Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:48:11 (13073): wrapper (7.7.26015): starting
19:48:11 (13073): wrapper: running run_atlas (--nthreads 4)
[2026-03-08 19:48:11] Arguments: --nthreads 4
[2026-03-08 19:48:11] Threads: 4
[2026-03-08 19:48:11] Checking for CVMFS
[2026-03-08 19:48:11] No cvmfs_config command found, will try listing directly
[2026-03-08 19:48:11] CVMFS is ok
[2026-03-08 19:48:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-08 19:48:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-08 19:48:11] Further information can be found at the LHC@home message board.
[2026-03-08 19:48:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-08 19:48:11] Checking for apptainer binary...
[2026-03-08 19:48:11] which: no apptainer in ((null))
[2026-03-08 19:48:11] apptainer is not installed, using version from CVMFS
[2026-03-08 19:48:11] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-08 19:48:12] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot148/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut28.grid.cesnet.cz
[2026-03-08 19:48:12] apptainer works
[2026-03-08 19:48:12] Set ATHENA_PROC_NUMBER=4
[2026-03-08 19:48:12] Set ATHENA_CORE_NUMBER=4
[2026-03-08 19:48:12] Starting ATLAS job with PandaID=7039715650
[2026-03-08 19:48:12] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot148/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-08 21:12:38]  *** The last 200 lines of the pilot log: ***
[2026-03-08 21:12:38]  protocol_id=None
[2026-03-08 21:12:38]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-08 21:12:38]  replicas=None
[2026-03-08 21:12:38]  scope=mc23_13p6TeV
[2026-03-08 21:12:38]  status=None
[2026-03-08 21:12:38]  status_code=0
[2026-03-08 21:12:38]  storage_token=
[2026-03-08 21:12:38]  surl=/var/lib/boinc/var/slot148/slots/0/PanDA_Pilot-7039715650/log.48955006._024718.job.log.tgz.1
[2026-03-08 21:12:38]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/02/5a/log.48955006._024718.job.log.tgz.1
[2026-03-08 21:12:38]  workdir=None
[2026-03-08 21:12:38] ]
[2026-03-08 21:12:38] 2026-03-08 20:11:57,185 | INFO     | transferring file log.48955006._024718.job.log.tgz.1 from /var/lib/boinc/var/slot148/slots/0/PanDA_Pilot-7039715650/log.48955006._024718.job.log.tgz.1 to /var/lib/
[2026-03-08 21:12:38] 2026-03-08 20:11:57,185 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot148/slots/0/PanDA_Pilot-7039715650/log.48955006._024718.job.log.tgz.1 /var/lib/boinc/var/slot148/slots/0/
[2026-03-08 21:12:38] 2026-03-08 20:11:57,208 | INFO     | adding to output.list: log.48955006._024718.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/02/5a/log.48955006._024718.job.log.tg
[2026-03-08 21:12:38] 2026-03-08 20:11:57,209 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-08 21:12:38] 2026-03-08 20:11:57,209 | INFO     | summary of transferred files:
[2026-03-08 21:12:38] 2026-03-08 20:11:57,209 | INFO     |  -- lfn=log.48955006._024718.job.log.tgz.1, status_code=0, status=transferred
[2026-03-08 21:12:38] 2026-03-08 20:11:57,209 | INFO     | stage-out finished correctly
[2026-03-08 21:12:38] 2026-03-08 20:11:57,461 | WARNING  | process 32366 can no longer be monitored (due to stat problems) - aborting
[2026-03-08 21:12:38] 2026-03-08 20:11:57,461 | INFO     | using path: /var/lib/boinc/var/slot148/slots/0/PanDA_Pilot-7039715650/memory_monitor_summary.json (trf name=prmon)
[2026-03-08 21:12:38] 2026-03-08 20:11:57,870 | INFO     | time since job start (5013s) is within the limit (349056.0s)
[2026-03-08 21:12:38] 2026-03-08 20:11:57,938 | INFO     | number of running child processes to parent process 32366: 1
[2026-03-08 21:12:38] 2026-03-08 20:11:57,938 | INFO     | maximum number of monitored processes: 6
[2026-03-08 21:12:38] 2026-03-08 20:11:59,877 | INFO     | time since job start (5015s) is within the limit (349056.0s)
[2026-03-08 21:12:38] 2026-03-08 20:12:00,441 | INFO     | monitor loop #362: job 0:7039715650 is in state 'finished'
[2026-03-08 21:12:38] 2026-03-08 20:12:00,441 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-08 21:12:38] 2026-03-08 20:12:00,606 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-08 21:12:38] 2026-03-08 20:12:01,884 | INFO     | time since job start (5017s) is within the limit (349056.0s)
[2026-03-08 21:12:38] 2026-03-08 20:12:02,944 | INFO     | monitor loop #363: job 0:7039715650 is in state 'finished'
[2026-03-08 21:12:38] 2026-03-08 20:12:02,944 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-08 21:12:38] 2026-03-08 20:12:03,517 | INFO     | job 7039715650 has state=finished
[2026-03-08 21:12:38] 2026-03-08 20:12:03,517 | INFO     | preparing for final server update for job 7039715650 in state='finished'
[2026-03-08 21:12:38] 2026-03-08 20:12:03,517 | INFO     | reading metadata from: /var/lib/boinc/var/slot148/slots/0/PanDA_Pilot-7039715650/jobReport.json
[2026-03-08 21:12:38] 2026-03-08 20:12:03,519 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot148/slots/0/workernode_map.json
[2026-03-08 21:12:38] 2026-03-08 20:12:03,519 | INFO     | this job has now completed (state=finished)
[2026-03-08 21:12:38] 2026-03-08 20:12:03,519 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-08 21:12:38] 2026-03-08 20:12:03,519 | INFO     | log transfer has been attempted: DONE
[2026-03-08 21:12:38] 2026-03-08 20:12:03,519 | INFO     | job 7039715650 has finished - writing final server update
[2026-03-08 21:12:38] 2026-03-08 20:12:03,519 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_19178/.job.ad'
[2026-03-08 21:12:38] 2026-03-08 20:12:03,519 | INFO     | total number of processed events: 400 (read)
[2026-03-08 21:12:38] 2026-03-08 20:12:03,536 | INFO     | using path: /var/lib/boinc/var/slot148/slots/0/PanDA_Pilot-7039715650/memory_monitor_summary.json (trf name=prmon)
[2026-03-08 21:12:38] 2026-03-08 20:12:03,537 | INFO     | extracted standard info from prmon json
[2026-03-08 21:12:38] 2026-03-08 20:12:03,537 | INFO     | extracted standard memory fields from prmon json
[2026-03-08 21:12:38] 2026-03-08 20:12:03,537 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-08 21:12:38] 2026-03-08 20:12:03,537 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-08 21:12:38] 2026-03-08 20:12:03,537 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-08 21:12:38] 2026-03-08 20:12:03,538 | INFO     | fitting pss+swap vs Time
[2026-03-08 21:12:38] 2026-03-08 20:12:03,538 | INFO     | sum of square deviations: 130793150.0
[2026-03-08 21:12:38] 2026-03-08 20:12:03,538 | INFO     | sum of deviations: 575293501.0
[2026-03-08 21:12:38] 2026-03-08 20:12:03,538 | INFO     | mean x: 1772998286.0
[2026-03-08 21:12:38] 2026-03-08 20:12:03,538 | INFO     | mean y: 2325340.066666667
[2026-03-08 21:12:38] 2026-03-08 20:12:03,539 | INFO     | intersect: -7796205326.25599
[2026-03-08 21:12:38] 2026-03-08 20:12:03,539 | INFO     | chi2: 0.00016168589205620701
[2026-03-08 21:12:38] 2026-03-08 20:12:03,539 | INFO     | current memory leak: 4.40 B/s (using 75 data points, chi2=0.00)
[2026-03-08 21:12:38] 2026-03-08 20:12:03,539 | INFO     | could have reported an average CPU frequency of 3610 MHz (6 samples)
[2026-03-08 21:12:38] 2026-03-08 20:12:03,539 | INFO     | ..............................
[2026-03-08 21:12:38] 2026-03-08 20:12:03,539 | INFO     | . Timing measurements:
[2026-03-08 21:12:38] 2026-03-08 20:12:03,539 | INFO     | . get job = 0 s
[2026-03-08 21:12:38] 2026-03-08 20:12:03,539 | INFO     | . initial setup = 4 s
[2026-03-08 21:12:38] 2026-03-08 20:12:03,539 | INFO     | . payload setup = 4 s
[2026-03-08 21:12:38] 2026-03-08 20:12:03,539 | INFO     | . stage-in = 0 s
[2026-03-08 21:12:38] 2026-03-08 20:12:03,539 | INFO     | . payload execution = 4993 s
[2026-03-08 21:12:38] 2026-03-08 20:12:03,539 | INFO     | . stage-out = 0 s
[2026-03-08 21:12:38] 2026-03-08 20:12:03,539 | INFO     | . log creation = 0 s
[2026-03-08 21:12:38] 2026-03-08 20:12:03,539 | INFO     | ..............................
[2026-03-08 21:12:38] 2026-03-08 20:12:03,652 | INFO     | 
[2026-03-08 21:12:38] 2026-03-08 20:12:03,652 | INFO     | job summary report
[2026-03-08 21:12:38] 2026-03-08 20:12:03,652 | INFO     | --------------------------------------------------
[2026-03-08 21:12:38] 2026-03-08 20:12:03,652 | INFO     | PanDA job id: 7039715650
[2026-03-08 21:12:38] 2026-03-08 20:12:03,652 | INFO     | task id: 48955006
[2026-03-08 21:12:38] 2026-03-08 20:12:03,652 | INFO     | errors: (none)
[2026-03-08 21:12:38] 2026-03-08 20:12:03,652 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-08 21:12:38] 2026-03-08 20:12:03,652 | INFO     | pilot state: finished 
[2026-03-08 21:12:38] 2026-03-08 20:12:03,652 | INFO     | transexitcode: 0
[2026-03-08 21:12:38] 2026-03-08 20:12:03,652 | INFO     | exeerrorcode: 0
[2026-03-08 21:12:38] 2026-03-08 20:12:03,652 | INFO     | exeerrordiag: 
[2026-03-08 21:12:38] 2026-03-08 20:12:03,652 | INFO     | exitcode: 0
[2026-03-08 21:12:38] 2026-03-08 20:12:03,652 | INFO     | exitmsg: OK
[2026-03-08 21:12:38] 2026-03-08 20:12:03,652 | INFO     | cpuconsumptiontime: 19040 s
[2026-03-08 21:12:38] 2026-03-08 20:12:03,652 | INFO     | nevents: 400
[2026-03-08 21:12:38] 2026-03-08 20:12:03,653 | INFO     | neventsw: 0
[2026-03-08 21:12:38] 2026-03-08 20:12:03,653 | INFO     | pid: 32366
[2026-03-08 21:12:38] 2026-03-08 20:12:03,653 | INFO     | pgrp: 32366
[2026-03-08 21:12:38] 2026-03-08 20:12:03,653 | INFO     | corecount: 4
[2026-03-08 21:12:38] 2026-03-08 20:12:03,653 | INFO     | event service: False
[2026-03-08 21:12:38] 2026-03-08 20:12:03,653 | INFO     | sizes: {0: 2285913, 11: 2285913, 5001: 2312281, 5002: 2321303, 5005: 2321359, 5008: 2321553}
[2026-03-08 21:12:38] 2026-03-08 20:12:03,653 | INFO     | --------------------------------------------------
[2026-03-08 21:12:38] 2026-03-08 20:12:03,653 | INFO     | 
[2026-03-08 21:12:38] 2026-03-08 20:12:03,653 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot148/slots/0
[2026-03-08 21:12:38] 2026-03-08 20:12:03,673 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-08 21:12:38] 2026-03-08 20:12:03,673 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-08 21:12:38] 2026-03-08 20:12:03,673 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-08 21:12:38] 2026-03-08 20:12:03,673 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-08 21:12:38] 2026-03-08 20:12:03,673 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-08 21:12:38] 2026-03-08 20:12:03,673 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-08 21:12:38] 2026-03-08 20:12:03,673 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-08 21:12:38] 2026-03-08 20:12:03,673 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-08 21:12:38] 2026-03-08 20:12:03,673 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-08 21:12:38] 2026-03-08 20:12:03,673 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-08 21:12:38] 2026-03-08 20:12:03,673 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-08 21:12:38] 2026-03-08 20:12:03,673 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-08 21:12:38] 2026-03-08 20:12:03,673 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-08 21:12:38] 2026-03-08 20:12:03,673 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-08 21:12:38] 2026-03-08 20:12:03,673 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-08 21:12:38] 2026-03-08 20:12:03,673 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-08 21:12:38] 2026-03-08 20:12:03,673 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-08 21:12:38] 2026-03-08 20:12:03,674 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-08 21:12:38] 2026-03-08 20:12:03,674 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-08 21:12:38] 2026-03-08 20:12:03,674 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-08 21:12:38] 2026-03-08 20:12:03,674 | INFO     | job 7039715650 has completed (purged errors)
[2026-03-08 21:12:38] 2026-03-08 20:12:03,674 | INFO     | overall cleanup function is called
[2026-03-08 21:12:38] 2026-03-08 20:12:04,680 | INFO     | --- collectZombieJob: --- 10, [32366]
[2026-03-08 21:12:38] 2026-03-08 20:12:04,680 | INFO     | zombie collector waiting for pid 32366
[2026-03-08 21:12:38] 2026-03-08 20:12:04,680 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-08 21:12:38] 2026-03-08 20:12:04,680 | INFO     | collected zombie processes
[2026-03-08 21:12:38] 2026-03-08 20:12:04,680 | INFO     | will attempt to kill all subprocesses of pid=32366
[2026-03-08 21:12:38] 2026-03-08 20:12:05,147 | INFO     | process IDs to be killed: [32366] (in reverse order)
[2026-03-08 21:12:38] 2026-03-08 20:12:05,373 | WARNING  | found no corresponding commands to process id(s)
[2026-03-08 21:12:38] 2026-03-08 20:12:05,373 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-08 21:12:38] 2026-03-08 20:12:05,404 | INFO     | did not find any defunct processes belonging to 32366
[2026-03-08 21:12:38] 2026-03-08 20:12:05,435 | INFO     | did not find any defunct processes belonging to 32366
[2026-03-08 21:12:38] 2026-03-08 20:12:05,435 | INFO     | ready for new job
[2026-03-08 21:12:38] 2026-03-08 20:12:05,435 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-08 21:12:38] 2026-03-08 20:12:05,436 | INFO     | **************************************
[2026-03-08 21:12:38] 2026-03-08 20:12:05,436 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-08 21:12:38] 2026-03-08 20:12:05,436 | INFO     | **************************************
[2026-03-08 21:12:38] 2026-03-08 20:12:05,436 | INFO     | 
[2026-03-08 21:12:38] 2026-03-08 20:12:05,442 | INFO     | architecture information:
[2026-03-08 21:12:38] 2026-03-08 20:12:05,442 | INFO     | executing command: cat /etc/os-release
[2026-03-08 21:12:38] 2026-03-08 20:12:05,454 | INFO     | cat /etc/os-release:
[2026-03-08 21:12:38] NAME="CentOS Linux"
[2026-03-08 21:12:38] VERSION="7 (Core)"
[2026-03-08 21:12:38] ID="centos"
[2026-03-08 21:12:38] ID_LIKE="rhel fedora"
[2026-03-08 21:12:38] VERSION_ID="7"
[2026-03-08 21:12:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-08 21:12:38] ANSI_COLOR="0;31"
[2026-03-08 21:12:38] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-08 21:12:38] HOME_URL="https://www.centos.org/"
[2026-03-08 21:12:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-08 21:12:38] 
[2026-03-08 21:12:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-08 21:12:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-08 21:12:38] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-08 21:12:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-08 21:12:38] 
[2026-03-08 21:12:38] 2026-03-08 20:12:05,454 | INFO     | **************************************
[2026-03-08 21:12:38] 2026-03-08 20:12:05,957 | INFO     | executing command: df -mP /var/lib/boinc/var/slot148/slots/0
[2026-03-08 21:12:38] 2026-03-08 20:12:05,971 | INFO     | sufficient remaining disk space (20142096384 B)
[2026-03-08 21:12:38] 2026-03-08 20:12:05,971 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-08 21:12:38] 2026-03-08 20:12:05,971 | INFO     | current server update state: UPDATING_FINAL
[2026-03-08 21:12:38] 2026-03-08 20:12:05,971 | INFO     | update_server=False
[2026-03-08 21:12:38] 2026-03-08 20:12:05,971 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-08 21:12:38] 2026-03-08 20:12:05,971 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-08 21:12:38] 2026-03-08 20:12:06,451 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-08 21:12:38] 2026-03-08 20:12:06,452 | INFO     | aborting loop
[2026-03-08 21:12:38] 2026-03-08 20:12:06,658 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-08 21:12:38] 2026-03-08 20:12:06,962 | INFO     | all data control threads have been joined
[2026-03-08 21:12:38] 2026-03-08 20:12:06,976 | INFO     | [job] retrieve thread has finished
[2026-03-08 21:12:38] 2026-03-08 20:12:06,992 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-08 21:12:38] 2026-03-08 20:12:07,072 | INFO     | all payload control threads have been joined
[2026-03-08 21:12:38] 2026-03-08 20:12:07,120 | INFO     | [payload] validate_post thread has finished
[2026-03-08 21:12:38] 2026-03-08 20:12:07,247 | INFO     | [payload] failed_post thread has finished
[2026-03-08 21:12:38] 2026-03-08 20:12:07,288 | INFO     | all job control threads have been joined
[2026-03-08 21:12:38] 2026-03-08 20:12:07,456 | INFO     | [job] job monitor thread has finished
[2026-03-08 21:12:38] 2026-03-08 20:12:07,590 | INFO     | [job] validate thread has finished
[2026-03-08 21:12:38] 2026-03-08 20:12:07,793 | INFO     | [payload] validate_pre thread has finished
[2026-03-08 21:12:38] 2026-03-08 20:12:07,926 | INFO     | [job] create_data_payload thread has finished
[2026-03-08 21:12:38] 2026-03-08 20:12:07,967 | INFO     | [data] control thread has finished
[2026-03-08 21:12:38] 2026-03-08 20:12:07,971 | INFO     | [payload] execute_payloads thread has finished
[2026-03-08 21:12:38] 2026-03-08 20:12:07,976 | INFO     | [data] copytool_out thread has finished
[2026-03-08 21:12:38] 2026-03-08 20:12:08,075 | INFO     | [payload] control thread has finished
[2026-03-08 21:12:38] 2026-03-08 20:12:08,160 | INFO     | [data] copytool_in thread has finished
[2026-03-08 21:12:38] 2026-03-08 20:12:08,293 | INFO     | [job] control thread has finished
[2026-03-08 21:12:38] 2026-03-08 20:12:08,596 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-08 21:12:38] 2026-03-08 20:12:09,604 | INFO     | [job] queue monitor thread has finished
[2026-03-08 21:12:38] 2026-03-08 20:12:10,663 | INFO     | [data] queue_monitor thread has finished
[2026-03-08 21:12:38] 2026-03-08 20:12:31,961 | INFO     | [monitor] cgroup control has ended
[2026-03-08 21:12:38] 2026-03-08 20:12:33,050 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23259603859264)>', '<ExcThread(monitor, started 23259363157760)>']
[2026-03-08 21:12:38] 2026-03-08 20:12:35,506 | INFO     | PID=17911 has CPU usage=8.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-08 21:12:38] 2026-03-08 20:12:35,507 | INFO     | .. there are 46 such processes running
[2026-03-08 21:12:38] 2026-03-08 20:12:35,507 | INFO     | found 0 job(s) in 20 queues
[2026-03-08 21:12:38] 2026-03-08 20:12:35,507 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-08 21:12:38] 2026-03-08 20:12:35,507 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-08 21:12:38] 2026-03-08 20:12:35,507 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-08 21:12:38] 2026-03-08 20:12:35,507 | INFO     | [monitor] control thread has ended
[2026-03-08 21:12:38] 2026-03-08 20:12:38,075 | INFO     | all workflow threads have been joined
[2026-03-08 21:12:38] 2026-03-08 20:12:38,075 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-08 21:12:38] 2026-03-08 20:12:38,075 | INFO     | traces error code: 0
[2026-03-08 21:12:38] 2026-03-08 20:12:38,075 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-08 21:12:38] 2026-03-08 20:12:38,194 [wrapper] ==== pilot stdout END ====
[2026-03-08 21:12:38] 2026-03-08 20:12:38,200 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-08 21:12:38] 2026-03-08 20:12:38,201 [wrapper] pilotpid: 17911
[2026-03-08 21:12:38] 2026-03-08 20:12:38,203 [wrapper] Pilot exit status: 0
[2026-03-08 21:12:38] 2026-03-08 20:12:38,209 [wrapper] pandaids: 7039715650
[2026-03-08 21:12:38] 2026-03-08 20:12:38,332 [wrapper] cleanup supervisor_pilot  629994 17912
[2026-03-08 21:12:38] 2026-03-08 20:12:38,334 [wrapper] Test setup, not cleaning
[2026-03-08 21:12:38] 2026-03-08 20:12:38,337 [wrapper] apfmon messages muted
[2026-03-08 21:12:38] 2026-03-08 20:12:38,339 [wrapper] ==== wrapper stdout END ====
[2026-03-08 21:12:38] 2026-03-08 20:12:38,340 [wrapper] ==== wrapper stderr END ====
[2026-03-08 21:12:38]  *** Error codes and diagnostics ***
[2026-03-08 21:12:38]     "exeErrorCode": 0,
[2026-03-08 21:12:38]     "exeErrorDiag": "",
[2026-03-08 21:12:38]     "pilotErrorCode": 0,
[2026-03-08 21:12:38]     "pilotErrorDiag": "",
[2026-03-08 21:12:38]  *** Listing of results directory ***
[2026-03-08 21:12:38] total 624084
[2026-03-08 21:12:38] -rw-r--r--. 1 boinc boinc    584627 Mar  8 10:02 pilot3.tar.gz
[2026-03-08 21:12:38] -rwx------. 1 boinc boinc     36322 Mar  8 10:46 runpilot2-wrapper.sh
[2026-03-08 21:12:38] -rw-r--r--. 1 boinc boinc      5111 Mar  8 10:46 queuedata.json
[2026-03-08 21:12:38] -rw-r--r--. 1 boinc boinc       100 Mar  8 19:48 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-08 21:12:38] -rwxr-xr-x. 1 boinc boinc      7986 Mar  8 19:48 run_atlas
[2026-03-08 21:12:38] -rw-r--r--. 1 boinc boinc       105 Mar  8 19:48 job.xml
[2026-03-08 21:12:38] -rw-r--r--. 1 boinc boinc      6706 Mar  8 19:48 init_data.xml
[2026-03-08 21:12:38] -rw-r--r--. 2 boinc boinc 447523786 Mar  8 19:48 EVNT.46701403._000494.pool.root.1
[2026-03-08 21:12:38] -rw-r--r--. 2 boinc boinc     15845 Mar  8 19:48 start_atlas.sh
[2026-03-08 21:12:38] drwxrwx--x. 2 boinc boinc      4096 Mar  8 19:48 shared
[2026-03-08 21:12:38] -rw-r--r--. 2 boinc boinc    597956 Mar  8 19:48 input.tar.gz
[2026-03-08 21:12:38] -rw-r--r--. 1 boinc boinc         0 Mar  8 19:48 boinc_lockfile
[2026-03-08 21:12:38] -rw-r--r--. 1 boinc boinc      2564 Mar  8 19:48 pandaJob.out
[2026-03-08 21:12:38] -rw-------. 1 boinc boinc    999212 Mar  8 19:48 agis_schedconf.cvmfs.json
[2026-03-08 21:12:38] -rw-------. 1 boinc boinc   1514803 Mar  8 19:48 agis_ddmendpoints.agis.ALL.json
[2026-03-08 21:12:38] -rw-------. 1 boinc boinc       445 Mar  8 19:48 workernode_map.json
[2026-03-08 21:12:38] drwx------. 5 boinc boinc      4096 Mar  8 19:48 pilot3
[2026-03-08 21:12:38] -rw-------. 1 boinc boinc 185532301 Mar  8 21:11 HITS.48955006._024718.pool.root.1
[2026-03-08 21:12:38] -rw-r--r--. 1 boinc boinc       530 Mar  8 21:11 boinc_task_state.xml
[2026-03-08 21:12:38] -rw-------. 1 boinc boinc      1030 Mar  8 21:11 memory_monitor_summary.json
[2026-03-08 21:12:38] -rw-------. 1 boinc boinc    311643 Mar  8 21:11 log.48955006._024718.job.log.tgz.1
[2026-03-08 21:12:38] -rw-------. 1 boinc boinc      6356 Mar  8 21:12 heartbeat.json
[2026-03-08 21:12:38] -rw-r--r--. 1 boinc boinc        27 Mar  8 21:12 wrapper_checkpoint.txt
[2026-03-08 21:12:38] -rw-------. 1 boinc boinc        95 Mar  8 21:12 pilot_heartbeat.json
[2026-03-08 21:12:38] -rw-------. 1 boinc boinc      4828 Mar  8 21:12 pilotlog.txt
[2026-03-08 21:12:38] -rw-r--r--. 1 boinc boinc      8192 Mar  8 21:12 boinc_mmap_file
[2026-03-08 21:12:38] -rw-------. 1 boinc boinc    730567 Mar  8 21:12 log.48955006._024718.job.log.1
[2026-03-08 21:12:38] -rw-------. 1 boinc boinc       357 Mar  8 21:12 output.list
[2026-03-08 21:12:38] -rw-r--r--. 1 boinc boinc       620 Mar  8 21:12 runtime_log
[2026-03-08 21:12:38] -rw-------. 1 boinc boinc   1054720 Mar  8 21:12 result.tar.gz
[2026-03-08 21:12:38] -rw-r--r--. 1 boinc boinc      9221 Mar  8 21:12 runtime_log.err
[2026-03-08 21:12:38] -rw-------. 1 boinc boinc       662 Mar  8 21:12 joKODmGtPJ9n9Rq4apOajLDm4fhM0noT9bVooX4SDmjOWLDmZACb6n.diag
[2026-03-08 21:12:38] -rw-r--r--. 1 boinc boinc     18592 Mar  8 21:12 stderr.txt
[2026-03-08 21:12:38] HITS file was successfully produced:
[2026-03-08 21:12:38] -rw-------. 1 boinc boinc 185532301 Mar  8 21:11 shared/HITS.pool.root.1
[2026-03-08 21:12:38]  *** Contents of shared directory: ***
[2026-03-08 21:12:38] total 619860
[2026-03-08 21:12:38] -rw-r--r--. 2 boinc boinc 447523786 Mar  8 19:48 ATLAS.root_0
[2026-03-08 21:12:38] -rw-r--r--. 2 boinc boinc     15845 Mar  8 19:48 start_atlas.sh
[2026-03-08 21:12:38] -rw-r--r--. 2 boinc boinc    597956 Mar  8 19:48 input.tar.gz
[2026-03-08 21:12:38] -rw-------. 1 boinc boinc 185532301 Mar  8 21:11 HITS.pool.root.1
[2026-03-08 21:12:38] -rw-------. 1 boinc boinc   1054720 Mar  8 21:12 result.tar.gz
21:12:39 (13073): run_atlas exited; CPU time 19263.693383
21:12:39 (13073): called boinc_finish(0)

</stderr_txt>
]]>

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