Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:43:25 (717730): wrapper (7.7.26015): starting
16:43:25 (717730): wrapper: running run_atlas (--nthreads 9)
[2026-03-08 16:43:25] Arguments: --nthreads 9
[2026-03-08 16:43:26] Threads: 9
[2026-03-08 16:43:26] Checking for CVMFS
[2026-03-08 16:43:26] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-08 16:43:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-08 16:43:26] Running cvmfs_config stat atlas.cern.ch
[2026-03-08 16:43:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-08 16:43:26] 2.13.3.0 7558 177425 397944 157052 3 730 25335072 32935936 18983 16776704 0 501626122 99.474 730770066 37832 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-03-08 16:43:26] CVMFS is ok
[2026-03-08 16:43:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-08 16:43:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-08 16:43:26] Further information can be found at the LHC@home message board.
[2026-03-08 16:43:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-08 16:43:26] Checking for apptainer binary...
[2026-03-08 16:43:26] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-08 16:43:26] Running /usr/bin/apptainer --version
[2026-03-08 16:43:26] apptainer version 1.4.5-2.el9
[2026-03-08 16:43:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-08 16:43:27] c6-6-39-2.aglt2.org
[2026-03-08 16:43:27] apptainer works
[2026-03-08 16:43:27] Set ATHENA_PROC_NUMBER=9
[2026-03-08 16:43:27] Set ATHENA_CORE_NUMBER=9
[2026-03-08 16:43:27] Starting ATLAS job with PandaID=7033408301
[2026-03-08 16:43:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-08 23:15:08]  *** The last 200 lines of the pilot log: ***
[2026-03-08 23:15:08] 2026-03-09 03:14:19,217 | INFO     | job 7033408301 has finished - writing final server update
[2026-03-08 23:15:08] 2026-03-09 03:14:19,217 | INFO     | total number of processed events: 400 (read)
[2026-03-08 23:15:08] 2026-03-09 03:14:19,281 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-7033408301/memory_monitor_summary.json (trf name=prmon)
[2026-03-08 23:15:08] 2026-03-09 03:14:19,282 | INFO     | extracted standard info from prmon json
[2026-03-08 23:15:08] 2026-03-09 03:14:19,282 | INFO     | extracted standard memory fields from prmon json
[2026-03-08 23:15:08] 2026-03-09 03:14:19,282 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-08 23:15:08] 2026-03-09 03:14:19,290 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-08 23:15:08] 2026-03-09 03:14:19,290 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-08 23:15:08] 2026-03-09 03:14:19,333 | INFO     | fitting pss+swap vs Time
[2026-03-08 23:15:08] 2026-03-09 03:14:19,340 | INFO     | sum of square deviations: 17421448762.64222
[2026-03-08 23:15:08] 2026-03-09 03:14:19,343 | INFO     | sum of deviations: 257791148840.49597
[2026-03-08 23:15:08] 2026-03-09 03:14:19,343 | INFO     | mean x: 1773014387.5900784
[2026-03-08 23:15:08] 2026-03-09 03:14:19,343 | INFO     | mean y: 2463432.130548303
[2026-03-08 23:15:08] 2026-03-09 03:14:19,384 | INFO     | intersect: -26233438192.060993
[2026-03-08 23:15:08] 2026-03-09 03:14:19,384 | INFO     | chi2: 6.309392105364248
[2026-03-08 23:15:08] 2026-03-09 03:14:19,385 | INFO     | sum of square deviations: 16748077050.571398
[2026-03-08 23:15:08] 2026-03-09 03:14:19,395 | INFO     | sum of deviations: 302808277476.0952
[2026-03-08 23:15:08] 2026-03-09 03:14:19,395 | INFO     | mean x: 1773014235.0952382
[2026-03-08 23:15:08] 2026-03-09 03:14:19,395 | INFO     | mean y: 2473539.2195767197
[2026-03-08 23:15:08] 2026-03-09 03:14:19,395 | INFO     | intersect: -32053946123.08838
[2026-03-08 23:15:08] 2026-03-09 03:14:19,396 | INFO     | chi2: 4.917373736888443
[2026-03-08 23:15:08] 2026-03-09 03:14:19,414 | INFO     | current chi2=4.917373736888443 (change=22.06263844804177 %)
[2026-03-08 23:15:08] 2026-03-09 03:14:19,414 | INFO     | right removable region: 377
[2026-03-08 23:15:08] 2026-03-09 03:14:19,414 | INFO     | sum of square deviations: 16747962553.378353
[2026-03-08 23:15:08] 2026-03-09 03:14:19,417 | INFO     | sum of deviations: 145642897231.61353
[2026-03-08 23:15:08] 2026-03-09 03:14:19,434 | INFO     | mean x: 1773014540.0978837
[2026-03-08 23:15:08] 2026-03-09 03:14:19,434 | INFO     | mean y: 2488799.7671957673
[2026-03-08 23:15:08] 2026-03-09 03:14:19,434 | INFO     | intersect: -15415922462.535498
[2026-03-08 23:15:08] 2026-03-09 03:14:19,435 | INFO     | chi2: 3.128629612508344
[2026-03-08 23:15:08] 2026-03-09 03:14:19,435 | INFO     | current chi2=3.128629612508344 (change=50.413137109542106 %)
[2026-03-08 23:15:08] 2026-03-09 03:14:19,435 | INFO     | sum of square deviations: 16092081249.27605
[2026-03-08 23:15:08] 2026-03-09 03:14:19,451 | INFO     | sum of deviations: 83661874402.80963
[2026-03-08 23:15:08] 2026-03-09 03:14:19,452 | INFO     | mean x: 1773014692.6032171
[2026-03-08 23:15:08] 2026-03-09 03:14:19,452 | INFO     | mean y: 2503180.9919571048
[2026-03-08 23:15:08] 2026-03-09 03:14:19,452 | INFO     | intersect: -9215305891.006092
[2026-03-08 23:15:08] 2026-03-09 03:14:19,452 | INFO     | chi2: 2.172325060215102
[2026-03-08 23:15:08] 2026-03-09 03:14:19,453 | INFO     | current chi2=2.172325060215102 (change=30.56624371481722 %)
[2026-03-08 23:15:08] 2026-03-09 03:14:19,453 | INFO     | sum of square deviations: 15453594614.076086
[2026-03-08 23:15:08] 2026-03-09 03:14:19,478 | INFO     | sum of deviations: 50892176908.00003
[2026-03-08 23:15:08] 2026-03-09 03:14:19,478 | INFO     | mean x: 1773014845.1032608
[2026-03-08 23:15:08] 2026-03-09 03:14:19,478 | INFO     | mean y: 2511006.5
[2026-03-08 23:15:08] 2026-03-09 03:14:19,479 | INFO     | intersect: -5836427273.614842
[2026-03-08 23:15:08] 2026-03-09 03:14:19,479 | INFO     | chi2: 1.942195111370564
[2026-03-08 23:15:08] 2026-03-09 03:14:19,479 | INFO     | current chi2=1.942195111370564 (change=10.593716062997991 %)
[2026-03-08 23:15:08] 2026-03-09 03:14:19,479 | INFO     | left removable region: 30
[2026-03-08 23:15:08] 2026-03-09 03:14:19,484 | INFO     | sum of square deviations: 12956099423.296814
[2026-03-08 23:15:08] 2026-03-09 03:14:19,496 | INFO     | sum of deviations: 47485169705.08355
[2026-03-08 23:15:08] 2026-03-09 03:14:19,497 | INFO     | mean x: 1773015119.6253603
[2026-03-08 23:15:08] 2026-03-09 03:14:19,497 | INFO     | mean y: 2534769.331412104
[2026-03-08 23:15:08] 2026-03-09 03:14:19,497 | INFO     | intersect: -6495711430.732536
[2026-03-08 23:15:08] 2026-03-09 03:14:19,497 | INFO     | chi2: 0.32646087593700185
[2026-03-08 23:15:08] 2026-03-09 03:14:19,498 | INFO     | current memory leak: 3.67 B/s (using 347 data points, chi2=0.33)
[2026-03-08 23:15:08] 2026-03-09 03:14:19,498 | INFO     | could have reported an average CPU frequency of 2910 MHz (16 samples)
[2026-03-08 23:15:08] 2026-03-09 03:14:19,498 | INFO     | ..............................
[2026-03-08 23:15:08] 2026-03-09 03:14:19,499 | INFO     | . Timing measurements:
[2026-03-08 23:15:08] 2026-03-09 03:14:19,509 | INFO     | . get job = 0 s
[2026-03-08 23:15:08] 2026-03-09 03:14:19,509 | INFO     | . initial setup = 28 s
[2026-03-08 23:15:08] 2026-03-09 03:14:19,509 | INFO     | . payload setup = 36 s
[2026-03-08 23:15:08] 2026-03-09 03:14:19,509 | INFO     | . stage-in = 0 s
[2026-03-08 23:15:08] 2026-03-09 03:14:19,509 | INFO     | . payload execution = 23336 s
[2026-03-08 23:15:08] 2026-03-09 03:14:19,509 | INFO     | . stage-out = 6 s
[2026-03-08 23:15:08] 2026-03-09 03:14:19,509 | INFO     | . log creation = 1 s
[2026-03-08 23:15:08] 2026-03-09 03:14:19,509 | INFO     | ..............................
[2026-03-08 23:15:08] 2026-03-09 03:14:20,256 | INFO     | 
[2026-03-08 23:15:08] 2026-03-09 03:14:20,257 | INFO     | job summary report
[2026-03-08 23:15:08] 2026-03-09 03:14:20,257 | INFO     | --------------------------------------------------
[2026-03-08 23:15:08] 2026-03-09 03:14:20,257 | INFO     | PanDA job id: 7033408301
[2026-03-08 23:15:08] 2026-03-09 03:14:20,257 | INFO     | task id: 48700922
[2026-03-08 23:15:08] 2026-03-09 03:14:20,257 | INFO     | errors: (none)
[2026-03-08 23:15:08] 2026-03-09 03:14:20,257 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-08 23:15:08] 2026-03-09 03:14:20,257 | INFO     | pilot state: finished 
[2026-03-08 23:15:08] 2026-03-09 03:14:20,257 | INFO     | transexitcode: 0
[2026-03-08 23:15:08] 2026-03-09 03:14:20,257 | INFO     | exeerrorcode: 0
[2026-03-08 23:15:08] 2026-03-09 03:14:20,257 | INFO     | exeerrordiag: 
[2026-03-08 23:15:08] 2026-03-09 03:14:20,257 | INFO     | exitcode: 0
[2026-03-08 23:15:08] 2026-03-09 03:14:20,257 | INFO     | exitmsg: OK
[2026-03-08 23:15:08] 2026-03-09 03:14:20,257 | INFO     | cpuconsumptiontime: 31872 s
[2026-03-08 23:15:08] 2026-03-09 03:14:20,257 | INFO     | nevents: 400
[2026-03-08 23:15:08] 2026-03-09 03:14:20,257 | INFO     | neventsw: 0
[2026-03-08 23:15:08] 2026-03-09 03:14:20,257 | INFO     | pid: 727578
[2026-03-08 23:15:08] 2026-03-09 03:14:20,258 | INFO     | pgrp: 727578
[2026-03-08 23:15:08] 2026-03-09 03:14:20,258 | INFO     | corecount: 9
[2026-03-08 23:15:08] 2026-03-09 03:14:20,258 | INFO     | event service: False
[2026-03-08 23:15:08] 2026-03-09 03:14:20,258 | INFO     | sizes: {0: 2279082, 2: 2279683, 3: 2279767, 4: 2279823, 5: 2280312, 23378: 2315047, 23379: 2315174, 23387: 2324228, 23391: 2324284, 23394: 2324478}
[2026-03-08 23:15:08] 2026-03-09 03:14:20,258 | INFO     | --------------------------------------------------
[2026-03-08 23:15:08] 2026-03-09 03:14:20,258 | INFO     | 
[2026-03-08 23:15:08] 2026-03-09 03:14:20,258 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-03-08 23:15:08] 2026-03-09 03:14:20,298 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-08 23:15:08] 2026-03-09 03:14:20,299 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-08 23:15:08] 2026-03-09 03:14:20,299 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-08 23:15:08] 2026-03-09 03:14:20,299 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-08 23:15:08] 2026-03-09 03:14:20,299 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-08 23:15:08] 2026-03-09 03:14:20,299 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-08 23:15:08] 2026-03-09 03:14:20,299 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-08 23:15:08] 2026-03-09 03:14:20,299 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-08 23:15:08] 2026-03-09 03:14:20,299 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-08 23:15:08] 2026-03-09 03:14:20,299 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-08 23:15:08] 2026-03-09 03:14:20,299 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-08 23:15:08] 2026-03-09 03:14:20,300 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-08 23:15:08] 2026-03-09 03:14:20,300 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-08 23:15:08] 2026-03-09 03:14:20,300 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-08 23:15:08] 2026-03-09 03:14:20,300 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-08 23:15:08] 2026-03-09 03:14:20,300 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-08 23:15:08] 2026-03-09 03:14:20,300 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-08 23:15:08] 2026-03-09 03:14:20,300 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-08 23:15:08] 2026-03-09 03:14:20,300 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-08 23:15:08] 2026-03-09 03:14:20,300 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-08 23:15:08] 2026-03-09 03:14:20,300 | INFO     | job 7033408301 has completed (purged errors)
[2026-03-08 23:15:08] 2026-03-09 03:14:20,300 | INFO     | overall cleanup function is called
[2026-03-08 23:15:08] 2026-03-09 03:14:21,462 | INFO     | --- collectZombieJob: --- 10, [727578]
[2026-03-08 23:15:08] 2026-03-09 03:14:21,462 | INFO     | zombie collector waiting for pid 727578
[2026-03-08 23:15:08] 2026-03-09 03:14:21,462 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-08 23:15:08] 2026-03-09 03:14:21,462 | INFO     | collected zombie processes
[2026-03-08 23:15:08] 2026-03-09 03:14:21,463 | INFO     | will attempt to kill all subprocesses of pid=727578
[2026-03-08 23:15:08] 2026-03-09 03:14:23,589 | INFO     | PID=722142 has CPU usage=10.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-08 23:15:08] 2026-03-09 03:14:23,590 | INFO     | .. there are 22 such processes running
[2026-03-08 23:15:08] 2026-03-09 03:14:24,945 | INFO     | process IDs to be killed: [727578] (in reverse order)
[2026-03-08 23:15:08] 2026-03-09 03:14:25,119 | WARNING  | found no corresponding commands to process id(s)
[2026-03-08 23:15:08] 2026-03-09 03:14:25,119 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-08 23:15:08] 2026-03-09 03:14:25,136 | INFO     | did not find any defunct processes belonging to 727578
[2026-03-08 23:15:08] 2026-03-09 03:14:25,153 | INFO     | did not find any defunct processes belonging to 727578
[2026-03-08 23:15:08] 2026-03-09 03:14:25,154 | INFO     | ready for new job
[2026-03-08 23:15:08] 2026-03-09 03:14:25,154 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-08 23:15:08] 2026-03-09 03:14:25,157 | INFO     | **************************************
[2026-03-08 23:15:08] 2026-03-09 03:14:25,157 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-08 23:15:08] 2026-03-09 03:14:25,158 | INFO     | **************************************
[2026-03-08 23:15:08] 2026-03-09 03:14:25,158 | INFO     | 
[2026-03-08 23:15:08] 2026-03-09 03:14:25,162 | INFO     | architecture information:
[2026-03-08 23:15:08] 2026-03-09 03:14:25,165 | INFO     | executing command: cat /etc/os-release
[2026-03-08 23:15:08] 2026-03-09 03:14:25,190 | INFO     | cat /etc/os-release:
[2026-03-08 23:15:08] NAME="CentOS Linux"
[2026-03-08 23:15:08] VERSION="7 (Core)"
[2026-03-08 23:15:08] ID="centos"
[2026-03-08 23:15:08] ID_LIKE="rhel fedora"
[2026-03-08 23:15:08] VERSION_ID="7"
[2026-03-08 23:15:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-08 23:15:08] ANSI_COLOR="0;31"
[2026-03-08 23:15:08] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-08 23:15:08] HOME_URL="https://www.centos.org/"
[2026-03-08 23:15:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-08 23:15:08] 
[2026-03-08 23:15:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-08 23:15:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-08 23:15:08] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-08 23:15:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-08 23:15:08] 
[2026-03-08 23:15:08] 2026-03-09 03:14:25,191 | INFO     | **************************************
[2026-03-08 23:15:08] 2026-03-09 03:14:25,694 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-03-08 23:15:08] 2026-03-09 03:14:25,754 | INFO     | sufficient remaining disk space (75123130368 B)
[2026-03-08 23:15:08] 2026-03-09 03:14:25,756 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-08 23:15:08] 2026-03-09 03:14:25,756 | INFO     | current server update state: UPDATING_FINAL
[2026-03-08 23:15:08] 2026-03-09 03:14:25,756 | INFO     | update_server=False
[2026-03-08 23:15:08] 2026-03-09 03:14:25,756 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-08 23:15:08] 2026-03-09 03:14:25,770 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-08 23:15:08] 2026-03-09 03:14:26,083 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-08 23:15:08] 2026-03-09 03:14:26,083 | INFO     | aborting loop
[2026-03-08 23:15:08] 2026-03-09 03:14:26,109 | INFO     | all payload control threads have been joined
[2026-03-08 23:15:08] 2026-03-09 03:14:26,152 | INFO     | all data control threads have been joined
[2026-03-08 23:15:08] 2026-03-09 03:14:26,452 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-08 23:15:08] 2026-03-09 03:14:26,762 | INFO     | [job] retrieve thread has finished
[2026-03-08 23:15:08] 2026-03-09 03:14:26,776 | INFO     | [job] queue monitor thread has finished
[2026-03-08 23:15:08] 2026-03-09 03:14:27,070 | INFO     | all job control threads have been joined
[2026-03-08 23:15:08] 2026-03-09 03:14:27,089 | INFO     | [job] job monitor thread has finished
[2026-03-08 23:15:08] 2026-03-09 03:14:27,115 | INFO     | [payload] control thread has finished
[2026-03-08 23:15:08] 2026-03-09 03:14:27,158 | INFO     | [data] control thread has finished
[2026-03-08 23:15:08] 2026-03-09 03:14:27,258 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-08 23:15:08] 2026-03-09 03:14:27,320 | INFO     | [payload] validate_post thread has finished
[2026-03-08 23:15:08] 2026-03-09 03:14:27,410 | INFO     | [job] create_data_payload thread has finished
[2026-03-08 23:15:08] 2026-03-09 03:14:27,416 | INFO     | [payload] validate_pre thread has finished
[2026-03-08 23:15:08] 2026-03-09 03:14:27,462 | INFO     | [payload] failed_post thread has finished
[2026-03-08 23:15:08] 2026-03-09 03:14:27,939 | INFO     | [data] copytool_in thread has finished
[2026-03-08 23:15:08] 2026-03-09 03:14:28,048 | INFO     | [payload] execute_payloads thread has finished
[2026-03-08 23:15:08] 2026-03-09 03:14:28,076 | INFO     | [job] control thread has finished
[2026-03-08 23:15:08] 2026-03-09 03:14:28,137 | INFO     | [job] validate thread has finished
[2026-03-08 23:15:08] 2026-03-09 03:14:28,137 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-08 23:15:08] 2026-03-09 03:14:28,459 | INFO     | [data] copytool_out thread has finished
[2026-03-08 23:15:08] 2026-03-09 03:14:31,268 | INFO     | [data] queue_monitor thread has finished
[2026-03-08 23:15:08] 2026-03-09 03:14:56,562 | INFO     | PID=722142 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-08 23:15:08] 2026-03-09 03:14:56,562 | INFO     | .. there are 22 such processes running
[2026-03-08 23:15:08] 2026-03-09 03:14:56,562 | INFO     | found 0 job(s) in 20 queues
[2026-03-08 23:15:08] 2026-03-09 03:14:56,562 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-08 23:15:08] 2026-03-09 03:14:56,562 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-08 23:15:08] 2026-03-09 03:15:00,414 | INFO     | [monitor] cgroup control has ended
[2026-03-08 23:15:08] 2026-03-09 03:15:02,054 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139928732456768)>', '<ExcThread(monitor, started 139927945733888)>']
[2026-03-08 23:15:08] 2026-03-09 03:15:02,598 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-08 23:15:08] 2026-03-09 03:15:02,598 | INFO     | [monitor] control thread has ended
[2026-03-08 23:15:08] 2026-03-09 03:15:07,080 | INFO     | all workflow threads have been joined
[2026-03-08 23:15:08] 2026-03-09 03:15:07,080 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-08 23:15:08] 2026-03-09 03:15:07,080 | INFO     | traces error code: 0
[2026-03-08 23:15:08] 2026-03-09 03:15:07,081 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-08 23:15:08] 2026-03-09 03:15:07,283 [wrapper] ==== pilot stdout END ====
[2026-03-08 23:15:08] 2026-03-09 03:15:07,286 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-08 23:15:08] 2026-03-09 03:15:07,297 [wrapper] pilotpid: 722142
[2026-03-08 23:15:08] 2026-03-09 03:15:07,326 [wrapper] Pilot exit status: 0
[2026-03-08 23:15:08] 2026-03-09 03:15:07,482 [wrapper] pandaids: 7033408301
[2026-03-08 23:15:08] 2026-03-09 03:15:07,794 [wrapper] cleanup supervisor_pilot 1721998 722143
[2026-03-08 23:15:08] 2026-03-09 03:15:07,819 [wrapper] Test setup, not cleaning
[2026-03-08 23:15:08] 2026-03-09 03:15:07,866 [wrapper] apfmon messages muted
[2026-03-08 23:15:08] 2026-03-09 03:15:07,906 [wrapper] ==== wrapper stdout END ====
[2026-03-08 23:15:08] 2026-03-09 03:15:07,931 [wrapper] ==== wrapper stderr END ====
[2026-03-08 23:15:08]  *** Error codes and diagnostics ***
[2026-03-08 23:15:08]     "exeErrorCode": 0,
[2026-03-08 23:15:08]     "exeErrorDiag": "",
[2026-03-08 23:15:08]     "pilotErrorCode": 0,
[2026-03-08 23:15:08]     "pilotErrorDiag": "",
[2026-03-08 23:15:08]  *** Listing of results directory ***
[2026-03-08 23:15:08] total 335356
[2026-03-08 23:15:08] -rwx------. 1 boincer umatlas     36322 Feb 28 08:55 runpilot2-wrapper.sh
[2026-03-08 23:15:08] -rw-r--r--. 1 boincer umatlas    584627 Feb 28 08:58 pilot3.tar.gz
[2026-03-08 23:15:08] -rw-r--r--. 1 boincer umatlas      5111 Feb 28 08:58 queuedata.json
[2026-03-08 23:15:08] -rw-r--r--. 1 boincer umatlas       100 Mar  8 16:43 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-08 23:15:08] -rwxr-xr-x. 1 boincer umatlas      7986 Mar  8 16:43 run_atlas
[2026-03-08 23:15:08] -rw-r--r--. 1 boincer umatlas       105 Mar  8 16:43 job.xml
[2026-03-08 23:15:08] -rw-r--r--. 2 boincer umatlas 187877956 Mar  8 16:43 EVNT.48700920._000056.pool.root.1
[2026-03-08 23:15:08] -rw-r--r--. 2 boincer umatlas     15845 Mar  8 16:43 start_atlas.sh
[2026-03-08 23:15:08] drwxrwx--x. 2 boincer umatlas      4096 Mar  8 16:43 shared
[2026-03-08 23:15:08] -rw-r--r--. 2 boincer umatlas    597931 Mar  8 16:43 input.tar.gz
[2026-03-08 23:15:08] -rw-r--r--. 1 boincer umatlas         0 Mar  8 16:43 boinc_lockfile
[2026-03-08 23:15:08] -rw-r--r--. 1 boincer umatlas      2516 Mar  8 16:43 pandaJob.out
[2026-03-08 23:15:08] -rw-------. 1 boincer umatlas        57 Mar  8 16:43 setup.sh.local
[2026-03-08 23:15:08] -rw-------. 1 boincer umatlas    999108 Mar  8 16:43 agis_schedconf.cvmfs.json
[2026-03-08 23:15:08] -rw-------. 1 boincer umatlas       442 Mar  8 16:44 workernode_map.json
[2026-03-08 23:15:08] drwx------. 5 boincer umatlas      4096 Mar  8 16:44 pilot3
[2026-03-08 23:15:08] -rw-r--r--. 1 boincer umatlas      6842 Mar  8 23:11 init_data.xml
[2026-03-08 23:15:08] -rw-------. 1 boincer umatlas 144486516 Mar  8 23:12 HITS.48700922._001400.pool.root.1
[2026-03-08 23:15:08] -rw-r--r--. 1 boincer umatlas       530 Mar  8 23:12 boinc_task_state.xml
[2026-03-08 23:15:08] -rw-------. 1 boincer umatlas      1037 Mar  8 23:13 memory_monitor_summary.json
[2026-03-08 23:15:08] -rw-------. 1 boincer umatlas        95 Mar  8 23:14 pilot_heartbeat.json
[2026-03-08 23:15:08] -rw-------. 1 boincer umatlas   1511578 Mar  8 23:14 agis_ddmendpoints.agis.ALL.json
[2026-03-08 23:15:08] -rw-------. 1 boincer umatlas    597291 Mar  8 23:14 log.48700922._001400.job.log.tgz.1
[2026-03-08 23:15:08] -rw-------. 1 boincer umatlas      6389 Mar  8 23:14 heartbeat.json
[2026-03-08 23:15:08] -rw-r--r--. 1 boincer umatlas        28 Mar  8 23:14 wrapper_checkpoint.txt
[2026-03-08 23:15:08] -rw-------. 1 boincer umatlas      4819 Mar  8 23:15 pilotlog.txt
[2026-03-08 23:15:08] -rw-r--r--. 1 boincer umatlas      8192 Mar  8 23:15 boinc_mmap_file
[2026-03-08 23:15:08] -rw-------. 1 boincer umatlas   2956520 Mar  8 23:15 log.48700922._001400.job.log.1
[2026-03-08 23:15:08] -rw-------. 1 boincer umatlas       357 Mar  8 23:15 output.list
[2026-03-08 23:15:08] -rw-r--r--. 1 boincer umatlas       620 Mar  8 23:15 runtime_log
[2026-03-08 23:15:08] -rw-------. 1 boincer umatlas   3573760 Mar  8 23:15 result.tar.gz
[2026-03-08 23:15:08] -rw-r--r--. 1 boincer umatlas      9347 Mar  8 23:15 runtime_log.err
[2026-03-08 23:15:08] -rw-------. 1 boincer umatlas       656 Mar  8 23:15 1y8KDmwxZG9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmZT7KDmbQAmGm.diag
[2026-03-08 23:15:08] -rw-r--r--. 1 boincer umatlas     21254 Mar  8 23:15 stderr.txt
[2026-03-08 23:15:28] HITS file was successfully produced:
[2026-03-08 23:15:28] -rw-------. 1 boincer umatlas 144486516 Mar  8 23:12 shared/HITS.pool.root.1
[2026-03-08 23:15:28]  *** Contents of shared directory: ***
[2026-03-08 23:15:28] total 328676
[2026-03-08 23:15:28] -rw-r--r--. 2 boincer umatlas 187877956 Mar  8 16:43 ATLAS.root_0
[2026-03-08 23:15:28] -rw-r--r--. 2 boincer umatlas     15845 Mar  8 16:43 start_atlas.sh
[2026-03-08 23:15:28] -rw-r--r--. 2 boincer umatlas    597931 Mar  8 16:43 input.tar.gz
[2026-03-08 23:15:28] -rw-------. 1 boincer umatlas 144486516 Mar  8 23:12 HITS.pool.root.1
[2026-03-08 23:15:28] -rw-------. 1 boincer umatlas   3573760 Mar  8 23:15 result.tar.gz
23:15:30 (717730): run_atlas exited; CPU time 32732.457118
23:15:30 (717730): called boinc_finish(0)

</stderr_txt>
]]>

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