Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:56:48 (15854): wrapper (7.7.26015): starting
04:56:48 (15854): wrapper: running run_atlas (--nthreads 8)
[2026-03-09 04:56:48] Arguments: --nthreads 8
[2026-03-09 04:56:48] Threads: 8
[2026-03-09 04:56:48] Checking for CVMFS
[2026-03-09 04:56:48] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-09 04:56:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-09 04:56:50] Running cvmfs_config stat atlas.cern.ch
[2026-03-09 04:56:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-09 04:56:51] 2.11.2.0 22482 119846 136608 157063 0 54 17506414 25165825 4834 130560 163 43699369 99.852 28844289 1029 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-09 04:56:51] CVMFS is ok
[2026-03-09 04:56:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-09 04:56:51] Checking for apptainer binary...
[2026-03-09 04:56:51] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-09 04:56:51] Running /usr/bin/apptainer --version
[2026-03-09 04:56:51] apptainer version 1.3.2-1.el7
[2026-03-09 04:56:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-09 04:57:01] cg-vwn445.simple-grid.lan
[2026-03-09 04:57:01] apptainer works
[2026-03-09 04:57:01] Set ATHENA_PROC_NUMBER=8
[2026-03-09 04:57:01] Set ATHENA_CORE_NUMBER=8
[2026-03-09 04:57:01] Starting ATLAS job with PandaID=7039904986
[2026-03-09 04:57:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-09 08:58:53]  *** The last 200 lines of the pilot log: ***
[2026-03-09 08:58:53] 2026-03-09 07:58:04,093 | INFO     | using path: /var/lib/boinc/slots/16/PanDA_Pilot-7039904986/memory_monitor_summary.json (trf name=prmon)
[2026-03-09 08:58:53] 2026-03-09 07:58:04,094 | INFO     | extracted standard info from prmon json
[2026-03-09 08:58:53] 2026-03-09 07:58:04,094 | INFO     | extracted standard memory fields from prmon json
[2026-03-09 08:58:53] 2026-03-09 07:58:04,094 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-09 08:58:53] 2026-03-09 07:58:04,095 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-09 08:58:53] 2026-03-09 07:58:04,095 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-09 08:58:53] 2026-03-09 07:58:04,100 | INFO     | fitting pss+swap vs Time
[2026-03-09 08:58:53] 2026-03-09 07:58:04,100 | INFO     | sum of square deviations: 3675146117.0
[2026-03-09 08:58:53] 2026-03-09 07:58:04,102 | INFO     | sum of deviations: 94103113481.5
[2026-03-09 08:58:53] 2026-03-09 07:58:04,102 | INFO     | mean x: 1773036105.5
[2026-03-09 08:58:53] 2026-03-09 07:58:04,103 | INFO     | mean y: 2421977.995614035
[2026-03-09 08:58:53] 2026-03-09 07:58:04,103 | INFO     | intersect: -45396648570.75865
[2026-03-09 08:58:53] 2026-03-09 07:58:04,103 | INFO     | chi2: 5.686755000567641
[2026-03-09 08:58:53] 2026-03-09 07:58:04,104 | INFO     | sum of square deviations: 3438620752.0
[2026-03-09 08:58:53] 2026-03-09 07:58:04,105 | INFO     | sum of deviations: 106837195779.0
[2026-03-09 08:58:53] 2026-03-09 07:58:04,106 | INFO     | mean x: 1773035953.0
[2026-03-09 08:58:53] 2026-03-09 07:58:04,106 | INFO     | mean y: 2430015.206278027
[2026-03-09 08:58:53] 2026-03-09 07:58:04,106 | INFO     | intersect: -55085409818.16039
[2026-03-09 08:58:53] 2026-03-09 07:58:04,106 | INFO     | chi2: 4.950407506837781
[2026-03-09 08:58:53] 2026-03-09 07:58:04,107 | INFO     | current chi2=4.950407506837781 (change=12.948465225886455 %)
[2026-03-09 08:58:53] 2026-03-09 07:58:04,107 | INFO     | right removable region: 222
[2026-03-09 08:58:53] 2026-03-09 07:58:04,107 | INFO     | sum of square deviations: 3438620752.0
[2026-03-09 08:58:53] 2026-03-09 07:58:04,109 | INFO     | sum of deviations: 19451426606.0
[2026-03-09 08:58:53] 2026-03-09 07:58:04,109 | INFO     | mean x: 1773036258.0
[2026-03-09 08:58:53] 2026-03-09 07:58:04,109 | INFO     | mean y: 2470055.484304933
[2026-03-09 08:58:53] 2026-03-09 07:58:04,109 | INFO     | intersect: -10027157265.936537
[2026-03-09 08:58:53] 2026-03-09 07:58:04,110 | INFO     | chi2: 1.4407056462069379
[2026-03-09 08:58:53] 2026-03-09 07:58:04,110 | INFO     | current chi2=1.4407056462069379 (change=74.66559318867914 %)
[2026-03-09 08:58:53] 2026-03-09 07:58:04,110 | INFO     | sum of square deviations: 3212467674.5
[2026-03-09 08:58:53] 2026-03-09 07:58:04,115 | INFO     | sum of deviations: -4597009562.500002
[2026-03-09 08:58:53] 2026-03-09 07:58:04,115 | INFO     | mean x: 1773036410.5
[2026-03-09 08:58:53] 2026-03-09 07:58:04,115 | INFO     | mean y: 2486118.0412844038
[2026-03-09 08:58:53] 2026-03-09 07:58:04,116 | INFO     | intersect: 2539683736.690561
[2026-03-09 08:58:53] 2026-03-09 07:58:04,116 | INFO     | chi2: 0.7993549160924686
[2026-03-09 08:58:53] 2026-03-09 07:58:04,116 | INFO     | current chi2=0.7993549160924686 (change=44.51643066736118 %)
[2026-03-09 08:58:53] 2026-03-09 07:58:04,117 | INFO     | sum of square deviations: 2996454322.0
[2026-03-09 08:58:53] 2026-03-09 07:58:04,118 | INFO     | sum of deviations: -7073439342.0
[2026-03-09 08:58:53] 2026-03-09 07:58:04,118 | INFO     | mean x: 1773036563.0
[2026-03-09 08:58:53] 2026-03-09 07:58:04,119 | INFO     | mean y: 2487864.4225352113
[2026-03-09 08:58:53] 2026-03-09 07:58:04,119 | INFO     | intersect: 4187923459.9025264
[2026-03-09 08:58:53] 2026-03-09 07:58:04,119 | INFO     | chi2: 0.7955107493513622
[2026-03-09 08:58:53] 2026-03-09 07:58:04,119 | INFO     | current chi2=0.7955107493513622 (change=0.48090862565754655 %)
[2026-03-09 08:58:53] 2026-03-09 07:58:04,119 | INFO     | left removable region: 30
[2026-03-09 08:58:53] 2026-03-09 07:58:04,120 | INFO     | sum of square deviations: 2194675568.0
[2026-03-09 08:58:53] 2026-03-09 07:58:04,121 | INFO     | sum of deviations: 3823795126.0
[2026-03-09 08:58:53] 2026-03-09 07:58:04,121 | INFO     | mean x: 1773036837.5
[2026-03-09 08:58:53] 2026-03-09 07:58:04,122 | INFO     | mean y: 2500538.1041666665
[2026-03-09 08:58:53] 2026-03-09 07:58:04,122 | INFO     | intersect: -3086671144.6285563
[2026-03-09 08:58:53] 2026-03-09 07:58:04,122 | INFO     | chi2: 0.0003176160529106108
[2026-03-09 08:58:53] 2026-03-09 07:58:04,122 | INFO     | current memory leak: 1.74 B/s (using 192 data points, chi2=0.00)
[2026-03-09 08:58:53] 2026-03-09 07:58:04,123 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2026-03-09 08:58:53] 2026-03-09 07:58:04,123 | INFO     | ..............................
[2026-03-09 08:58:53] 2026-03-09 07:58:04,123 | INFO     | . Timing measurements:
[2026-03-09 08:58:53] 2026-03-09 07:58:04,123 | INFO     | . get job = 0 s
[2026-03-09 08:58:53] 2026-03-09 07:58:04,123 | INFO     | . initial setup = 99 s
[2026-03-09 08:58:53] 2026-03-09 07:58:04,124 | INFO     | . payload setup = 117 s
[2026-03-09 08:58:53] 2026-03-09 07:58:04,124 | INFO     | . stage-in = 0 s
[2026-03-09 08:58:53] 2026-03-09 07:58:04,124 | INFO     | . payload execution = 14003 s
[2026-03-09 08:58:53] 2026-03-09 07:58:04,124 | INFO     | . stage-out = 3 s
[2026-03-09 08:58:53] 2026-03-09 07:58:04,124 | INFO     | . log creation = 1 s
[2026-03-09 08:58:53] 2026-03-09 07:58:04,124 | INFO     | ..............................
[2026-03-09 08:58:53] 2026-03-09 07:58:04,216 | INFO     | time since job start (14145s) is within the limit (349056.0s)
[2026-03-09 08:58:53] 2026-03-09 07:58:04,245 | INFO     | 
[2026-03-09 08:58:53] 2026-03-09 07:58:04,245 | INFO     | job summary report
[2026-03-09 08:58:53] 2026-03-09 07:58:04,245 | INFO     | --------------------------------------------------
[2026-03-09 08:58:53] 2026-03-09 07:58:04,245 | INFO     | PanDA job id: 7039904986
[2026-03-09 08:58:53] 2026-03-09 07:58:04,245 | INFO     | task id: 48955006
[2026-03-09 08:58:53] 2026-03-09 07:58:04,245 | INFO     | errors: (none)
[2026-03-09 08:58:53] 2026-03-09 07:58:04,245 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-09 08:58:53] 2026-03-09 07:58:04,246 | INFO     | pilot state: finished 
[2026-03-09 08:58:53] 2026-03-09 07:58:04,246 | INFO     | transexitcode: 0
[2026-03-09 08:58:53] 2026-03-09 07:58:04,246 | INFO     | exeerrorcode: 0
[2026-03-09 08:58:53] 2026-03-09 07:58:04,246 | INFO     | exeerrordiag: 
[2026-03-09 08:58:53] 2026-03-09 07:58:04,246 | INFO     | exitcode: 0
[2026-03-09 08:58:53] 2026-03-09 07:58:04,246 | INFO     | exitmsg: OK
[2026-03-09 08:58:53] 2026-03-09 07:58:04,246 | INFO     | cpuconsumptiontime: 54013 s
[2026-03-09 08:58:53] 2026-03-09 07:58:04,246 | INFO     | nevents: 400
[2026-03-09 08:58:53] 2026-03-09 07:58:04,246 | INFO     | neventsw: 0
[2026-03-09 08:58:53] 2026-03-09 07:58:04,246 | INFO     | pid: 24507
[2026-03-09 08:58:53] 2026-03-09 07:58:04,247 | INFO     | pgrp: 24507
[2026-03-09 08:58:53] 2026-03-09 07:58:04,247 | INFO     | corecount: 8
[2026-03-09 08:58:53] 2026-03-09 07:58:04,247 | INFO     | event service: False
[2026-03-09 08:58:53] 2026-03-09 07:58:04,247 | INFO     | sizes: {0: 2279744, 1: 2280201, 2: 2280261, 12: 2280289, 14125: 2310704, 14129: 2319704, 14130: 2319888, 14133: 2320082}
[2026-03-09 08:58:53] 2026-03-09 07:58:04,247 | INFO     | --------------------------------------------------
[2026-03-09 08:58:53] 2026-03-09 07:58:04,247 | INFO     | 
[2026-03-09 08:58:53] 2026-03-09 07:58:04,247 | INFO     | executing command: ls -lF /var/lib/boinc/slots/16
[2026-03-09 08:58:53] 2026-03-09 07:58:04,814 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-09 08:58:53] 2026-03-09 07:58:04,815 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-09 08:58:53] 2026-03-09 07:58:04,815 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-09 08:58:53] 2026-03-09 07:58:04,815 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-09 08:58:53] 2026-03-09 07:58:04,815 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-09 08:58:53] 2026-03-09 07:58:04,815 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-09 08:58:53] 2026-03-09 07:58:04,815 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-09 08:58:53] 2026-03-09 07:58:04,815 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-09 08:58:53] 2026-03-09 07:58:04,815 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-09 08:58:53] 2026-03-09 07:58:04,816 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-09 08:58:53] 2026-03-09 07:58:04,816 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-09 08:58:53] 2026-03-09 07:58:04,816 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-09 08:58:53] 2026-03-09 07:58:04,816 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-09 08:58:53] 2026-03-09 07:58:04,816 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-09 08:58:53] 2026-03-09 07:58:04,816 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-09 08:58:53] 2026-03-09 07:58:04,816 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-09 08:58:53] 2026-03-09 07:58:04,816 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-09 08:58:53] 2026-03-09 07:58:04,817 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-09 08:58:53] 2026-03-09 07:58:04,817 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-09 08:58:53] 2026-03-09 07:58:04,817 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-09 08:58:53] 2026-03-09 07:58:04,817 | INFO     | job 7039904986 has completed (purged errors)
[2026-03-09 08:58:53] 2026-03-09 07:58:04,817 | INFO     | overall cleanup function is called
[2026-03-09 08:58:53] 2026-03-09 07:58:05,832 | INFO     | --- collectZombieJob: --- 10, [24507]
[2026-03-09 08:58:53] 2026-03-09 07:58:05,832 | INFO     | zombie collector waiting for pid 24507
[2026-03-09 08:58:53] 2026-03-09 07:58:05,832 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-09 08:58:53] 2026-03-09 07:58:05,833 | INFO     | collected zombie processes
[2026-03-09 08:58:53] 2026-03-09 07:58:05,833 | INFO     | will attempt to kill all subprocesses of pid=24507
[2026-03-09 08:58:53] 2026-03-09 07:58:05,953 | INFO     | process IDs to be killed: [24507] (in reverse order)
[2026-03-09 08:58:53] 2026-03-09 07:58:06,853 | WARNING  | found no corresponding commands to process id(s)
[2026-03-09 08:58:53] 2026-03-09 07:58:06,854 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-09 08:58:53] 2026-03-09 07:58:06,857 | INFO     | did not find any defunct processes belonging to 24507
[2026-03-09 08:58:53] 2026-03-09 07:58:06,859 | INFO     | did not find any defunct processes belonging to 24507
[2026-03-09 08:58:53] 2026-03-09 07:58:06,860 | INFO     | ready for new job
[2026-03-09 08:58:53] 2026-03-09 07:58:06,860 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-09 08:58:53] 2026-03-09 07:58:06,862 | INFO     | **************************************
[2026-03-09 08:58:53] 2026-03-09 07:58:06,862 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-09 08:58:53] 2026-03-09 07:58:06,862 | INFO     | **************************************
[2026-03-09 08:58:53] 2026-03-09 07:58:06,862 | INFO     | 
[2026-03-09 08:58:53] 2026-03-09 07:58:06,863 | INFO     | pilot is running in a VM
[2026-03-09 08:58:53] 2026-03-09 07:58:06,863 | INFO     | architecture information:
[2026-03-09 08:58:53] 2026-03-09 07:58:06,863 | INFO     | executing command: cat /etc/os-release
[2026-03-09 08:58:53] 2026-03-09 07:58:07,171 | INFO     | cat /etc/os-release:
[2026-03-09 08:58:53] NAME="CentOS Linux"
[2026-03-09 08:58:53] VERSION="7 (Core)"
[2026-03-09 08:58:53] ID="centos"
[2026-03-09 08:58:53] ID_LIKE="rhel fedora"
[2026-03-09 08:58:53] VERSION_ID="7"
[2026-03-09 08:58:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-09 08:58:53] ANSI_COLOR="0;31"
[2026-03-09 08:58:53] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-09 08:58:53] HOME_URL="https://www.centos.org/"
[2026-03-09 08:58:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-09 08:58:53] 
[2026-03-09 08:58:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-09 08:58:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-09 08:58:53] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-09 08:58:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-09 08:58:53] 
[2026-03-09 08:58:53] 2026-03-09 07:58:07,171 | INFO     | **************************************
[2026-03-09 08:58:53] 2026-03-09 07:58:07,675 | INFO     | executing command: df -mP /var/lib/boinc/slots/16
[2026-03-09 08:58:53] 2026-03-09 07:58:07,836 | INFO     | sufficient remaining disk space (494971912192 B)
[2026-03-09 08:58:53] 2026-03-09 07:58:07,836 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-09 08:58:53] 2026-03-09 07:58:07,836 | INFO     | current server update state: UPDATING_FINAL
[2026-03-09 08:58:53] 2026-03-09 07:58:07,836 | INFO     | update_server=False
[2026-03-09 08:58:53] 2026-03-09 07:58:07,836 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-09 08:58:53] 2026-03-09 07:58:07,837 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-09 08:58:53] 2026-03-09 07:58:07,855 | INFO     | all job control threads have been joined
[2026-03-09 08:58:53] 2026-03-09 07:58:07,981 | INFO     | all data control threads have been joined
[2026-03-09 08:58:53] 2026-03-09 07:58:08,006 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-09 08:58:53] 2026-03-09 07:58:08,190 | INFO     | all payload control threads have been joined
[2026-03-09 08:58:53] 2026-03-09 07:58:08,249 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-09 08:58:53] 2026-03-09 07:58:08,249 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-09 08:58:53] 2026-03-09 07:58:08,249 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-09 08:58:53] 2026-03-09 07:58:08,250 | INFO     | will abort loop
[2026-03-09 08:58:53] 2026-03-09 07:58:08,842 | INFO     | [job] retrieve thread has finished
[2026-03-09 08:58:53] 2026-03-09 07:58:08,861 | INFO     | [job] control thread has finished
[2026-03-09 08:58:53] 2026-03-09 07:58:08,987 | INFO     | [data] control thread has finished
[2026-03-09 08:58:53] 2026-03-09 07:58:09,191 | INFO     | [payload] failed_post thread has finished
[2026-03-09 08:58:53] 2026-03-09 07:58:09,196 | INFO     | [payload] control thread has finished
[2026-03-09 08:58:53] 2026-03-09 07:58:09,223 | INFO     | [payload] execute_payloads thread has finished
[2026-03-09 08:58:53] 2026-03-09 07:58:09,255 | INFO     | [job] job monitor thread has finished
[2026-03-09 08:58:53] 2026-03-09 07:58:09,259 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-09 08:58:53] 2026-03-09 07:58:09,504 | INFO     | [job] create_data_payload thread has finished
[2026-03-09 08:58:53] 2026-03-09 07:58:09,644 | INFO     | [job] validate thread has finished
[2026-03-09 08:58:53] 2026-03-09 07:58:09,810 | INFO     | [data] copytool_in thread has finished
[2026-03-09 08:58:53] 2026-03-09 07:58:09,853 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-09 08:58:53] 2026-03-09 07:58:10,013 | INFO     | [data] copytool_out thread has finished
[2026-03-09 08:58:53] 2026-03-09 07:58:10,138 | INFO     | [payload] validate_post thread has finished
[2026-03-09 08:58:53] 2026-03-09 07:58:10,196 | INFO     | [payload] validate_pre thread has finished
[2026-03-09 08:58:53] 2026-03-09 07:58:10,265 | INFO     | [job] queue monitor thread has finished
[2026-03-09 08:58:53] 2026-03-09 07:58:11,846 | INFO     | [data] queue_monitor thread has finished
[2026-03-09 08:58:53] 2026-03-09 07:58:37,394 | INFO     | PID=19970 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-09 08:58:53] 2026-03-09 07:58:37,395 | INFO     | .. there are 9 such processes running
[2026-03-09 08:58:53] 2026-03-09 07:58:37,396 | INFO     | found 0 job(s) in 20 queues
[2026-03-09 08:58:53] 2026-03-09 07:58:37,396 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-09 08:58:53] 2026-03-09 07:58:37,397 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-09 08:58:53] 2026-03-09 07:58:42,743 | INFO     | [monitor] cgroup control has ended
[2026-03-09 08:58:53] 2026-03-09 07:58:43,796 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140174330357568)>', '<ExcThread(monitor, started 140173723539200)>']
[2026-03-09 08:58:53] 2026-03-09 07:58:44,439 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-09 08:58:53] 2026-03-09 07:58:44,439 | INFO     | [monitor] control thread has ended
[2026-03-09 08:58:53] 2026-03-09 07:58:48,822 | INFO     | all workflow threads have been joined
[2026-03-09 08:58:53] 2026-03-09 07:58:48,822 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-09 08:58:53] 2026-03-09 07:58:48,823 | INFO     | traces error code: 0
[2026-03-09 08:58:53] 2026-03-09 07:58:48,823 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-09 08:58:53] 2026-03-09 07:58:49,188 [wrapper] ==== pilot stdout END ====
[2026-03-09 08:58:53] 2026-03-09 07:58:49,281 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-09 08:58:53] 2026-03-09 07:58:49,361 [wrapper] pilotpid: 19970
[2026-03-09 08:58:53] 2026-03-09 07:58:49,438 [wrapper] Pilot exit status: 0
[2026-03-09 08:58:53] 2026-03-09 07:58:49,917 [wrapper] pandaids: 7039904986
[2026-03-09 08:58:53] 2026-03-09 07:58:50,794 [wrapper] cleanup supervisor_pilot 32557 19971
[2026-03-09 08:58:53] 2026-03-09 07:58:50,898 [wrapper] Test setup, not cleaning
[2026-03-09 08:58:53] 2026-03-09 07:58:50,984 [wrapper] apfmon messages muted
[2026-03-09 08:58:53] 2026-03-09 07:58:51,079 [wrapper] ==== wrapper stdout END ====
[2026-03-09 08:58:53] 2026-03-09 07:58:51,172 [wrapper] ==== wrapper stderr END ====
[2026-03-09 08:58:53]  *** Error codes and diagnostics ***
[2026-03-09 08:58:53]     "exeErrorCode": 0,
[2026-03-09 08:58:53]     "exeErrorDiag": "",
[2026-03-09 08:58:53]     "pilotErrorCode": 0,
[2026-03-09 08:58:53]     "pilotErrorDiag": "",
[2026-03-09 08:58:53]  *** Listing of results directory ***
[2026-03-09 08:58:53] total 619472
[2026-03-09 08:58:53] -rw-r--r--. 1 boinc boinc    584627 Mar  8 14:48 pilot3.tar.gz
[2026-03-09 08:58:53] -rwx------. 1 boinc boinc     36322 Mar  8 14:52 runpilot2-wrapper.sh
[2026-03-09 08:58:53] -rw-r--r--. 1 boinc boinc      5111 Mar  8 14:52 queuedata.json
[2026-03-09 08:58:53] -rw-r--r--. 1 boinc boinc       100 Mar  9 04:56 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-09 08:58:53] -rwxr-xr-x. 1 boinc boinc      7986 Mar  9 04:56 run_atlas
[2026-03-09 08:58:53] -rw-r--r--. 1 boinc boinc       105 Mar  9 04:56 job.xml
[2026-03-09 08:58:53] -rw-r--r--. 2 boinc boinc 436789348 Mar  9 04:56 EVNT.46701403._000522.pool.root.1
[2026-03-09 08:58:53] -rw-r--r--. 2 boinc boinc     15845 Mar  9 04:56 start_atlas.sh
[2026-03-09 08:58:53] drwxrwx--x. 2 boinc boinc        68 Mar  9 04:56 shared
[2026-03-09 08:58:53] -rw-r--r--. 2 boinc boinc    597962 Mar  9 04:56 input.tar.gz
[2026-03-09 08:58:53] -rw-r--r--. 1 boinc boinc      6392 Mar  9 04:56 init_data.xml
[2026-03-09 08:58:53] -rw-r--r--. 1 boinc boinc         0 Mar  9 04:56 boinc_lockfile
[2026-03-09 08:58:53] -rw-r--r--. 1 boinc boinc      2565 Mar  9 04:57 pandaJob.out
[2026-03-09 08:58:53] -rw-------. 1 boinc boinc       415 Mar  9 05:02 workernode_map.json
[2026-03-09 08:58:53] -rw-------. 1 boinc boinc    999108 Mar  9 05:02 agis_schedconf.cvmfs.json
[2026-03-09 08:58:53] drwx------. 5 boinc boinc      4096 Mar  9 05:02 pilot3
[2026-03-09 08:58:53] -rw-------. 1 boinc boinc 188719053 Mar  9 08:56 HITS.48955006._026095.pool.root.1
[2026-03-09 08:58:53] -rw-r--r--. 1 boinc boinc       532 Mar  9 08:56 boinc_task_state.xml
[2026-03-09 08:58:53] -rw-------. 1 boinc boinc      1013 Mar  9 08:57 memory_monitor_summary.json
[2026-03-09 08:58:53] -rw-------. 1 boinc boinc   1511578 Mar  9 08:57 agis_ddmendpoints.agis.ALL.json
[2026-03-09 08:58:53] -rw-------. 1 boinc boinc    477272 Mar  9 08:57 log.48955006._026095.job.log.tgz.1
[2026-03-09 08:58:53] -rw-------. 1 boinc boinc      6323 Mar  9 08:58 heartbeat.json
[2026-03-09 08:58:53] -rw-------. 1 boinc boinc        95 Mar  9 08:58 pilot_heartbeat.json
[2026-03-09 08:58:53] -rw-------. 1 boinc boinc      5067 Mar  9 08:58 pilotlog.txt
[2026-03-09 08:58:53] -rw-------. 1 boinc boinc   1979052 Mar  9 08:58 log.48955006._026095.job.log.1
[2026-03-09 08:58:53] -rw-r--r--. 1 boinc boinc      8192 Mar  9 08:58 boinc_mmap_file
[2026-03-09 08:58:53] -rw-r--r--. 1 boinc boinc        28 Mar  9 08:58 wrapper_checkpoint.txt
[2026-03-09 08:58:53] -rw-------. 1 boinc boinc       357 Mar  9 08:58 output.list
[2026-03-09 08:58:53] -rw-r--r--. 1 boinc boinc       620 Mar  9 08:58 runtime_log
[2026-03-09 08:58:53] -rw-------. 1 boinc boinc   2478080 Mar  9 08:58 result.tar.gz
[2026-03-09 08:58:53] -rw-r--r--. 1 boinc boinc      8832 Mar  9 08:58 runtime_log.err
[2026-03-09 08:58:53] -rw-------. 1 boinc boinc       655 Mar  9 08:58 GC8NDmFjTJ9n9Rq4apOajLDm4fhM0noT9bVooX4SDmUvWLDmxyEoum.diag
[2026-03-09 08:58:53] -rw-r--r--. 1 boinc boinc     20736 Mar  9 08:58 stderr.txt
[2026-03-09 08:58:53] HITS file was successfully produced:
[2026-03-09 08:58:53] -rw-------. 1 boinc boinc 188719053 Mar  9 08:56 shared/HITS.pool.root.1
[2026-03-09 08:58:53]  *** Contents of shared directory: ***
[2026-03-09 08:58:53] total 613872
[2026-03-09 08:58:53] -rw-r--r--. 2 boinc boinc 436789348 Mar  9 04:56 ATLAS.root_0
[2026-03-09 08:58:53] -rw-r--r--. 2 boinc boinc     15845 Mar  9 04:56 start_atlas.sh
[2026-03-09 08:58:53] -rw-r--r--. 2 boinc boinc    597962 Mar  9 04:56 input.tar.gz
[2026-03-09 08:58:53] -rw-------. 1 boinc boinc 188719053 Mar  9 08:56 HITS.pool.root.1
[2026-03-09 08:58:53] -rw-------. 1 boinc boinc   2478080 Mar  9 08:58 result.tar.gz
08:58:54 (15854): run_atlas exited; CPU time 54231.607699
08:58:54 (15854): called boinc_finish(0)

</stderr_txt>
]]>

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