Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:56:00 (33346): wrapper (7.7.26015): starting
15:56:00 (33346): wrapper: running run_atlas (--nthreads 3)
[2026-03-09 15:56:00] Arguments: --nthreads 3
[2026-03-09 15:56:00] Threads: 3
[2026-03-09 15:56:00] Checking for CVMFS
[2026-03-09 15:56:01] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-09 15:56:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-09 15:56:01] Running cvmfs_config stat atlas.cern.ch
[2026-03-09 15:56:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-09 15:56:01] 2.9.2.0 7633 81 49336 157079 3 50 29869730 36864001 0 130560 0 34690 99.992 2753 20544 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-09 15:56:01] CVMFS is ok
[2026-03-09 15:56:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-09 15:56:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-09 15:56:01] Further information can be found at the LHC@home message board.
[2026-03-09 15:56:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-09 15:56:01] Checking for apptainer binary...
[2026-03-09 15:56:01] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-09 15:56:01] Running /usr/bin/apptainer --version
[2026-03-09 15:56:01] apptainer version 1.4.1-1.1
[2026-03-09 15:56:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-09 15:56:01] atlasA230
[2026-03-09 15:56:01] apptainer works
[2026-03-09 15:56:01] Set ATHENA_PROC_NUMBER=3
[2026-03-09 15:56:01] Set ATHENA_CORE_NUMBER=3
[2026-03-09 15:56:01] Starting ATLAS job with PandaID=7033525206
[2026-03-09 15:56:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
16:12:35 (47614): wrapper (7.7.26015): starting
16:12:35 (47614): wrapper: running run_atlas (--nthreads 3)
[2026-03-09 16:12:35] Arguments: --nthreads 3
[2026-03-09 16:12:35] Threads: 3
[2026-03-09 16:12:35] This job has been restarted, cleaning up previous attempt
[2026-03-09 16:12:35] Checking for CVMFS
[2026-03-09 16:12:36] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-09 16:12:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-09 16:12:36] Running cvmfs_config stat atlas.cern.ch
[2026-03-09 16:12:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-09 16:12:36] 2.9.2.0 47741 0 30056 157080 4 1 29876285 36864000 0 130560 0 0 100.000 0 0 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-09 16:12:36] CVMFS is ok
[2026-03-09 16:12:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-09 16:12:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-09 16:12:36] Further information can be found at the LHC@home message board.
[2026-03-09 16:12:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-09 16:12:36] Checking for apptainer binary...
[2026-03-09 16:12:36] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-09 16:12:36] Running /usr/bin/apptainer --version
[2026-03-09 16:12:36] apptainer version 1.4.1-1.1
[2026-03-09 16:12:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-09 16:12:36] atlasA230
[2026-03-09 16:12:36] apptainer works
[2026-03-09 16:12:36] Set ATHENA_PROC_NUMBER=3
[2026-03-09 16:12:36] Set ATHENA_CORE_NUMBER=3
[2026-03-09 16:12:36] Starting ATLAS job with PandaID=7033525206
[2026-03-09 16:12:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-09 17:49:58]  *** The last 200 lines of the pilot log: ***
[2026-03-09 17:49:58] 2026-03-09 16:49:07,472 | INFO     | ready for new job
[2026-03-09 17:49:58] 2026-03-09 16:49:07,472 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-09 17:49:58] 2026-03-09 16:49:07,472 | INFO     | **************************************
[2026-03-09 17:49:58] 2026-03-09 16:49:07,472 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-09 17:49:58] 2026-03-09 16:49:07,472 | INFO     | **************************************
[2026-03-09 17:49:58] 2026-03-09 16:49:07,472 | INFO     | 
[2026-03-09 17:49:58] 2026-03-09 16:49:07,473 | INFO     | architecture information:
[2026-03-09 17:49:58] 2026-03-09 16:49:07,473 | INFO     | executing command: cat /etc/os-release
[2026-03-09 17:49:58] 2026-03-09 16:49:07,481 | INFO     | cat /etc/os-release:
[2026-03-09 17:49:58] NAME="CentOS Linux"
[2026-03-09 17:49:58] VERSION="7 (Core)"
[2026-03-09 17:49:58] ID="centos"
[2026-03-09 17:49:58] ID_LIKE="rhel fedora"
[2026-03-09 17:49:58] VERSION_ID="7"
[2026-03-09 17:49:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-09 17:49:58] ANSI_COLOR="0;31"
[2026-03-09 17:49:58] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-09 17:49:58] HOME_URL="https://www.centos.org/"
[2026-03-09 17:49:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-09 17:49:58] 
[2026-03-09 17:49:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-09 17:49:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-09 17:49:58] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-09 17:49:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-09 17:49:58] 
[2026-03-09 17:49:58] 2026-03-09 16:49:07,481 | INFO     | **************************************
[2026-03-09 17:49:58] 2026-03-09 16:49:07,984 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-09 17:49:58] 2026-03-09 16:49:07,997 | INFO     | sufficient remaining disk space (329054683136 B)
[2026-03-09 17:49:58] 2026-03-09 16:49:07,997 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-09 17:49:58] 2026-03-09 16:49:07,997 | INFO     | current server update state: UPDATING_FINAL
[2026-03-09 17:49:58] 2026-03-09 16:49:07,997 | INFO     | update_server=False
[2026-03-09 17:49:58] 2026-03-09 16:49:07,997 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-09 17:49:58] 2026-03-09 16:49:07,998 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-09 17:49:58] 2026-03-09 16:49:07,998 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-09 17:49:58] 2026-03-09 16:49:07,998 | INFO     | aborting loop
[2026-03-09 17:49:58] 2026-03-09 16:49:08,067 | INFO     | all job control threads have been joined
[2026-03-09 17:49:58] 2026-03-09 16:49:08,569 | INFO     | all data control threads have been joined
[2026-03-09 17:49:58] 2026-03-09 16:49:08,717 | INFO     | all payload control threads have been joined
[2026-03-09 17:49:58] 2026-03-09 16:49:09,002 | INFO     | [job] job monitor thread has finished
[2026-03-09 17:49:58] 2026-03-09 16:49:09,003 | INFO     | [job] retrieve thread has finished
[2026-03-09 17:49:58] 2026-03-09 16:49:09,010 | INFO     | [payload] validate_pre thread has finished
[2026-03-09 17:49:58] 2026-03-09 16:49:09,065 | INFO     | [payload] execute_payloads thread has finished
[2026-03-09 17:49:58] 2026-03-09 16:49:09,073 | INFO     | [job] control thread has finished
[2026-03-09 17:49:58] 2026-03-09 16:49:09,167 | INFO     | [data] copytool_in thread has finished
[2026-03-09 17:49:58] 2026-03-09 16:49:09,392 | INFO     | [payload] validate_post thread has finished
[2026-03-09 17:49:58] 2026-03-09 16:49:09,575 | INFO     | [data] control thread has finished
[2026-03-09 17:49:58] 2026-03-09 16:49:09,633 | INFO     | job.realtimelogging is not enabled
[2026-03-09 17:49:58] 2026-03-09 16:49:09,721 | INFO     | [payload] control thread has finished
[2026-03-09 17:49:58] 2026-03-09 16:49:10,004 | INFO     | [data] copytool_out thread has finished
[2026-03-09 17:49:58] 2026-03-09 16:49:10,385 | INFO     | [job] validate thread has finished
[2026-03-09 17:49:58] 2026-03-09 16:49:10,385 | INFO     | [job] create_data_payload thread has finished
[2026-03-09 17:49:58] 2026-03-09 16:49:10,414 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-09 17:49:58] 2026-03-09 16:49:10,426 | INFO     | [payload] failed_post thread has finished
[2026-03-09 17:49:58] 2026-03-09 16:49:10,638 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-09 17:49:58] 2026-03-09 16:49:10,966 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-09 17:49:58] 2026-03-09 16:49:11,972 | INFO     | [job] queue monitor thread has finished
[2026-03-09 17:49:58] 2026-03-09 16:49:14,421 | INFO     | [data] queue_monitor thread has finished
[2026-03-09 17:49:58] 2026-03-09 16:49:37,711 | INFO     | PID=51819 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-09 17:49:58] 2026-03-09 16:49:37,711 | INFO     | found 0 job(s) in 20 queues
[2026-03-09 17:49:58] 2026-03-09 16:49:37,711 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-09 17:49:58] 2026-03-09 16:49:37,711 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-09 17:49:58] 2026-03-09 16:49:51,218 | INFO     | [monitor] cgroup control has ended
[2026-03-09 17:49:58] 2026-03-09 16:49:52,854 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139903790073664)>', '<ExcThread(monitor, started 139903308388096)>']
[2026-03-09 17:49:58] 2026-03-09 16:49:53,789 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-09 17:49:58] 2026-03-09 16:49:53,789 | INFO     | [monitor] control thread has ended
[2026-03-09 17:49:58] 2026-03-09 16:49:57,879 | INFO     | all workflow threads have been joined
[2026-03-09 17:49:58] 2026-03-09 16:49:57,880 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-09 17:49:58] 2026-03-09 16:49:57,880 | INFO     | traces error code: 0
[2026-03-09 17:49:58] 2026-03-09 16:49:57,880 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-09 17:49:58] 2026-03-09 16:49:57,928 [wrapper] ==== pilot stdout END ====
[2026-03-09 17:49:58] 2026-03-09 16:49:57,930 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-09 17:49:58] 2026-03-09 16:49:57,932 [wrapper] pilotpid: 51819
[2026-03-09 17:49:58] 2026-03-09 16:49:57,935 [wrapper] Pilot exit status: 0
[2026-03-09 17:49:58] 2026-03-09 16:49:57,942 [wrapper] pandaids: 7033525206 7033525206
[2026-03-09 17:49:58] 2026-03-09 16:49:57,960 [wrapper] cleanup supervisor_pilot   59687 51820
[2026-03-09 17:49:58] 2026-03-09 16:49:57,962 [wrapper] Test setup, not cleaning
[2026-03-09 17:49:58] 2026-03-09 16:49:57,964 [wrapper] apfmon messages muted
[2026-03-09 17:49:58] 2026-03-09 16:49:57,967 [wrapper] ==== wrapper stdout END ====
[2026-03-09 17:49:58] 2026-03-09 16:49:57,969 [wrapper] ==== wrapper stderr END ====
[2026-03-09 17:49:58]  *** Error codes and diagnostics ***
[2026-03-09 17:49:58]     "exeErrorCode": 0,
[2026-03-09 17:49:58]     "exeErrorDiag": "",
[2026-03-09 17:49:58]     "pilotErrorCode": 0,
[2026-03-09 17:49:58]     "pilotErrorDiag": "",
[2026-03-09 17:49:58]  *** Listing of results directory ***
[2026-03-09 17:49:58] total 787696
[2026-03-09 17:49:58] drwx------ 5 boinc boinc      4096 Feb  2 16:00 pilot3
[2026-03-09 17:49:58] -rw-r--r-- 1 boinc boinc    584627 Feb 28 16:58 pilot3.tar.gz
[2026-03-09 17:49:58] -rwx------ 1 boinc boinc     36322 Feb 28 16:58 runpilot2-wrapper.sh
[2026-03-09 17:49:58] -rw-r--r-- 1 boinc boinc      5111 Feb 28 16:58 queuedata.json
[2026-03-09 17:49:58] -rw-r--r-- 1 boinc boinc       100 Mar  9 15:56 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-09 17:49:58] -rwxr-xr-x 1 boinc boinc      7986 Mar  9 15:56 run_atlas
[2026-03-09 17:49:58] -rw-r--r-- 1 boinc boinc       105 Mar  9 15:56 job.xml
[2026-03-09 17:49:58] -rw-r--r-- 3 boinc boinc 290558511 Mar  9 15:56 EVNT.48220101._000165.pool.root.1
[2026-03-09 17:49:58] -rw-r--r-- 3 boinc boinc 290558511 Mar  9 15:56 ATLAS.root_0
[2026-03-09 17:49:58] drwxrwx--x 2 boinc boinc      4096 Mar  9 15:56 shared
[2026-03-09 17:49:58] -rw-r--r-- 2 boinc boinc    597977 Mar  9 15:56 input.tar.gz
[2026-03-09 17:49:58] -rw-r--r-- 2 boinc boinc     15845 Mar  9 15:56 start_atlas.sh
[2026-03-09 17:49:58] -rw-r--r-- 1 boinc boinc         0 Mar  9 15:56 boinc_setup_complete
[2026-03-09 17:49:58] -rw-r--r-- 1 boinc boinc         0 Mar  9 15:56 boinc_lockfile
[2026-03-09 17:49:58] -rw------- 1 boinc boinc   1511578 Mar  9 15:56 agis_ddmendpoints.agis.ALL.json
[2026-03-09 17:49:58] -rw-r--r-- 1 boinc boinc      6443 Mar  9 16:12 init_data.xml
[2026-03-09 17:49:58] -rw-r--r-- 1 boinc boinc      2580 Mar  9 16:12 pandaJob.out
[2026-03-09 17:49:58] -rw------- 1 boinc boinc    990760 Mar  9 16:12 agis_schedconf.cvmfs.json
[2026-03-09 17:49:58] -rw------- 1 boinc boinc       430 Mar  9 16:12 workernode_map.json
[2026-03-09 17:49:58] -rw------- 1 boinc boinc 219343358 Mar  9 17:48 HITS.48838432._004334.pool.root.1
[2026-03-09 17:49:58] -rw-r--r-- 1 boinc boinc       531 Mar  9 17:48 boinc_task_state.xml
[2026-03-09 17:49:58] -rw------- 1 boinc boinc      1020 Mar  9 17:49 memory_monitor_summary.json
[2026-03-09 17:49:58] -rw------- 1 boinc boinc    275863 Mar  9 17:49 log.48838432._004334.job.log.tgz.1
[2026-03-09 17:49:58] -rw------- 1 boinc boinc      6317 Mar  9 17:49 heartbeat.json
[2026-03-09 17:49:58] -rw-r--r-- 1 boinc boinc        27 Mar  9 17:49 wrapper_checkpoint.txt
[2026-03-09 17:49:58] -rw------- 1 boinc boinc        96 Mar  9 17:49 pilot_heartbeat.json
[2026-03-09 17:49:58] -rw------- 1 boinc boinc      4818 Mar  9 17:49 pilotlog.txt
[2026-03-09 17:49:58] -rw-r--r-- 1 boinc boinc      8192 Mar  9 17:49 boinc_mmap_file
[2026-03-09 17:49:58] -rw------- 1 boinc boinc    836285 Mar  9 17:49 log.48838432._004334.job.log.1
[2026-03-09 17:49:58] -rw------- 1 boinc boinc       357 Mar  9 17:49 output.list
[2026-03-09 17:49:58] -rw-r--r-- 1 boinc boinc       620 Mar  9 17:49 runtime_log
[2026-03-09 17:49:58] -rw------- 1 boinc boinc   1126400 Mar  9 17:49 result.tar.gz
[2026-03-09 17:49:58] -rw-r--r-- 1 boinc boinc      8996 Mar  9 17:49 runtime_log.err
[2026-03-09 17:49:58] -rw------- 1 boinc boinc       785 Mar  9 17:49 mNGNDmWtbG9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmRW7KDmipARXn.diag
[2026-03-09 17:49:58] -rw-r--r-- 1 boinc boinc     11717 Mar  9 17:49 stderr.txt
[2026-03-09 17:49:58] HITS file was successfully produced:
[2026-03-09 17:49:58] -rw------- 1 boinc boinc 219343358 Mar  9 17:48 shared/HITS.pool.root.1
[2026-03-09 17:49:58]  *** Contents of shared directory: ***
[2026-03-09 17:49:58] total 499664
[2026-03-09 17:49:58] -rw-r--r-- 3 boinc boinc 290558511 Mar  9 15:56 ATLAS.root_0
[2026-03-09 17:49:58] -rw-r--r-- 2 boinc boinc    597977 Mar  9 15:56 input.tar.gz
[2026-03-09 17:49:58] -rw-r--r-- 2 boinc boinc     15845 Mar  9 15:56 start_atlas.sh
[2026-03-09 17:49:58] -rw------- 1 boinc boinc 219343358 Mar  9 17:48 HITS.pool.root.1
[2026-03-09 17:49:58] -rw------- 1 boinc boinc   1126400 Mar  9 17:49 result.tar.gz
17:49:59 (47614): run_atlas exited; CPU time 16591.195986
17:49:59 (47614): called boinc_finish(0)

</stderr_txt>
]]>

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