:47:25,946 | INFO     | [job] create_data_payload thread has finished
[2026-03-09 12:48:05] 2026-03-09 11:47:27,474 | INFO     | [data] queue_monitor thread has finished
[2026-03-09 12:48:05] 2026-03-09 11:47:53,481 | INFO     | PID=23384 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-09 12:48:05] 2026-03-09 11:47:53,481 | INFO     | .. there are 2 such processes running
[2026-03-09 12:48:05] 2026-03-09 11:47:53,481 | INFO     | found 0 job(s) in 20 queues
[2026-03-09 12:48:05] 2026-03-09 11:47:53,481 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-09 12:48:05] 2026-03-09 11:47:53,481 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-09 12:48:05] 2026-03-09 11:47:55,440 | INFO     | [monitor] cgroup control has ended
[2026-03-09 12:48:05] 2026-03-09 11:47:55,736 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140534223890240)>', '<ExcThread(monitor, started 140533787772672)>']
[2026-03-09 12:48:05] 2026-03-09 11:47:56,499 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-09 12:48:05] 2026-03-09 11:47:56,499 | INFO     | [monitor] control thread has ended
[2026-03-09 12:48:05] 2026-03-09 11:48:00,762 | INFO     | all workflow threads have been joined
[2026-03-09 12:48:05] 2026-03-09 11:48:00,762 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-09 12:48:05] 2026-03-09 11:48:00,763 | INFO     | traces error code: 0
[2026-03-09 12:48:05] 2026-03-09 11:48:00,763 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-09 12:48:05] 2026-03-09 11:48:01,060 [wrapper] ==== pilot stdout END ====
[2026-03-09 12:48:05] 2026-03-09 11:48:01,137 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-09 12:48:05] 2026-03-09 11:48:01,240 [wrapper] pilotpid: 23384
[2026-03-09 12:48:05] 2026-03-09 11:48:01,339 [wrapper] Pilot exit status: 0
[2026-03-09 12:48:05] 2026-03-09 11:48:01,842 [wrapper] pandaids: 7046609061
[2026-03-09 12:48:05] 2026-03-09 11:48:02,530 [wrapper] cleanup supervisor_pilot 17331 23385
[2026-03-09 12:48:05] 2026-03-09 11:48:02,640 [wrapper] Test setup, not cleaning
[2026-03-09 12:48:05] 2026-03-09 11:48:02,709 [wrapper] apfmon messages muted
[2026-03-09 12:48:05] 2026-03-09 11:48:02,761 [wrapper] ==== wrapper stdout END ====
[2026-03-09 12:48:05] 2026-03-09 11:48:02,845 [wrapper] ==== wrapper stderr END ====
[2026-03-09 12:48:05]  *** Error codes and diagnostics ***
[2026-03-09 12:48:05]     "exeErrorCode": 0,
[2026-03-09 12:48:05]     "exeErrorDiag": "",
[2026-03-09 12:48:05]     "pilotErrorCode": 0,
[2026-03-09 12:48:05]     "pilotErrorDiag": "",
[2026-03-09 12:48:05]  *** Listing of results directory ***
[2026-03-09 12:48:05] total 407300
[2026-03-09 12:48:05] -rw-r--r--. 1 boinc boinc    584627 Mar  8 22:54 pilot3.tar.gz
[2026-03-09 12:48:05] -rwx------. 1 boinc boinc     36322 Mar  8 22:56 runpilot2-wrapper.sh
[2026-03-09 12:48:05] -rw-r--r--. 1 boinc boinc      5111 Mar  8 22:56 queuedata.json
[2026-03-09 12:48:05] -rw-r--r--. 1 boinc boinc       100 Mar  9 09:13 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-09 12:48:05] -rwxr-xr-x. 1 boinc boinc      7986 Mar  9 09:13 run_atlas
[2026-03-09 12:48:05] -rw-r--r--. 1 boinc boinc       105 Mar  9 09:13 job.xml
[2026-03-09 12:48:05] -rw-r--r--. 1 boinc boinc      6390 Mar  9 09:13 init_data.xml
[2026-03-09 12:48:05] -rw-r--r--. 2 boinc boinc 211323610 Mar  9 09:13 EVNT.48966985._000772.pool.root.1
[2026-03-09 12:48:05] -rw-r--r--. 2 boinc boinc     15845 Mar  9 09:13 start_atlas.sh
[2026-03-09 12:48:05] drwxrwx--x. 2 boinc boinc        68 Mar  9 09:13 shared
[2026-03-09 12:48:05] -rw-r--r--. 2 boinc boinc    597971 Mar  9 09:13 input.tar.gz
[2026-03-09 12:48:05] -rw-r--r--. 1 boinc boinc         0 Mar  9 09:13 boinc_lockfile
[2026-03-09 12:48:05] -rw-r--r--. 1 boinc boinc      2592 Mar  9 09:13 pandaJob.out
[2026-03-09 12:48:05] -rw-------. 1 boinc boinc       413 Mar  9 09:20 workernode_map.json
[2026-03-09 12:48:05] -rw-------. 1 boinc boinc    987066 Mar  9 09:20 agis_schedconf.cvmfs.json
[2026-03-09 12:48:05] drwx------. 5 boinc boinc      4096 Mar  9 09:20 pilot3
[2026-03-09 12:48:05] -rw-------. 1 boinc boinc 197465920 Mar  9 12:46 HITS.48966988._019756.pool.root.1
[2026-03-09 12:48:05] -rw-r--r--. 1 boinc boinc       530 Mar  9 12:46 boinc_task_state.xml
[2026-03-09 12:48:05] -rw-------. 1 boinc boinc        95 Mar  9 12:47 pilot_heartbeat.json
[2026-03-09 12:48:05] -rw-------. 1 boinc boinc      1022 Mar  9 12:47 memory_monitor_summary.json
[2026-03-09 12:48:05] -rw-------. 1 boinc boinc   1511578 Mar  9 12:47 agis_ddmendpoints.agis.ALL.json
[2026-03-09 12:48:05] -rw-------. 1 boinc boinc    432911 Mar  9 12:47 log.48966988._019756.job.log.tgz.1
[2026-03-09 12:48:05] -rw-------. 1 boinc boinc      6331 Mar  9 12:47 heartbeat.json
[2026-03-09 12:48:05] -rw-------. 1 boinc boinc      5066 Mar  9 12:48 pilotlog.txt
[2026-03-09 12:48:05] -rw-------. 1 boinc boinc   1758990 Mar  9 12:48 log.48966988._019756.job.log.1
[2026-03-09 12:48:05] -rw-r--r--. 1 boinc boinc        28 Mar  9 12:48 wrapper_checkpoint.txt
[2026-03-09 12:48:05] -rw-------. 1 boinc boinc       357 Mar  9 12:48 output.list
[2026-03-09 12:48:05] -rw-r--r--. 1 boinc boinc       620 Mar  9 12:48 runtime_log
[2026-03-09 12:48:05] -rw-------. 1 boinc boinc   2211840 Mar  9 12:48 result.tar.gz
[2026-03-09 12:48:05] -rw-r--r--. 1 boinc boinc      8816 Mar  9 12:48 runtime_log.err
[2026-03-09 12:48:05] -rw-------. 1 boinc boinc       655 Mar  9 12:48 lkENDmzHbJ9n9Rq4apOajLDm4fhM0noT9bVooX4SDm0xXLDmak5Fsm.diag
[2026-03-09 12:48:05] -rw-r--r--. 1 boinc boinc      8192 Mar  9 12:48 boinc_mmap_file
[2026-03-09 12:48:05] -rw-r--r--. 1 boinc boinc     20713 Mar  9 12:48 stderr.txt
[2026-03-09 12:48:05] HITS file was successfully produced:
[2026-03-09 12:48:05] -rw-------. 1 boinc boinc 197465920 Mar  9 12:46 shared/HITS.pool.root.1
[2026-03-09 12:48:05]  *** Contents of shared directory: ***
[2026-03-09 12:48:05] total 401972
[2026-03-09 12:48:05] -rw-r--r--. 2 boinc boinc 211323610 Mar  9 09:13 ATLAS.root_0
[2026-03-09 12:48:05] -rw-r--r--. 2 boinc boinc     15845 Mar  9 09:13 start_atlas.sh
[2026-03-09 12:48:05] -rw-r--r--. 2 boinc boinc    597971 Mar  9 09:13 input.tar.gz
[2026-03-09 12:48:05] -rw-------. 1 boinc boinc 197465920 Mar  9 12:46 HITS.pool.root.1
[2026-03-09 12:48:05] -rw-------. 1 boinc boinc   2211840 Mar  9 12:48 result.tar.gz
12:48:06 (19385): run_atlas exited; CPU time 62808.441640
12:48:06 (19385): called boinc_finish(0)

</stderr_txt>
]]>

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