Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:28:40 (9909): wrapper (7.7.26015): starting
07:28:40 (9909): wrapper: running run_atlas (--nthreads 8)
[2026-03-09 07:28:40] Arguments: --nthreads 8
[2026-03-09 07:28:40] Threads: 8
[2026-03-09 07:28:40] Checking for CVMFS
[2026-03-09 07:28:41] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-09 07:28:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-09 07:28:42] Running cvmfs_config stat atlas.cern.ch
[2026-03-09 07:28:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-09 07:28:44] 2.11.2.0 29086 120015 139844 157067 2 94 18141088 25165824 1081 130560 160 36704680 99.790 31479900 1069 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-09 07:28:44] CVMFS is ok
[2026-03-09 07:28:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-09 07:28:44] Checking for apptainer binary...
[2026-03-09 07:28:44] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-09 07:28:44] Running /usr/bin/apptainer --version
[2026-03-09 07:28:44] apptainer version 1.3.2-1.el7
[2026-03-09 07:28:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-09 07:28:52] cg-vwn413.simple-grid.lan
[2026-03-09 07:28:52] apptainer works
[2026-03-09 07:28:52] Set ATHENA_PROC_NUMBER=8
[2026-03-09 07:28:52] Set ATHENA_CORE_NUMBER=8
[2026-03-09 07:28:52] Starting ATLAS job with PandaID=7040101813
[2026-03-09 07:28:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-09 09:49:32]  *** The last 200 lines of the pilot log: ***
[2026-03-09 09:49:32] 2026-03-09 08:48:32,683 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-09 09:49:32] 2026-03-09 08:48:32,683 | INFO     | log transfer has been attempted: DONE
[2026-03-09 09:49:32] 2026-03-09 08:48:32,683 | INFO     | job 7040101813 has finished - writing final server update
[2026-03-09 09:49:32] 2026-03-09 08:48:32,683 | INFO     | total number of processed events: 400 (read)
[2026-03-09 09:49:32] 2026-03-09 08:48:32,686 | INFO     | using path: /var/lib/boinc/slots/10/PanDA_Pilot-7040101813/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 09:49:32] 2026-03-09 08:48:32,686 | INFO     | extracted standard info from prmon json
[2026-03-09 09:49:32] 2026-03-09 08:48:32,686 | INFO     | extracted standard memory fields from prmon json
[2026-03-09 09:49:32] 2026-03-09 08:48:32,687 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-09 09:49:32] 2026-03-09 08:48:32,687 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-09 09:49:32] 2026-03-09 08:48:32,687 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-09 09:49:32] 2026-03-09 08:48:32,690 | INFO     | fitting pss+swap vs Time
[2026-03-09 09:49:32] 2026-03-09 08:48:32,691 | INFO     | sum of square deviations: 635130048.0
[2026-03-09 09:49:32] 2026-03-09 08:48:32,691 | INFO     | sum of deviations: 56453442469.99999
[2026-03-09 09:49:32] 2026-03-09 08:48:32,692 | INFO     | mean x: 1773042257.0
[2026-03-09 09:49:32] 2026-03-09 08:48:32,692 | INFO     | mean y: 2346373.3543307087
[2026-03-09 09:49:32] 2026-03-09 08:48:32,692 | INFO     | intersect: -157594258239.54605
[2026-03-09 09:49:32] 2026-03-09 08:48:32,692 | INFO     | chi2: 8.457542149273188
[2026-03-09 09:49:32] 2026-03-09 08:48:32,693 | INFO     | sum of square deviations: 563026370.5
[2026-03-09 09:49:32] 2026-03-09 08:48:32,693 | INFO     | sum of deviations: 62276887319.0
[2026-03-09 09:49:32] 2026-03-09 08:48:32,694 | INFO     | mean x: 1773042104.5
[2026-03-09 09:49:32] 2026-03-09 08:48:32,694 | INFO     | mean y: 2358123.180327869
[2026-03-09 09:49:32] 2026-03-09 08:48:32,694 | INFO     | intersect: -196115531089.94867
[2026-03-09 09:49:32] 2026-03-09 08:48:32,694 | INFO     | chi2: 7.810603316716865
[2026-03-09 09:49:32] 2026-03-09 08:48:32,694 | INFO     | current chi2=7.810603316716865 (change=7.649253425381023 %)
[2026-03-09 09:49:32] 2026-03-09 08:48:32,694 | INFO     | right removable region: 121
[2026-03-09 09:49:32] 2026-03-09 08:48:32,695 | INFO     | sum of square deviations: 563026370.5
[2026-03-09 09:49:32] 2026-03-09 08:48:32,696 | INFO     | sum of deviations: 14351459355.5
[2026-03-09 09:49:32] 2026-03-09 08:48:32,696 | INFO     | mean x: 1773042409.5
[2026-03-09 09:49:32] 2026-03-09 08:48:32,696 | INFO     | mean y: 2435304.0901639345
[2026-03-09 09:49:32] 2026-03-09 08:48:32,696 | INFO     | intersect: -45192154876.33023
[2026-03-09 09:49:32] 2026-03-09 08:48:32,696 | INFO     | chi2: 3.1549994733663334
[2026-03-09 09:49:32] 2026-03-09 08:48:32,696 | INFO     | current chi2=3.1549994733663334 (change=62.696024238703174 %)
[2026-03-09 09:49:32] 2026-03-09 08:48:32,697 | INFO     | sum of square deviations: 496597218.0
[2026-03-09 09:49:32] 2026-03-09 08:48:32,697 | INFO     | sum of deviations: -13390186921.0
[2026-03-09 09:49:32] 2026-03-09 08:48:32,698 | INFO     | mean x: 1773042562.0
[2026-03-09 09:49:32] 2026-03-09 08:48:32,698 | INFO     | mean y: 2498617.1965811965
[2026-03-09 09:49:32] 2026-03-09 08:48:32,698 | INFO     | intersect: 47810602375.17762
[2026-03-09 09:49:32] 2026-03-09 08:48:32,698 | INFO     | chi2: 0.9572030117573411
[2026-03-09 09:49:32] 2026-03-09 08:48:32,698 | INFO     | current chi2=0.9572030117573411 (change=69.66075526041146 %)
[2026-03-09 09:49:32] 2026-03-09 08:48:32,699 | INFO     | sum of square deviations: 435610028.0
[2026-03-09 09:49:32] 2026-03-09 08:48:32,699 | INFO     | sum of deviations: -16060747187.500004
[2026-03-09 09:49:32] 2026-03-09 08:48:32,699 | INFO     | mean x: 1773042714.5
[2026-03-09 09:49:32] 2026-03-09 08:48:32,700 | INFO     | mean y: 2505080.901785714
[2026-03-09 09:49:32] 2026-03-09 08:48:32,700 | INFO     | intersect: 65373798117.85466
[2026-03-09 09:49:32] 2026-03-09 08:48:32,700 | INFO     | chi2: 0.8876724452969846
[2026-03-09 09:49:32] 2026-03-09 08:48:32,700 | INFO     | current chi2=0.8876724452969846 (change=7.263931016337323 %)
[2026-03-09 09:49:32] 2026-03-09 08:48:32,700 | INFO     | left removable region: 30
[2026-03-09 09:49:32] 2026-03-09 08:48:32,700 | INFO     | sum of square deviations: 233641590.0
[2026-03-09 09:49:32] 2026-03-09 08:48:32,701 | INFO     | sum of deviations: 569917388.0000001
[2026-03-09 09:49:32] 2026-03-09 08:48:32,701 | INFO     | mean x: 1773042989.0
[2026-03-09 09:49:32] 2026-03-09 08:48:32,701 | INFO     | mean y: 2497395.032967033
[2026-03-09 09:49:32] 2026-03-09 08:48:32,701 | INFO     | intersect: -4322451896.326474
[2026-03-09 09:49:32] 2026-03-09 08:48:32,702 | INFO     | chi2: 8.295920856507362e-05
[2026-03-09 09:49:32] 2026-03-09 08:48:32,702 | INFO     | current memory leak: 2.44 B/s (using 91 data points, chi2=0.00)
[2026-03-09 09:49:32] 2026-03-09 08:48:32,703 | INFO     | could have reported an average CPU frequency of 1999 MHz (8 samples)
[2026-03-09 09:49:32] 2026-03-09 08:48:32,703 | INFO     | ..............................
[2026-03-09 09:49:32] 2026-03-09 08:48:32,703 | INFO     | . Timing measurements:
[2026-03-09 09:49:32] 2026-03-09 08:48:32,703 | INFO     | . get job = 0 s
[2026-03-09 09:49:32] 2026-03-09 08:48:32,703 | INFO     | . initial setup = 119 s
[2026-03-09 09:49:32] 2026-03-09 08:48:32,703 | INFO     | . payload setup = 151 s
[2026-03-09 09:49:32] 2026-03-09 08:48:32,704 | INFO     | . stage-in = 0 s
[2026-03-09 09:49:32] 2026-03-09 08:48:32,704 | INFO     | . payload execution = 7827 s
[2026-03-09 09:49:32] 2026-03-09 08:48:32,704 | INFO     | . stage-out = 1 s
[2026-03-09 09:49:32] 2026-03-09 08:48:32,704 | INFO     | . log creation = 0 s
[2026-03-09 09:49:32] 2026-03-09 08:48:32,704 | INFO     | ..............................
[2026-03-09 09:49:32] 2026-03-09 08:48:32,819 | INFO     | 
[2026-03-09 09:49:32] 2026-03-09 08:48:32,819 | INFO     | job summary report
[2026-03-09 09:49:32] 2026-03-09 08:48:32,819 | INFO     | --------------------------------------------------
[2026-03-09 09:49:32] 2026-03-09 08:48:32,820 | INFO     | PanDA job id: 7040101813
[2026-03-09 09:49:32] 2026-03-09 08:48:32,820 | INFO     | task id: 48955006
[2026-03-09 09:49:32] 2026-03-09 08:48:32,820 | INFO     | errors: (none)
[2026-03-09 09:49:32] 2026-03-09 08:48:32,820 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-09 09:49:32] 2026-03-09 08:48:32,820 | INFO     | pilot state: finished 
[2026-03-09 09:49:32] 2026-03-09 08:48:32,820 | INFO     | transexitcode: 0
[2026-03-09 09:49:32] 2026-03-09 08:48:32,820 | INFO     | exeerrorcode: 0
[2026-03-09 09:49:32] 2026-03-09 08:48:32,820 | INFO     | exeerrordiag: 
[2026-03-09 09:49:32] 2026-03-09 08:48:32,820 | INFO     | exitcode: 0
[2026-03-09 09:49:32] 2026-03-09 08:48:32,820 | INFO     | exitmsg: OK
[2026-03-09 09:49:32] 2026-03-09 08:48:32,821 | INFO     | cpuconsumptiontime: 51396 s
[2026-03-09 09:49:32] 2026-03-09 08:48:32,821 | INFO     | nevents: 400
[2026-03-09 09:49:32] 2026-03-09 08:48:32,821 | INFO     | neventsw: 0
[2026-03-09 09:49:32] 2026-03-09 08:48:32,821 | INFO     | pid: 18353
[2026-03-09 09:49:32] 2026-03-09 08:48:32,821 | INFO     | pgrp: 18353
[2026-03-09 09:49:32] 2026-03-09 08:48:32,821 | INFO     | corecount: 8
[2026-03-09 09:49:32] 2026-03-09 08:48:32,821 | INFO     | event service: False
[2026-03-09 09:49:32] 2026-03-09 08:48:32,821 | INFO     | sizes: {0: 2279800, 1: 2280261, 12: 2280261, 7982: 2308012, 7984: 2317012, 7987: 2317390}
[2026-03-09 09:49:32] 2026-03-09 08:48:32,821 | INFO     | --------------------------------------------------
[2026-03-09 09:49:32] 2026-03-09 08:48:32,821 | INFO     | 
[2026-03-09 09:49:32] 2026-03-09 08:48:32,822 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2026-03-09 09:49:32] 2026-03-09 08:48:32,873 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-09 09:49:32] 2026-03-09 08:48:32,873 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-09 09:49:32] 2026-03-09 08:48:32,873 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-09 09:49:32] 2026-03-09 08:48:32,873 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-09 09:49:32] 2026-03-09 08:48:32,874 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-09 09:49:32] 2026-03-09 08:48:32,874 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-09 09:49:32] 2026-03-09 08:48:32,874 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-09 09:49:32] 2026-03-09 08:48:32,874 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-09 09:49:32] 2026-03-09 08:48:32,874 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-09 09:49:32] 2026-03-09 08:48:32,874 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-09 09:49:32] 2026-03-09 08:48:32,874 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-09 09:49:32] 2026-03-09 08:48:32,874 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-09 09:49:32] 2026-03-09 08:48:32,874 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-09 09:49:32] 2026-03-09 08:48:32,874 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-09 09:49:32] 2026-03-09 08:48:32,875 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-09 09:49:32] 2026-03-09 08:48:32,875 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-09 09:49:32] 2026-03-09 08:48:32,875 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-09 09:49:32] 2026-03-09 08:48:32,875 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-09 09:49:32] 2026-03-09 08:48:32,875 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-09 09:49:32] 2026-03-09 08:48:32,875 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-09 09:49:32] 2026-03-09 08:48:32,875 | INFO     | job 7040101813 has completed (purged errors)
[2026-03-09 09:49:32] 2026-03-09 08:48:32,876 | INFO     | overall cleanup function is called
[2026-03-09 09:49:32] 2026-03-09 08:48:33,884 | INFO     | --- collectZombieJob: --- 10, [18353]
[2026-03-09 09:49:32] 2026-03-09 08:48:33,884 | INFO     | zombie collector waiting for pid 18353
[2026-03-09 09:49:32] 2026-03-09 08:48:33,885 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-09 09:49:32] 2026-03-09 08:48:33,885 | INFO     | collected zombie processes
[2026-03-09 09:49:32] 2026-03-09 08:48:33,885 | INFO     | will attempt to kill all subprocesses of pid=18353
[2026-03-09 09:49:32] 2026-03-09 08:48:33,954 | INFO     | process IDs to be killed: [18353] (in reverse order)
[2026-03-09 09:49:32] 2026-03-09 08:48:34,021 | WARNING  | found no corresponding commands to process id(s)
[2026-03-09 09:49:32] 2026-03-09 08:48:34,021 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-09 09:49:32] 2026-03-09 08:48:34,024 | INFO     | did not find any defunct processes belonging to 18353
[2026-03-09 09:49:32] 2026-03-09 08:48:34,025 | INFO     | did not find any defunct processes belonging to 18353
[2026-03-09 09:49:32] 2026-03-09 08:48:34,025 | INFO     | ready for new job
[2026-03-09 09:49:32] 2026-03-09 08:48:34,026 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-09 09:49:32] 2026-03-09 08:48:34,027 | INFO     | **************************************
[2026-03-09 09:49:32] 2026-03-09 08:48:34,028 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-09 09:49:32] 2026-03-09 08:48:34,028 | INFO     | **************************************
[2026-03-09 09:49:32] 2026-03-09 08:48:34,028 | INFO     | 
[2026-03-09 09:49:32] 2026-03-09 08:48:34,028 | INFO     | pilot is running in a VM
[2026-03-09 09:49:32] 2026-03-09 08:48:34,029 | INFO     | architecture information:
[2026-03-09 09:49:32] 2026-03-09 08:48:34,029 | INFO     | executing command: cat /etc/os-release
[2026-03-09 09:49:32] 2026-03-09 08:48:34,052 | INFO     | cat /etc/os-release:
[2026-03-09 09:49:32] NAME="CentOS Linux"
[2026-03-09 09:49:32] VERSION="7 (Core)"
[2026-03-09 09:49:32] ID="centos"
[2026-03-09 09:49:32] ID_LIKE="rhel fedora"
[2026-03-09 09:49:32] VERSION_ID="7"
[2026-03-09 09:49:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-09 09:49:32] ANSI_COLOR="0;31"
[2026-03-09 09:49:32] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-09 09:49:32] HOME_URL="https://www.centos.org/"
[2026-03-09 09:49:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-09 09:49:32] 
[2026-03-09 09:49:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-09 09:49:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-09 09:49:32] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-09 09:49:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-09 09:49:32] 
[2026-03-09 09:49:32] 2026-03-09 08:48:34,052 | INFO     | **************************************
[2026-03-09 09:49:32] 2026-03-09 08:48:34,554 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2026-03-09 09:49:32] 2026-03-09 08:48:34,593 | INFO     | sufficient remaining disk space (497202233344 B)
[2026-03-09 09:49:32] 2026-03-09 08:48:34,593 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-09 09:49:32] 2026-03-09 08:48:34,593 | INFO     | current server update state: UPDATING_FINAL
[2026-03-09 09:49:32] 2026-03-09 08:48:34,593 | INFO     | update_server=False
[2026-03-09 09:49:32] 2026-03-09 08:48:34,594 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-09 09:49:32] 2026-03-09 08:48:34,594 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-09 09:49:32] 2026-03-09 08:48:34,594 | INFO     | found 0 job(s) in 20 queues
[2026-03-09 09:49:32] 2026-03-09 08:48:34,595 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-09 09:49:32] 2026-03-09 08:48:34,595 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-09 09:49:32] 2026-03-09 08:48:34,595 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-09 09:49:32] 2026-03-09 08:48:34,595 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-09 09:49:32] 2026-03-09 08:48:35,061 | INFO     | all data control threads have been joined
[2026-03-09 09:49:32] 2026-03-09 08:48:35,243 | INFO     | all job control threads have been joined
[2026-03-09 09:49:32] 2026-03-09 08:48:35,320 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-09 09:49:32] 2026-03-09 08:48:35,320 | INFO     | aborting loop
[2026-03-09 09:49:32] 2026-03-09 08:48:35,599 | INFO     | [job] retrieve thread has finished
[2026-03-09 09:49:32] 2026-03-09 08:48:35,601 | INFO     | [job] queue monitor thread has finished
[2026-03-09 09:49:32] 2026-03-09 08:48:35,788 | INFO     | [job] validate thread has finished
[2026-03-09 09:49:32] 2026-03-09 08:48:35,802 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-09 09:49:32] 2026-03-09 08:48:35,802 | INFO     | all payload control threads have been joined
[2026-03-09 09:49:32] 2026-03-09 08:48:35,823 | INFO     | [data] copytool_in thread has finished
[2026-03-09 09:49:32] 2026-03-09 08:48:36,041 | INFO     | [payload] execute_payloads thread has finished
[2026-03-09 09:49:32] 2026-03-09 08:48:36,067 | INFO     | [data] control thread has finished
[2026-03-09 09:49:32] 2026-03-09 08:48:36,249 | INFO     | [job] control thread has finished
[2026-03-09 09:49:32] 2026-03-09 08:48:36,326 | INFO     | [job] job monitor thread has finished
[2026-03-09 09:49:32] 2026-03-09 08:48:36,328 | INFO     | [payload] validate_pre thread has finished
[2026-03-09 09:49:32] 2026-03-09 08:48:36,650 | INFO     | [payload] validate_post thread has finished
[2026-03-09 09:49:32] 2026-03-09 08:48:36,714 | INFO     | [job] create_data_payload thread has finished
[2026-03-09 09:49:32] 2026-03-09 08:48:36,808 | INFO     | [payload] control thread has finished
[2026-03-09 09:49:32] 2026-03-09 08:48:36,958 | INFO     | [payload] failed_post thread has finished
[2026-03-09 09:49:32] 2026-03-09 08:48:37,048 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-09 09:49:32] 2026-03-09 08:48:37,808 | INFO     | [data] copytool_out thread has finished
[2026-03-09 09:49:32] 2026-03-09 08:48:38,602 | INFO     | [data] queue_monitor thread has finished
[2026-03-09 09:49:32] 2026-03-09 08:49:25,384 | INFO     | [monitor] cgroup control has ended
[2026-03-09 09:49:32] 2026-03-09 08:49:27,296 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139841844045632)>', '<ExcThread(monitor, started 139841551447808)>']
[2026-03-09 09:49:32] 2026-03-09 08:49:27,799 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-09 09:49:32] 2026-03-09 08:49:27,799 | INFO     | [monitor] control thread has ended
[2026-03-09 09:49:32] 2026-03-09 08:49:32,322 | INFO     | all workflow threads have been joined
[2026-03-09 09:49:32] 2026-03-09 08:49:32,322 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-09 09:49:32] 2026-03-09 08:49:32,323 | INFO     | traces error code: 0
[2026-03-09 09:49:32] 2026-03-09 08:49:32,323 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-09 09:49:32] 2026-03-09 08:49:32,482 [wrapper] ==== pilot stdout END ====
[2026-03-09 09:49:32] 2026-03-09 08:49:32,497 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-09 09:49:32] 2026-03-09 08:49:32,506 [wrapper] pilotpid: 13882
[2026-03-09 09:49:32] 2026-03-09 08:49:32,515 [wrapper] Pilot exit status: 0
[2026-03-09 09:49:32] 2026-03-09 08:49:32,549 [wrapper] pandaids: 7040101813
[2026-03-09 09:49:32] 2026-03-09 08:49:32,603 [wrapper] cleanup supervisor_pilot  7524 13883
[2026-03-09 09:49:32] 2026-03-09 08:49:32,610 [wrapper] Test setup, not cleaning
[2026-03-09 09:49:32] 2026-03-09 08:49:32,623 [wrapper] apfmon messages muted
[2026-03-09 09:49:32] 2026-03-09 08:49:32,630 [wrapper] ==== wrapper stdout END ====
[2026-03-09 09:49:32] 2026-03-09 08:49:32,639 [wrapper] ==== wrapper stderr END ====
[2026-03-09 09:49:32]  *** Error codes and diagnostics ***
[2026-03-09 09:49:32]     "exeErrorCode": 0,
[2026-03-09 09:49:32]     "exeErrorDiag": "",
[2026-03-09 09:49:32]     "pilotErrorCode": 0,
[2026-03-09 09:49:32]     "pilotErrorDiag": "",
[2026-03-09 09:49:32]  *** Listing of results directory ***
[2026-03-09 09:49:32] total 612540
[2026-03-09 09:49:32] -rw-r--r--. 1 boinc boinc    584627 Mar  8 20:29 pilot3.tar.gz
[2026-03-09 09:49:32] -rwx------. 1 boinc boinc     36322 Mar  8 20:32 runpilot2-wrapper.sh
[2026-03-09 09:49:32] -rw-r--r--. 1 boinc boinc      5111 Mar  8 20:33 queuedata.json
[2026-03-09 09:49:32] -rw-r--r--. 1 boinc boinc       100 Mar  9 07:28 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-09 09:49:32] -rwxr-xr-x. 1 boinc boinc      7986 Mar  9 07:28 run_atlas
[2026-03-09 09:49:32] -rw-r--r--. 1 boinc boinc       105 Mar  9 07:28 job.xml
[2026-03-09 09:49:32] -rw-r--r--. 2 boinc boinc 436414593 Mar  9 07:28 EVNT.46701403._000563.pool.root.1
[2026-03-09 09:49:32] -rw-r--r--. 1 boinc boinc      6392 Mar  9 07:28 init_data.xml
[2026-03-09 09:49:32] -rw-r--r--. 2 boinc boinc     15845 Mar  9 07:28 start_atlas.sh
[2026-03-09 09:49:32] drwxrwx--x. 2 boinc boinc        68 Mar  9 07:28 shared
[2026-03-09 09:49:32] -rw-r--r--. 2 boinc boinc    597956 Mar  9 07:28 input.tar.gz
[2026-03-09 09:49:32] -rw-r--r--. 1 boinc boinc         0 Mar  9 07:28 boinc_lockfile
[2026-03-09 09:49:32] -rw-r--r--. 1 boinc boinc      2565 Mar  9 07:28 pandaJob.out
[2026-03-09 09:49:32] -rw-------. 1 boinc boinc   1511578 Mar  9 07:33 agis_ddmendpoints.agis.ALL.json
[2026-03-09 09:49:32] -rw-------. 1 boinc boinc       415 Mar  9 07:35 workernode_map.json
[2026-03-09 09:49:32] -rw-------. 1 boinc boinc    999108 Mar  9 07:35 agis_schedconf.cvmfs.json
[2026-03-09 09:49:32] drwx------. 5 boinc boinc      4096 Mar  9 07:35 pilot3
[2026-03-09 09:49:32] -rw-------. 1 boinc boinc 183771847 Mar  9 09:47 HITS.48955006._028165.pool.root.1
[2026-03-09 09:49:32] -rw-------. 1 boinc boinc        95 Mar  9 09:48 pilot_heartbeat.json
[2026-03-09 09:49:32] -rw-r--r--. 1 boinc boinc       531 Mar  9 09:48 boinc_task_state.xml
[2026-03-09 09:49:32] -rw-------. 1 boinc boinc      1024 Mar  9 09:48 memory_monitor_summary.json
[2026-03-09 09:49:32] -rw-------. 1 boinc boinc    411573 Mar  9 09:48 log.48955006._028165.job.log.tgz.1
[2026-03-09 09:49:32] -rw-------. 1 boinc boinc      6328 Mar  9 09:48 heartbeat.json
[2026-03-09 09:49:32] -rw-r--r--. 1 boinc boinc      8192 Mar  9 09:49 boinc_mmap_file
[2026-03-09 09:49:32] -rw-r--r--. 1 boinc boinc        27 Mar  9 09:49 wrapper_checkpoint.txt
[2026-03-09 09:49:32] -rw-------. 1 boinc boinc      4612 Mar  9 09:49 pilotlog.txt
[2026-03-09 09:49:32] -rw-------. 1 boinc boinc   1155289 Mar  9 09:49 log.48955006._028165.job.log.1
[2026-03-09 09:49:32] -rw-------. 1 boinc boinc       357 Mar  9 09:49 output.list
[2026-03-09 09:49:32] -rw-r--r--. 1 boinc boinc       620 Mar  9 09:49 runtime_log
[2026-03-09 09:49:32] -rw-------. 1 boinc boinc   1587200 Mar  9 09:49 result.tar.gz
[2026-03-09 09:49:32] -rw-r--r--. 1 boinc boinc      8831 Mar  9 09:49 runtime_log.err
[2026-03-09 09:49:32] -rw-------. 1 boinc boinc       652 Mar  9 09:49 8KwLDmc2YJ9n9Rq4apOajLDm4fhM0noT9bVooX4SDmicXLDm3XvxSo.diag
[2026-03-09 09:49:32] -rw-r--r--. 1 boinc boinc     20630 Mar  9 09:49 stderr.txt
[2026-03-09 09:49:32] HITS file was successfully produced:
[2026-03-09 09:49:32] -rw-------. 1 boinc boinc 183771847 Mar  9 09:47 shared/HITS.pool.root.1
[2026-03-09 09:49:32]  *** Contents of shared directory: ***
[2026-03-09 09:49:32] total 607808
[2026-03-09 09:49:32] -rw-r--r--. 2 boinc boinc 436414593 Mar  9 07:28 ATLAS.root_0
[2026-03-09 09:49:32] -rw-r--r--. 2 boinc boinc     15845 Mar  9 07:28 start_atlas.sh
[2026-03-09 09:49:32] -rw-r--r--. 2 boinc boinc    597956 Mar  9 07:28 input.tar.gz
[2026-03-09 09:49:32] -rw-------. 1 boinc boinc 183771847 Mar  9 09:47 HITS.pool.root.1
[2026-03-09 09:49:32] -rw-------. 1 boinc boinc   1587200 Mar  9 09:49 result.tar.gz
09:49:34 (9909): run_atlas exited; CPU time 51463.454841
09:49:34 (9909): called boinc_finish(0)

</stderr_txt>
]]>

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