Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:36:12 (2761325): wrapper (7.7.26015): starting
12:36:12 (2761325): wrapper: running run_atlas (--nthreads 4)
[2026-03-09 12:36:12] Arguments: --nthreads 4
[2026-03-09 12:36:12] Threads: 4
[2026-03-09 12:36:12] Checking for CVMFS
[2026-03-09 12:36:12] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-09 12:36:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-09 12:36:13] Running cvmfs_config stat atlas.cern.ch
[2026-03-09 12:36:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-09 12:36:13] 2.9.2.0 3074 15490 104052 157075 3 49 28733368 36864001 0 130560 0 6963285 99.985 577756 13185 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-09 12:36:13] CVMFS is ok
[2026-03-09 12:36:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-09 12:36:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-09 12:36:13] Further information can be found at the LHC@home message board.
[2026-03-09 12:36:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-09 12:36:13] Checking for apptainer binary...
[2026-03-09 12:36:13] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-09 12:36:13] Running /usr/bin/apptainer --version
[2026-03-09 12:36:13] apptainer version 1.4.1-1.1
[2026-03-09 12:36:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-09 12:36:13] thA314
[2026-03-09 12:36:13] apptainer works
[2026-03-09 12:36:13] Set ATHENA_PROC_NUMBER=4
[2026-03-09 12:36:13] Set ATHENA_CORE_NUMBER=4
[2026-03-09 12:36:13] Starting ATLAS job with PandaID=7039979921
[2026-03-09 12:36:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-09 13:46:36]  *** The last 200 lines of the pilot log: ***
[2026-03-09 13:46:36] 2026-03-09 12:46:09,338 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-09 13:46:36] 2026-03-09 12:46:09,338 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-09 13:46:36] 2026-03-09 12:46:09,338 | INFO     | job 7039979921 has completed (purged errors)
[2026-03-09 13:46:36] 2026-03-09 12:46:09,338 | INFO     | overall cleanup function is called
[2026-03-09 13:46:36] 2026-03-09 12:46:10,344 | INFO     | --- collectZombieJob: --- 10, [2769962]
[2026-03-09 13:46:36] 2026-03-09 12:46:10,344 | INFO     | zombie collector waiting for pid 2769962
[2026-03-09 13:46:36] 2026-03-09 12:46:10,344 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-09 13:46:36] 2026-03-09 12:46:10,345 | INFO     | collected zombie processes
[2026-03-09 13:46:36] 2026-03-09 12:46:10,345 | INFO     | will attempt to kill all subprocesses of pid=2769962
[2026-03-09 13:46:36] 2026-03-09 12:46:10,386 | WARNING  | process 2769962 can no longer be monitored (due to stat problems) - aborting
[2026-03-09 13:46:36] 2026-03-09 12:46:10,438 | INFO     | process IDs to be killed: [2769962] (in reverse order)
[2026-03-09 13:46:36] 2026-03-09 12:46:10,459 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 13:46:36] 2026-03-09 12:46:10,460 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 13:46:36] 2026-03-09 12:46:10,460 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-09 13:46:36] 2026-03-09 12:46:10,460 | WARNING  | maxPSS not found in memory monitor output
[2026-03-09 13:46:36] 2026-03-09 12:46:10,460 | INFO     | skipping file size check of payload stdout file (/local/data/boinc/slots/0/PanDA_Pilot-7039979921/payload.stdout) since it has not been created yet
[2026-03-09 13:46:36] 2026-03-09 12:46:10,460 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-09 13:46:36] 2026-03-09 12:46:10,476 | INFO     | sufficient remaining disk space (227100590080 B)
[2026-03-09 13:46:36] 2026-03-09 12:46:10,477 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-03-09 13:46:36] 2026-03-09 12:46:10,477 | INFO     | output file size check: skipping output file /local/data/boinc/slots/0/PanDA_Pilot-7039979921/HITS.48955010._015178.pool.root.1 since it does not exist
[2026-03-09 13:46:36] 2026-03-09 12:46:10,478 | WARNING  | found no corresponding commands to process id(s)
[2026-03-09 13:46:36] 2026-03-09 12:46:10,479 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-09 13:46:36] 2026-03-09 12:46:10,483 | INFO     | did not find any defunct processes belonging to 2769962
[2026-03-09 13:46:36] 2026-03-09 12:46:10,488 | INFO     | did not find any defunct processes belonging to 2769962
[2026-03-09 13:46:36] 2026-03-09 12:46:10,488 | INFO     | ready for new job
[2026-03-09 13:46:36] 2026-03-09 12:46:10,488 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-09 13:46:36] 2026-03-09 12:46:10,488 | INFO     | **************************************
[2026-03-09 13:46:36] 2026-03-09 12:46:10,489 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-09 13:46:36] 2026-03-09 12:46:10,489 | INFO     | **************************************
[2026-03-09 13:46:36] 2026-03-09 12:46:10,489 | INFO     | 
[2026-03-09 13:46:36] 2026-03-09 12:46:10,489 | INFO     | architecture information:
[2026-03-09 13:46:36] 2026-03-09 12:46:10,489 | INFO     | executing command: cat /etc/os-release
[2026-03-09 13:46:36] 2026-03-09 12:46:10,505 | INFO     | cat /etc/os-release:
[2026-03-09 13:46:36] NAME="CentOS Linux"
[2026-03-09 13:46:36] VERSION="7 (Core)"
[2026-03-09 13:46:36] ID="centos"
[2026-03-09 13:46:36] ID_LIKE="rhel fedora"
[2026-03-09 13:46:36] VERSION_ID="7"
[2026-03-09 13:46:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-09 13:46:36] ANSI_COLOR="0;31"
[2026-03-09 13:46:36] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-09 13:46:36] HOME_URL="https://www.centos.org/"
[2026-03-09 13:46:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-09 13:46:36] 
[2026-03-09 13:46:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-09 13:46:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-09 13:46:36] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-09 13:46:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-09 13:46:36] 
[2026-03-09 13:46:36] 2026-03-09 12:46:10,505 | INFO     | **************************************
[2026-03-09 13:46:36] 2026-03-09 12:46:10,542 | INFO     | number of running child processes to parent process 2769962: 1
[2026-03-09 13:46:36] 2026-03-09 12:46:10,542 | INFO     | maximum number of monitored processes: 6
[2026-03-09 13:46:36] 2026-03-09 12:46:10,542 | INFO     | aborting job monitoring since job object (job id=7039979921) has expired
[2026-03-09 13:46:36] 2026-03-09 12:46:11,009 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-09 13:46:36] 2026-03-09 12:46:11,026 | INFO     | sufficient remaining disk space (227101638656 B)
[2026-03-09 13:46:36] 2026-03-09 12:46:11,026 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-09 13:46:36] 2026-03-09 12:46:11,026 | INFO     | current server update state: UPDATING_FINAL
[2026-03-09 13:46:36] 2026-03-09 12:46:11,026 | INFO     | update_server=False
[2026-03-09 13:46:36] 2026-03-09 12:46:11,026 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-09 13:46:36] 2026-03-09 12:46:11,027 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-09 13:46:36] 2026-03-09 12:46:11,027 | INFO     | found 0 job(s) in 20 queues
[2026-03-09 13:46:36] 2026-03-09 12:46:11,027 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-09 13:46:36] 2026-03-09 12:46:11,027 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-09 13:46:36] 2026-03-09 12:46:11,027 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-09 13:46:36] 2026-03-09 12:46:11,027 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-09 13:46:36] 2026-03-09 12:46:11,027 | INFO     | will abort loop
[2026-03-09 13:46:36] 2026-03-09 12:46:11,775 | INFO     | all data control threads have been joined
[2026-03-09 13:46:36] 2026-03-09 12:46:11,865 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-09 13:46:36] 2026-03-09 12:46:11,882 | INFO     | all job control threads have been joined
[2026-03-09 13:46:36] 2026-03-09 12:46:12,032 | INFO     | [job] retrieve thread has finished
[2026-03-09 13:46:36] 2026-03-09 12:46:12,032 | INFO     | [job] queue monitor thread has finished
[2026-03-09 13:46:36] 2026-03-09 12:46:12,033 | INFO     | [job] job monitor thread has finished
[2026-03-09 13:46:36] 2026-03-09 12:46:12,403 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-09 13:46:36] 2026-03-09 12:46:12,485 | INFO     | all payload control threads have been joined
[2026-03-09 13:46:36] 2026-03-09 12:46:12,753 | INFO     | [payload] execute_payloads thread has finished
[2026-03-09 13:46:36] 2026-03-09 12:46:12,753 | INFO     | [job] validate thread has finished
[2026-03-09 13:46:36] 2026-03-09 12:46:12,781 | INFO     | [data] control thread has finished
[2026-03-09 13:46:36] 2026-03-09 12:46:12,869 | INFO     | [job] create_data_payload thread has finished
[2026-03-09 13:46:36] 2026-03-09 12:46:12,888 | INFO     | [job] control thread has finished
[2026-03-09 13:46:36] 2026-03-09 12:46:12,910 | INFO     | [payload] validate_pre thread has finished
[2026-03-09 13:46:36] 2026-03-09 12:46:13,137 | INFO     | [data] copytool_in thread has finished
[2026-03-09 13:46:36] 2026-03-09 12:46:13,183 | INFO     | [payload] validate_post thread has finished
[2026-03-09 13:46:36] 2026-03-09 12:46:13,289 | INFO     | [payload] failed_post thread has finished
[2026-03-09 13:46:36] 2026-03-09 12:46:13,491 | INFO     | [payload] control thread has finished
[2026-03-09 13:46:36] 2026-03-09 12:46:13,872 | INFO     | [data] copytool_out thread has finished
[2026-03-09 13:46:36] 2026-03-09 12:46:16,410 | INFO     | [data] queue_monitor thread has finished
[2026-03-09 13:46:36] 2026-03-09 12:46:22,004 | INFO     | job.realtimelogging is not enabled
[2026-03-09 13:46:36] 2026-03-09 12:46:23,010 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-09 13:46:36] 2026-03-09 12:46:29,963 | INFO     | [monitor] cgroup control has ended
[2026-03-09 13:46:36] 2026-03-09 12:46:31,275 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140448569321280)>', '<ExcThread(monitor, started 140447628384000)>']
[2026-03-09 13:46:36] 2026-03-09 12:46:32,135 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-09 13:46:36] 2026-03-09 12:46:32,136 | INFO     | [monitor] control thread has ended
[2026-03-09 13:46:36] 2026-03-09 12:46:36,286 | INFO     | all workflow threads have been joined
[2026-03-09 13:46:36] 2026-03-09 12:46:36,287 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-09 13:46:36] 2026-03-09 12:46:36,287 | INFO     | traces error code: 0
[2026-03-09 13:46:36] 2026-03-09 12:46:36,287 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-09 13:46:36] 2026-03-09 12:46:36,368 [wrapper] ==== pilot stdout END ====
[2026-03-09 13:46:36] 2026-03-09 12:46:36,373 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-09 13:46:36] 2026-03-09 12:46:36,377 [wrapper] pilotpid: 2765436
[2026-03-09 13:46:36] 2026-03-09 12:46:36,381 [wrapper] Pilot exit status: 0
[2026-03-09 13:46:36] 2026-03-09 12:46:36,393 [wrapper] pandaids: 7039979921
[2026-03-09 13:46:36] 2026-03-09 12:46:36,417 [wrapper] cleanup supervisor_pilot 2777504 2765437
[2026-03-09 13:46:36] 2026-03-09 12:46:36,421 [wrapper] Test setup, not cleaning
[2026-03-09 13:46:36] 2026-03-09 12:46:36,425 [wrapper] apfmon messages muted
[2026-03-09 13:46:36] 2026-03-09 12:46:36,429 [wrapper] ==== wrapper stdout END ====
[2026-03-09 13:46:36] 2026-03-09 12:46:36,432 [wrapper] ==== wrapper stderr END ====
[2026-03-09 13:46:36]  *** Error codes and diagnostics ***
[2026-03-09 13:46:36]     "exeErrorCode": 0,
[2026-03-09 13:46:36]     "exeErrorDiag": "",
[2026-03-09 13:46:36]     "pilotErrorCode": 0,
[2026-03-09 13:46:36]     "pilotErrorDiag": "",
[2026-03-09 13:46:36]  *** Listing of results directory ***
[2026-03-09 13:46:36] total 615756
[2026-03-09 13:46:36] -rw-r--r-- 1 boinc boinc    584627 Mar  8 16:35 pilot3.tar.gz
[2026-03-09 13:46:36] -rwx------ 1 boinc boinc     36322 Mar  8 16:38 runpilot2-wrapper.sh
[2026-03-09 13:46:36] -rw-r--r-- 1 boinc boinc      5111 Mar  8 16:40 queuedata.json
[2026-03-09 13:46:36] -rw-r--r-- 1 boinc boinc       100 Mar  9 12:36 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-09 13:46:36] -rwxr-xr-x 1 boinc boinc      7986 Mar  9 12:36 run_atlas
[2026-03-09 13:46:36] -rw-r--r-- 1 boinc boinc       105 Mar  9 12:36 job.xml
[2026-03-09 13:46:36] -rw-r--r-- 2 boinc boinc 436537057 Mar  9 12:36 EVNT.46701403._001304.pool.root.1
[2026-03-09 13:46:36] -rw-r--r-- 2 boinc boinc    597953 Mar  9 12:36 input.tar.gz
[2026-03-09 13:46:36] -rw-r--r-- 2 boinc boinc     15845 Mar  9 12:36 start_atlas.sh
[2026-03-09 13:46:36] drwxrwx--x 2 boinc boinc      4096 Mar  9 12:36 shared
[2026-03-09 13:46:36] -rw-r--r-- 1 boinc boinc         0 Mar  9 12:36 boinc_setup_complete
[2026-03-09 13:46:36] -rw-r--r-- 1 boinc boinc      6376 Mar  9 12:36 init_data.xml
[2026-03-09 13:46:36] -rw-r--r-- 1 boinc boinc         0 Mar  9 12:36 boinc_lockfile
[2026-03-09 13:46:36] -rw-r--r-- 1 boinc boinc      2562 Mar  9 12:36 pandaJob.out
[2026-03-09 13:46:36] -rw------- 1 boinc boinc    990710 Mar  9 12:36 agis_schedconf.cvmfs.json
[2026-03-09 13:46:36] -rw------- 1 boinc boinc   1511578 Mar  9 12:36 agis_ddmendpoints.agis.ALL.json
[2026-03-09 13:46:36] -rw------- 1 boinc boinc       427 Mar  9 12:36 workernode_map.json
[2026-03-09 13:46:36] drwx------ 5 boinc boinc      4096 Mar  9 12:36 pilot3
[2026-03-09 13:46:36] -rw------- 1 boinc boinc        95 Mar  9 13:45 pilot_heartbeat.json
[2026-03-09 13:46:36] -rw------- 1 boinc boinc 188334470 Mar  9 13:45 HITS.48955010._015178.pool.root.1
[2026-03-09 13:46:36] -rw-r--r-- 1 boinc boinc       530 Mar  9 13:45 boinc_task_state.xml
[2026-03-09 13:46:36] -rw------- 1 boinc boinc      1022 Mar  9 13:46 memory_monitor_summary.json
[2026-03-09 13:46:36] -rw------- 1 boinc boinc    251129 Mar  9 13:46 log.48955010._015178.job.log.tgz.1
[2026-03-09 13:46:36] -rw------- 1 boinc boinc      6323 Mar  9 13:46 heartbeat.json
[2026-03-09 13:46:36] -rw-r--r-- 1 boinc boinc      8192 Mar  9 13:46 boinc_mmap_file
[2026-03-09 13:46:36] -rw-r--r-- 1 boinc boinc        27 Mar  9 13:46 wrapper_checkpoint.txt
[2026-03-09 13:46:36] -rw------- 1 boinc boinc      4914 Mar  9 13:46 pilotlog.txt
[2026-03-09 13:46:36] -rw------- 1 boinc boinc    621306 Mar  9 13:46 log.48955010._015178.job.log.1
[2026-03-09 13:46:36] -rw------- 1 boinc boinc       357 Mar  9 13:46 output.list
[2026-03-09 13:46:36] -rw-r--r-- 1 boinc boinc       620 Mar  9 13:46 runtime_log
[2026-03-09 13:46:36] -rw------- 1 boinc boinc    890880 Mar  9 13:46 result.tar.gz
[2026-03-09 13:46:36] -rw-r--r-- 1 boinc boinc      8896 Mar  9 13:46 runtime_log.err
[2026-03-09 13:46:36] -rw------- 1 boinc boinc       657 Mar  9 13:46 XhELDmSOVJ9n9Rq4apOajLDm4fhM0noT9bVooX4SDm29WLDmtJ0Eun.diag
[2026-03-09 13:46:36] -rw-r--r-- 1 boinc boinc     12815 Mar  9 13:46 stderr.txt
[2026-03-09 13:46:36] HITS file was successfully produced:
[2026-03-09 13:46:36] -rw------- 1 boinc boinc 188334470 Mar  9 13:45 shared/HITS.pool.root.1
[2026-03-09 13:46:36]  *** Contents of shared directory: ***
[2026-03-09 13:46:36] total 611712
[2026-03-09 13:46:36] -rw-r--r-- 2 boinc boinc 436537057 Mar  9 12:36 ATLAS.root_0
[2026-03-09 13:46:36] -rw-r--r-- 2 boinc boinc    597953 Mar  9 12:36 input.tar.gz
[2026-03-09 13:46:36] -rw-r--r-- 2 boinc boinc     15845 Mar  9 12:36 start_atlas.sh
[2026-03-09 13:46:36] -rw------- 1 boinc boinc 188334470 Mar  9 13:45 HITS.pool.root.1
[2026-03-09 13:46:36] -rw------- 1 boinc boinc    890880 Mar  9 13:46 result.tar.gz
13:46:59 (2761325): run_atlas exited; CPU time 15659.067724
13:46:59 (2761325): called boinc_finish(0)

</stderr_txt>
]]>

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