Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:57:50 (2796733): wrapper (7.7.26015): starting
14:57:50 (2796733): wrapper: running run_atlas (--nthreads 4)
[2026-03-09 14:57:50] Arguments: --nthreads 4
[2026-03-09 14:57:50] Threads: 4
[2026-03-09 14:57:50] Checking for CVMFS
[2026-03-09 14:57:50] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-09 14:57:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-09 14:57:51] Running cvmfs_config stat atlas.cern.ch
[2026-03-09 14:57:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-09 14:57:51] 2.9.2.0 3074 15632 103424 157078 2 50 28751342 36864001 0 130560 0 7042739 99.985 580587 13203 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-09 14:57:51] CVMFS is ok
[2026-03-09 14:57:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-09 14:57:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-09 14:57:51] Further information can be found at the LHC@home message board.
[2026-03-09 14:57:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-09 14:57:51] Checking for apptainer binary...
[2026-03-09 14:57:51] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-09 14:57:51] Running /usr/bin/apptainer --version
[2026-03-09 14:57:51] apptainer version 1.4.1-1.1
[2026-03-09 14:57:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-09 14:57:51] thA314
[2026-03-09 14:57:51] apptainer works
[2026-03-09 14:57:51] Set ATHENA_PROC_NUMBER=4
[2026-03-09 14:57:51] Set ATHENA_CORE_NUMBER=4
[2026-03-09 14:57:51] Starting ATLAS job with PandaID=7040100998
[2026-03-09 14:57:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-09 16:08:15]  *** The last 200 lines of the pilot log: ***
[2026-03-09 16:08:15] 2026-03-09 15:07:51,770 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-09 16:08:15] 2026-03-09 15:07:51,770 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-09 16:08:15] 2026-03-09 15:07:51,770 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-09 16:08:15] 2026-03-09 15:07:51,770 | INFO     | job 7040100998 has completed (purged errors)
[2026-03-09 16:08:15] 2026-03-09 15:07:51,770 | INFO     | overall cleanup function is called
[2026-03-09 16:08:15] 2026-03-09 15:07:52,777 | INFO     | --- collectZombieJob: --- 10, [2805361]
[2026-03-09 16:08:15] 2026-03-09 15:07:52,777 | INFO     | zombie collector waiting for pid 2805361
[2026-03-09 16:08:15] 2026-03-09 15:07:52,777 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-09 16:08:15] 2026-03-09 15:07:52,778 | INFO     | collected zombie processes
[2026-03-09 16:08:15] 2026-03-09 15:07:52,778 | INFO     | will attempt to kill all subprocesses of pid=2805361
[2026-03-09 16:08:15] 2026-03-09 15:07:52,833 | INFO     | process IDs to be killed: [2805361] (in reverse order)
[2026-03-09 16:08:15] 2026-03-09 15:07:52,871 | WARNING  | found no corresponding commands to process id(s)
[2026-03-09 16:08:15] 2026-03-09 15:07:52,871 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-09 16:08:15] 2026-03-09 15:07:52,874 | INFO     | did not find any defunct processes belonging to 2805361
[2026-03-09 16:08:15] 2026-03-09 15:07:52,875 | INFO     | did not find any defunct processes belonging to 2805361
[2026-03-09 16:08:15] 2026-03-09 15:07:52,875 | INFO     | ready for new job
[2026-03-09 16:08:15] 2026-03-09 15:07:52,875 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-09 16:08:15] 2026-03-09 15:07:52,876 | INFO     | **************************************
[2026-03-09 16:08:15] 2026-03-09 15:07:52,876 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-09 16:08:15] 2026-03-09 15:07:52,876 | INFO     | **************************************
[2026-03-09 16:08:15] 2026-03-09 15:07:52,876 | INFO     | 
[2026-03-09 16:08:15] 2026-03-09 15:07:52,877 | INFO     | architecture information:
[2026-03-09 16:08:15] 2026-03-09 15:07:52,877 | INFO     | executing command: cat /etc/os-release
[2026-03-09 16:08:15] 2026-03-09 15:07:52,892 | INFO     | cat /etc/os-release:
[2026-03-09 16:08:15] NAME="CentOS Linux"
[2026-03-09 16:08:15] VERSION="7 (Core)"
[2026-03-09 16:08:15] ID="centos"
[2026-03-09 16:08:15] ID_LIKE="rhel fedora"
[2026-03-09 16:08:15] VERSION_ID="7"
[2026-03-09 16:08:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-09 16:08:15] ANSI_COLOR="0;31"
[2026-03-09 16:08:15] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-09 16:08:15] HOME_URL="https://www.centos.org/"
[2026-03-09 16:08:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-09 16:08:15] 
[2026-03-09 16:08:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-09 16:08:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-09 16:08:15] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-09 16:08:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-09 16:08:15] 
[2026-03-09 16:08:15] 2026-03-09 15:07:52,893 | INFO     | **************************************
[2026-03-09 16:08:15] 2026-03-09 15:07:53,396 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-09 16:08:15] 2026-03-09 15:07:53,414 | INFO     | sufficient remaining disk space (227342811136 B)
[2026-03-09 16:08:15] 2026-03-09 15:07:53,415 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-09 16:08:15] 2026-03-09 15:07:53,415 | INFO     | current server update state: UPDATING_FINAL
[2026-03-09 16:08:15] 2026-03-09 15:07:53,415 | INFO     | update_server=False
[2026-03-09 16:08:15] 2026-03-09 15:07:53,415 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-09 16:08:15] 2026-03-09 15:07:53,415 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-09 16:08:15] 2026-03-09 15:07:53,415 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-09 16:08:15] 2026-03-09 15:07:53,415 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-09 16:08:15] 2026-03-09 15:07:53,416 | INFO     | found 0 job(s) in 20 queues
[2026-03-09 16:08:15] 2026-03-09 15:07:53,416 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-09 16:08:15] 2026-03-09 15:07:53,416 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-09 16:08:15] 2026-03-09 15:07:53,443 | INFO     | all data control threads have been joined
[2026-03-09 16:08:15] 2026-03-09 15:07:53,895 | INFO     | all job control threads have been joined
[2026-03-09 16:08:15] 2026-03-09 15:07:54,120 | INFO     | all payload control threads have been joined
[2026-03-09 16:08:15] 2026-03-09 15:07:54,187 | INFO     | job.realtimelogging is not enabled
[2026-03-09 16:08:15] 2026-03-09 15:07:54,188 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-09 16:08:15] 2026-03-09 15:07:54,188 | INFO     | aborting loop
[2026-03-09 16:08:15] 2026-03-09 15:07:54,421 | INFO     | [job] retrieve thread has finished
[2026-03-09 16:08:15] 2026-03-09 15:07:54,421 | INFO     | [job] queue monitor thread has finished
[2026-03-09 16:08:15] 2026-03-09 15:07:54,449 | INFO     | [data] control thread has finished
[2026-03-09 16:08:15] 2026-03-09 15:07:54,516 | INFO     | [payload] validate_pre thread has finished
[2026-03-09 16:08:15] 2026-03-09 15:07:54,889 | INFO     | [payload] failed_post thread has finished
[2026-03-09 16:08:15] 2026-03-09 15:07:54,900 | INFO     | [job] control thread has finished
[2026-03-09 16:08:15] 2026-03-09 15:07:55,126 | INFO     | [payload] control thread has finished
[2026-03-09 16:08:15] 2026-03-09 15:07:55,190 | INFO     | [job] job monitor thread has finished
[2026-03-09 16:08:15] 2026-03-09 15:07:55,191 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-09 16:08:15] 2026-03-09 15:07:55,421 | INFO     | [data] copytool_out thread has finished
[2026-03-09 16:08:15] 2026-03-09 15:07:55,442 | INFO     | [payload] execute_payloads thread has finished
[2026-03-09 16:08:15] 2026-03-09 15:07:55,576 | INFO     | [job] validate thread has finished
[2026-03-09 16:08:15] 2026-03-09 15:07:55,881 | INFO     | [payload] validate_post thread has finished
[2026-03-09 16:08:15] 2026-03-09 15:07:55,894 | INFO     | [data] copytool_in thread has finished
[2026-03-09 16:08:15] 2026-03-09 15:07:55,904 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-09 16:08:15] 2026-03-09 15:07:55,919 | INFO     | [job] create_data_payload thread has finished
[2026-03-09 16:08:15] 2026-03-09 15:07:59,911 | INFO     | [data] queue_monitor thread has finished
[2026-03-09 16:08:15] 2026-03-09 15:08:09,110 | INFO     | [monitor] cgroup control has ended
[2026-03-09 16:08:15] 2026-03-09 15:08:10,441 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140573651441472)>', '<ExcThread(monitor, started 140573298108160)>']
[2026-03-09 16:08:15] 2026-03-09 15:08:10,503 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-09 16:08:15] 2026-03-09 15:08:10,503 | INFO     | [monitor] control thread has ended
[2026-03-09 16:08:15] 2026-03-09 15:08:15,467 | INFO     | all workflow threads have been joined
[2026-03-09 16:08:15] 2026-03-09 15:08:15,467 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-09 16:08:15] 2026-03-09 15:08:15,468 | INFO     | traces error code: 0
[2026-03-09 16:08:15] 2026-03-09 15:08:15,468 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-09 16:08:15] 2026-03-09 15:08:15,547 [wrapper] ==== pilot stdout END ====
[2026-03-09 16:08:15] 2026-03-09 15:08:15,551 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-09 16:08:15] 2026-03-09 15:08:15,555 [wrapper] pilotpid: 2800851
[2026-03-09 16:08:15] 2026-03-09 15:08:15,559 [wrapper] Pilot exit status: 0
[2026-03-09 16:08:15] 2026-03-09 15:08:15,571 [wrapper] pandaids: 7040100998
[2026-03-09 16:08:15] 2026-03-09 15:08:15,595 [wrapper] cleanup supervisor_pilot 2811796 2800852
[2026-03-09 16:08:15] 2026-03-09 15:08:15,598 [wrapper] Test setup, not cleaning
[2026-03-09 16:08:15] 2026-03-09 15:08:15,602 [wrapper] apfmon messages muted
[2026-03-09 16:08:15] 2026-03-09 15:08:15,606 [wrapper] ==== wrapper stdout END ====
[2026-03-09 16:08:15] 2026-03-09 15:08:15,610 [wrapper] ==== wrapper stderr END ====
[2026-03-09 16:08:15]  *** Error codes and diagnostics ***
[2026-03-09 16:08:15]     "exeErrorCode": 0,
[2026-03-09 16:08:15]     "exeErrorDiag": "",
[2026-03-09 16:08:15]     "pilotErrorCode": 0,
[2026-03-09 16:08:15]     "pilotErrorDiag": "",
[2026-03-09 16:08:15]  *** Listing of results directory ***
[2026-03-09 16:08:15] total 615828
[2026-03-09 16:08:15] -rw-r--r-- 1 boinc boinc      5111 Mar  8 20:29 queuedata.json
[2026-03-09 16:08:15] -rw-r--r-- 1 boinc boinc    584627 Mar  8 20:29 pilot3.tar.gz
[2026-03-09 16:08:15] -rwx------ 1 boinc boinc     36322 Mar  8 20:29 runpilot2-wrapper.sh
[2026-03-09 16:08:15] -rw-r--r-- 1 boinc boinc       100 Mar  9 14:57 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-09 16:08:15] -rwxr-xr-x 1 boinc boinc      7986 Mar  9 14:57 run_atlas
[2026-03-09 16:08:15] -rw-r--r-- 1 boinc boinc       105 Mar  9 14:57 job.xml
[2026-03-09 16:08:15] -rw-r--r-- 2 boinc boinc 440304458 Mar  9 14:57 EVNT.46701403._000560.pool.root.1
[2026-03-09 16:08:15] -rw-r--r-- 2 boinc boinc    597952 Mar  9 14:57 input.tar.gz
[2026-03-09 16:08:15] -rw-r--r-- 2 boinc boinc     15845 Mar  9 14:57 start_atlas.sh
[2026-03-09 16:08:15] drwxrwx--x 2 boinc boinc      4096 Mar  9 14:57 shared
[2026-03-09 16:08:15] -rw-r--r-- 1 boinc boinc         0 Mar  9 14:57 boinc_setup_complete
[2026-03-09 16:08:15] -rw-r--r-- 1 boinc boinc      6376 Mar  9 14:57 init_data.xml
[2026-03-09 16:08:15] -rw-r--r-- 1 boinc boinc         0 Mar  9 14:57 boinc_lockfile
[2026-03-09 16:08:15] -rw-r--r-- 1 boinc boinc      2564 Mar  9 14:57 pandaJob.out
[2026-03-09 16:08:15] -rw------- 1 boinc boinc    990728 Mar  9 14:57 agis_schedconf.cvmfs.json
[2026-03-09 16:08:15] -rw------- 1 boinc boinc   1511578 Mar  9 14:57 agis_ddmendpoints.agis.ALL.json
[2026-03-09 16:08:15] -rw------- 1 boinc boinc       427 Mar  9 14:58 workernode_map.json
[2026-03-09 16:08:15] drwx------ 5 boinc boinc      4096 Mar  9 14:58 pilot3
[2026-03-09 16:08:15] -rw------- 1 boinc boinc        95 Mar  9 16:07 pilot_heartbeat.json
[2026-03-09 16:08:15] -rw------- 1 boinc boinc 184645014 Mar  9 16:07 HITS.48955006._027976.pool.root.1
[2026-03-09 16:08:15] -rw-r--r-- 1 boinc boinc       530 Mar  9 16:07 boinc_task_state.xml
[2026-03-09 16:08:15] -rw------- 1 boinc boinc      1020 Mar  9 16:07 memory_monitor_summary.json
[2026-03-09 16:08:15] -rw------- 1 boinc boinc    251884 Mar  9 16:07 log.48955006._027976.job.log.tgz.1
[2026-03-09 16:08:15] -rw------- 1 boinc boinc      6329 Mar  9 16:07 heartbeat.json
[2026-03-09 16:08:15] -rw-r--r-- 1 boinc boinc      8192 Mar  9 16:08 boinc_mmap_file
[2026-03-09 16:08:15] -rw-r--r-- 1 boinc boinc        27 Mar  9 16:08 wrapper_checkpoint.txt
[2026-03-09 16:08:15] -rw------- 1 boinc boinc      4624 Mar  9 16:08 pilotlog.txt
[2026-03-09 16:08:15] -rw------- 1 boinc boinc    621989 Mar  9 16:08 log.48955006._027976.job.log.1
[2026-03-09 16:08:15] -rw------- 1 boinc boinc       357 Mar  9 16:08 output.list
[2026-03-09 16:08:15] -rw-r--r-- 1 boinc boinc       620 Mar  9 16:08 runtime_log
[2026-03-09 16:08:15] -rw------- 1 boinc boinc    890880 Mar  9 16:08 result.tar.gz
[2026-03-09 16:08:15] -rw------- 1 boinc boinc       657 Mar  9 16:08 wq1NDmWzYJ9n9Rq4apOajLDm4fhM0noT9bVooX4SDmoXXLDmLoEOrm.diag
[2026-03-09 16:08:15] -rw-r--r-- 1 boinc boinc      8896 Mar  9 16:08 runtime_log.err
[2026-03-09 16:08:15] -rw-r--r-- 1 boinc boinc     11123 Mar  9 16:08 stderr.txt
[2026-03-09 16:08:15] HITS file was successfully produced:
[2026-03-09 16:08:15] -rw------- 1 boinc boinc 184645014 Mar  9 16:07 shared/HITS.pool.root.1
[2026-03-09 16:08:15]  *** Contents of shared directory: ***
[2026-03-09 16:08:15] total 611788
[2026-03-09 16:08:15] -rw-r--r-- 2 boinc boinc 440304458 Mar  9 14:57 ATLAS.root_0
[2026-03-09 16:08:15] -rw-r--r-- 2 boinc boinc    597952 Mar  9 14:57 input.tar.gz
[2026-03-09 16:08:15] -rw-r--r-- 2 boinc boinc     15845 Mar  9 14:57 start_atlas.sh
[2026-03-09 16:08:15] -rw------- 1 boinc boinc 184645014 Mar  9 16:07 HITS.pool.root.1
[2026-03-09 16:08:15] -rw------- 1 boinc boinc    890880 Mar  9 16:08 result.tar.gz
16:08:17 (2796733): run_atlas exited; CPU time 15771.870351
16:08:17 (2796733): called boinc_finish(0)

</stderr_txt>
]]>

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