Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
22:27:39 (1060707): wrapper (7.7.26015): starting
22:27:39 (1060707): wrapper: running run_atlas (--nthreads 12)
[2026-03-08 22:27:39] Arguments: --nthreads 12
[2026-03-08 22:27:39] Threads: 12
[2026-03-08 22:27:39] Checking for CVMFS
[2026-03-08 22:27:39] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-08 22:27:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-08 22:27:40] Running cvmfs_config stat atlas.cern.ch
[2026-03-08 22:27:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-08 22:27:41] 2.12.7.0 991347 16618 72860 157061 1 55 3281782 4194304 2751 130560 0 38747241 99.997 595910 1855 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.150.1:3128 1
[2026-03-08 22:27:41] CVMFS is ok
[2026-03-08 22:27:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-08 22:27:41] Checking for apptainer binary...
[2026-03-08 22:27:41] apptainer is not installed, using version from CVMFS
[2026-03-08 22:27:41] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-08 22:27:41] Trebeth
[2026-03-08 22:27:41] apptainer works
[2026-03-08 22:27:41] Set ATHENA_PROC_NUMBER=12
[2026-03-08 22:27:41] Set ATHENA_CORE_NUMBER=12
[2026-03-08 22:27:41] Starting ATLAS job with PandaID=7040403714
[2026-03-08 22:27:41] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-08 23:33:07]  *** The last 200 lines of the pilot log: ***
[2026-03-08 23:33:07]  guid=309af47c-402a-407a-85c4-6ede7e2f6dff
[2026-03-08 23:33:07]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-08 23:33:07]  is_altstaged=None
[2026-03-08 23:33:07]  is_tar=False
[2026-03-08 23:33:07]  lfn=log.48973452._000986.job.log.tgz.1
[2026-03-08 23:33:07]  mtime=0
[2026-03-08 23:33:07]  protocol_id=None
[2026-03-08 23:33:07]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-08 23:33:07]  replicas=None
[2026-03-08 23:33:07]  scope=mc23_13p6TeV
[2026-03-08 23:33:07]  status=None
[2026-03-08 23:33:07]  status_code=0
[2026-03-08 23:33:07]  storage_token=
[2026-03-08 23:33:07]  surl=/var/lib/boinc-client/slots/3/PanDA_Pilot-7040403714/log.48973452._000986.job.log.tgz.1
[2026-03-08 23:33:07]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/21/18/log.48973452._000986.job.log.tgz.1
[2026-03-08 23:33:07]  workdir=None
[2026-03-08 23:33:07] ]
[2026-03-08 23:33:07] 2026-03-09 03:32:04,877 | INFO     | transferring file log.48973452._000986.job.log.tgz.1 from /var/lib/boinc-client/slots/3/PanDA_Pilot-7040403714/log.48973452._000986.job.log.tgz.1 to /var/lib/boinc
[2026-03-08 23:33:07] 2026-03-09 03:32:04,878 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/3/PanDA_Pilot-7040403714/log.48973452._000986.job.log.tgz.1 /var/lib/boinc-client/slots/3/log.489734
[2026-03-08 23:33:07] 2026-03-09 03:32:04,892 | INFO     | adding to output.list: log.48973452._000986.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/21/18/log.48973452._000986.job.log.tg
[2026-03-08 23:33:07] 2026-03-09 03:32:04,893 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-08 23:33:07] 2026-03-09 03:32:04,893 | INFO     | summary of transferred files:
[2026-03-08 23:33:07] 2026-03-09 03:32:04,893 | INFO     |  -- lfn=log.48973452._000986.job.log.tgz.1, status_code=0, status=transferred
[2026-03-08 23:33:07] 2026-03-09 03:32:04,894 | INFO     | stage-out finished correctly
[2026-03-08 23:33:07] 2026-03-09 03:32:06,067 | WARNING  | process 1069860 can no longer be monitored (due to stat problems) - aborting
[2026-03-08 23:33:07] 2026-03-09 03:32:06,067 | INFO     | using path: /var/lib/boinc-client/slots/3/PanDA_Pilot-7040403714/memory_monitor_summary.json (trf name=prmon)
[2026-03-08 23:33:07] 2026-03-09 03:32:06,194 | INFO     | number of running child processes to parent process 1069860: 1
[2026-03-08 23:33:07] 2026-03-09 03:32:06,195 | INFO     | maximum number of monitored processes: 6
[2026-03-08 23:33:07] 2026-03-09 03:32:06,695 | INFO     | time since job start (3850s) is within the limit (349056.0s)
[2026-03-08 23:33:07] 2026-03-09 03:32:08,105 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-08 23:33:07] 2026-03-09 03:32:08,153 | INFO     | job 7040403714 has state=finished
[2026-03-08 23:33:07] 2026-03-09 03:32:08,154 | INFO     | preparing for final server update for job 7040403714 in state='finished'
[2026-03-08 23:33:07] 2026-03-09 03:32:08,154 | INFO     | reading metadata from: /var/lib/boinc-client/slots/3/PanDA_Pilot-7040403714/jobReport.json
[2026-03-08 23:33:07] 2026-03-09 03:32:08,157 | INFO     | added worker_node to metadata from /var/lib/boinc-client/slots/3/workernode_map.json
[2026-03-08 23:33:07] 2026-03-09 03:32:08,157 | INFO     | this job has now completed (state=finished)
[2026-03-08 23:33:07] 2026-03-09 03:32:08,158 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-08 23:33:07] 2026-03-09 03:32:08,158 | INFO     | log transfer has been attempted: DONE
[2026-03-08 23:33:07] 2026-03-09 03:32:08,158 | INFO     | job 7040403714 has finished - writing final server update
[2026-03-08 23:33:07] 2026-03-09 03:32:08,158 | INFO     | total number of processed events: 400 (read)
[2026-03-08 23:33:07] 2026-03-09 03:32:08,190 | INFO     | using path: /var/lib/boinc-client/slots/3/PanDA_Pilot-7040403714/memory_monitor_summary.json (trf name=prmon)
[2026-03-08 23:33:07] 2026-03-09 03:32:08,191 | INFO     | extracted standard info from prmon json
[2026-03-08 23:33:07] 2026-03-09 03:32:08,191 | INFO     | extracted standard memory fields from prmon json
[2026-03-08 23:33:07] 2026-03-09 03:32:08,191 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-08 23:33:07] 2026-03-09 03:32:08,191 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-08 23:33:07] 2026-03-09 03:32:08,191 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-08 23:33:07] 2026-03-09 03:32:08,192 | INFO     | fitting pss+swap vs Time
[2026-03-08 23:33:07] 2026-03-09 03:32:08,192 | INFO     | sum of square deviations: 54438230.0
[2026-03-08 23:33:07] 2026-03-09 03:32:08,192 | INFO     | sum of deviations: -1070280441.0
[2026-03-08 23:33:07] 2026-03-09 03:32:08,192 | INFO     | mean x: 1773025278.5
[2026-03-08 23:33:07] 2026-03-09 03:32:08,192 | INFO     | mean y: 2794996.5
[2026-03-08 23:33:07] 2026-03-09 03:32:08,192 | INFO     | intersect: 34861280971.83623
[2026-03-08 23:33:07] 2026-03-09 03:32:08,193 | INFO     | chi2: 0.14457975909571716
[2026-03-08 23:33:07] 2026-03-09 03:32:08,193 | INFO     | current memory leak: -19.66 B/s (using 56 data points, chi2=0.14)
[2026-03-08 23:33:07] 2026-03-09 03:32:08,193 | INFO     | could have reported an average CPU frequency of 2493 MHz (6 samples)
[2026-03-08 23:33:07] 2026-03-09 03:32:08,193 | INFO     | ..............................
[2026-03-08 23:33:07] 2026-03-09 03:32:08,193 | INFO     | . Timing measurements:
[2026-03-08 23:33:07] 2026-03-09 03:32:08,193 | INFO     | . get job = 0 s
[2026-03-08 23:33:07] 2026-03-09 03:32:08,193 | INFO     | . initial setup = 6 s
[2026-03-08 23:33:07] 2026-03-09 03:32:08,193 | INFO     | . payload setup = 4 s
[2026-03-08 23:33:07] 2026-03-09 03:32:08,193 | INFO     | . stage-in = 0 s
[2026-03-08 23:33:07] 2026-03-09 03:32:08,193 | INFO     | . payload execution = 3828 s
[2026-03-08 23:33:07] 2026-03-09 03:32:08,193 | INFO     | . stage-out = 0 s
[2026-03-08 23:33:07] 2026-03-09 03:32:08,193 | INFO     | . log creation = 0 s
[2026-03-08 23:33:07] 2026-03-09 03:32:08,193 | INFO     | ..............................
[2026-03-08 23:33:07] 2026-03-09 03:32:08,325 | INFO     | 
[2026-03-08 23:33:07] 2026-03-09 03:32:08,325 | INFO     | job summary report
[2026-03-08 23:33:07] 2026-03-09 03:32:08,326 | INFO     | --------------------------------------------------
[2026-03-08 23:33:07] 2026-03-09 03:32:08,326 | INFO     | PanDA job id: 7040403714
[2026-03-08 23:33:07] 2026-03-09 03:32:08,326 | INFO     | task id: 48973452
[2026-03-08 23:33:07] 2026-03-09 03:32:08,326 | INFO     | errors: (none)
[2026-03-08 23:33:07] 2026-03-09 03:32:08,326 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-08 23:33:07] 2026-03-09 03:32:08,326 | INFO     | pilot state: finished 
[2026-03-08 23:33:07] 2026-03-09 03:32:08,326 | INFO     | transexitcode: 0
[2026-03-08 23:33:07] 2026-03-09 03:32:08,326 | INFO     | exeerrorcode: 0
[2026-03-08 23:33:07] 2026-03-09 03:32:08,327 | INFO     | exeerrordiag: 
[2026-03-08 23:33:07] 2026-03-09 03:32:08,327 | INFO     | exitcode: 0
[2026-03-08 23:33:07] 2026-03-09 03:32:08,327 | INFO     | exitmsg: OK
[2026-03-08 23:33:07] 2026-03-09 03:32:08,327 | INFO     | cpuconsumptiontime: 40216 s
[2026-03-08 23:33:07] 2026-03-09 03:32:08,327 | INFO     | nevents: 400
[2026-03-08 23:33:07] 2026-03-09 03:32:08,327 | INFO     | neventsw: 0
[2026-03-08 23:33:07] 2026-03-09 03:32:08,327 | INFO     | pid: 1069860
[2026-03-08 23:33:07] 2026-03-09 03:32:08,327 | INFO     | pgrp: 1069860
[2026-03-08 23:33:07] 2026-03-09 03:32:08,327 | INFO     | corecount: 12
[2026-03-08 23:33:07] 2026-03-09 03:32:08,328 | INFO     | event service: False
[2026-03-08 23:33:07] 2026-03-09 03:32:08,328 | INFO     | sizes: {0: 2279841, 1: 2280302, 11: 2280302, 3837: 2306165, 3838: 2315177, 3841: 2315555}
[2026-03-08 23:33:07] 2026-03-09 03:32:08,328 | INFO     | --------------------------------------------------
[2026-03-08 23:33:07] 2026-03-09 03:32:08,328 | INFO     | 
[2026-03-08 23:33:07] 2026-03-09 03:32:08,328 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/3
[2026-03-08 23:33:07] 2026-03-09 03:32:08,341 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-08 23:33:07] 2026-03-09 03:32:08,342 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-08 23:33:07] 2026-03-09 03:32:08,342 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-08 23:33:07] 2026-03-09 03:32:08,342 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-08 23:33:07] 2026-03-09 03:32:08,342 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-08 23:33:07] 2026-03-09 03:32:08,342 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-08 23:33:07] 2026-03-09 03:32:08,342 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-08 23:33:07] 2026-03-09 03:32:08,343 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-08 23:33:07] 2026-03-09 03:32:08,343 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-08 23:33:07] 2026-03-09 03:32:08,343 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-08 23:33:07] 2026-03-09 03:32:08,343 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-08 23:33:07] 2026-03-09 03:32:08,343 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-08 23:33:07] 2026-03-09 03:32:08,343 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-08 23:33:07] 2026-03-09 03:32:08,343 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-08 23:33:07] 2026-03-09 03:32:08,343 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-08 23:33:07] 2026-03-09 03:32:08,343 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-08 23:33:07] 2026-03-09 03:32:08,344 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-08 23:33:07] 2026-03-09 03:32:08,344 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-08 23:33:07] 2026-03-09 03:32:08,344 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-08 23:33:07] 2026-03-09 03:32:08,344 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-08 23:33:07] 2026-03-09 03:32:08,344 | INFO     | job 7040403714 has completed (purged errors)
[2026-03-08 23:33:07] 2026-03-09 03:32:08,344 | INFO     | overall cleanup function is called
[2026-03-08 23:33:07] 2026-03-09 03:32:09,352 | INFO     | --- collectZombieJob: --- 10, [1069860]
[2026-03-08 23:33:07] 2026-03-09 03:32:09,353 | INFO     | zombie collector waiting for pid 1069860
[2026-03-08 23:33:07] 2026-03-09 03:32:09,353 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-08 23:33:07] 2026-03-09 03:32:09,353 | INFO     | collected zombie processes
[2026-03-08 23:33:07] 2026-03-09 03:32:09,353 | INFO     | will attempt to kill all subprocesses of pid=1069860
[2026-03-08 23:33:07] 2026-03-09 03:32:09,490 | INFO     | process IDs to be killed: [1069860] (in reverse order)
[2026-03-08 23:33:07] 2026-03-09 03:32:09,563 | WARNING  | found no corresponding commands to process id(s)
[2026-03-08 23:33:07] 2026-03-09 03:32:09,563 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-08 23:33:07] 2026-03-09 03:32:09,570 | INFO     | did not find any defunct processes belonging to 1069860
[2026-03-08 23:33:07] 2026-03-09 03:32:09,573 | INFO     | did not find any defunct processes belonging to 1069860
[2026-03-08 23:33:07] 2026-03-09 03:32:09,573 | INFO     | ready for new job
[2026-03-08 23:33:07] 2026-03-09 03:32:09,573 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-08 23:33:07] 2026-03-09 03:32:09,574 | INFO     | **************************************
[2026-03-08 23:33:07] 2026-03-09 03:32:09,574 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-08 23:33:07] 2026-03-09 03:32:09,574 | INFO     | **************************************
[2026-03-08 23:33:07] 2026-03-09 03:32:09,574 | INFO     | 
[2026-03-08 23:33:07] 2026-03-09 03:32:09,598 | INFO     | architecture information:
[2026-03-08 23:33:07] 2026-03-09 03:32:09,599 | INFO     | executing command: cat /etc/os-release
[2026-03-08 23:33:07] 2026-03-09 03:32:09,610 | INFO     | cat /etc/os-release:
[2026-03-08 23:33:07] NAME="CentOS Linux"
[2026-03-08 23:33:07] VERSION="7 (Core)"
[2026-03-08 23:33:07] ID="centos"
[2026-03-08 23:33:07] ID_LIKE="rhel fedora"
[2026-03-08 23:33:07] VERSION_ID="7"
[2026-03-08 23:33:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-08 23:33:07] ANSI_COLOR="0;31"
[2026-03-08 23:33:07] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-08 23:33:07] HOME_URL="https://www.centos.org/"
[2026-03-08 23:33:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-08 23:33:07] 
[2026-03-08 23:33:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-08 23:33:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-08 23:33:07] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-08 23:33:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-08 23:33:07] 
[2026-03-08 23:33:07] 2026-03-09 03:32:09,610 | INFO     | **************************************
[2026-03-08 23:33:07] 2026-03-09 03:32:10,113 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/3
[2026-03-08 23:33:07] 2026-03-09 03:32:10,131 | INFO     | sufficient remaining disk space (395254431744 B)
[2026-03-08 23:33:07] 2026-03-09 03:32:10,131 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-08 23:33:07] 2026-03-09 03:32:10,132 | INFO     | current server update state: UPDATING_FINAL
[2026-03-08 23:33:07] 2026-03-09 03:32:10,132 | INFO     | update_server=False
[2026-03-08 23:33:07] 2026-03-09 03:32:10,132 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-08 23:33:07] 2026-03-09 03:32:10,132 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-08 23:33:07] 2026-03-09 03:32:10,132 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-08 23:33:07] 2026-03-09 03:32:10,133 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-08 23:33:07] 2026-03-09 03:32:10,133 | INFO     | aborting loop
[2026-03-08 23:33:07] 2026-03-09 03:32:10,453 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-08 23:33:07] 2026-03-09 03:32:10,970 | INFO     | all data control threads have been joined
[2026-03-08 23:33:07] 2026-03-09 03:32:11,138 | INFO     | [job] retrieve thread has finished
[2026-03-08 23:33:07] 2026-03-09 03:32:11,139 | INFO     | [job] queue monitor thread has finished
[2026-03-08 23:33:07] 2026-03-09 03:32:11,139 | INFO     | [job] job monitor thread has finished
[2026-03-08 23:33:07] 2026-03-09 03:32:11,201 | INFO     | all job control threads have been joined
[2026-03-08 23:33:07] 2026-03-09 03:32:11,224 | INFO     | [payload] failed_post thread has finished
[2026-03-08 23:33:07] 2026-03-09 03:32:11,255 | INFO     | [payload] validate_pre thread has finished
[2026-03-08 23:33:07] 2026-03-09 03:32:11,265 | INFO     | all payload control threads have been joined
[2026-03-08 23:33:07] 2026-03-09 03:32:11,366 | INFO     | [payload] execute_payloads thread has finished
[2026-03-08 23:33:07] 2026-03-09 03:32:11,467 | INFO     | [data] copytool_in thread has finished
[2026-03-08 23:33:07] 2026-03-09 03:32:11,804 | INFO     | [payload] validate_post thread has finished
[2026-03-08 23:33:07] 2026-03-09 03:32:11,973 | INFO     | [data] control thread has finished
[2026-03-08 23:33:07] 2026-03-09 03:32:12,207 | INFO     | [job] control thread has finished
[2026-03-08 23:33:07] 2026-03-09 03:32:12,271 | INFO     | [payload] control thread has finished
[2026-03-08 23:33:07] 2026-03-09 03:32:12,416 | INFO     | [job] validate thread has finished
[2026-03-08 23:33:07] 2026-03-09 03:32:12,458 | INFO     | [data] copytool_out thread has finished
[2026-03-08 23:33:07] 2026-03-09 03:32:12,539 | INFO     | [job] create_data_payload thread has finished
[2026-03-08 23:33:07] 2026-03-09 03:32:14,139 | INFO     | [data] queue_monitor thread has finished
[2026-03-08 23:33:07] 2026-03-09 03:32:21,002 | INFO     | job.realtimelogging is not enabled
[2026-03-08 23:33:07] 2026-03-09 03:32:22,008 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-08 23:33:07] 2026-03-09 03:32:39,991 | INFO     | PID=1065080 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-08 23:33:07] 2026-03-09 03:32:39,991 | INFO     | .. there are 4 such processes running
[2026-03-08 23:33:07] 2026-03-09 03:32:39,991 | INFO     | found 0 job(s) in 20 queues
[2026-03-08 23:33:07] 2026-03-09 03:32:39,992 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-08 23:33:07] 2026-03-09 03:32:39,992 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-08 23:33:07] 2026-03-09 03:33:01,614 | INFO     | [monitor] cgroup control has ended
[2026-03-08 23:33:07] 2026-03-09 03:33:02,084 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140314276939584)>', '<ExcThread(monitor, started 140313611982592)>']
[2026-03-08 23:33:07] 2026-03-09 03:33:02,086 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-08 23:33:07] 2026-03-09 03:33:02,087 | INFO     | [monitor] control thread has ended
[2026-03-08 23:33:07] 2026-03-09 03:33:07,109 | INFO     | all workflow threads have been joined
[2026-03-08 23:33:07] 2026-03-09 03:33:07,109 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-08 23:33:07] 2026-03-09 03:33:07,109 | INFO     | traces error code: 0
[2026-03-08 23:33:07] 2026-03-09 03:33:07,110 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-08 23:33:07] 2026-03-09 03:33:07,188 [wrapper] ==== pilot stdout END ====
[2026-03-08 23:33:07] 2026-03-09 03:33:07,191 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-08 23:33:07] 2026-03-09 03:33:07,193 [wrapper] pilotpid: 1065080
[2026-03-08 23:33:07] 2026-03-09 03:33:07,195 [wrapper] Pilot exit status: 0
[2026-03-08 23:33:07] 2026-03-09 03:33:07,204 [wrapper] pandaids: 7040403714
[2026-03-08 23:33:07] 2026-03-09 03:33:07,238 [wrapper] cleanup supervisor_pilot 1100173 1065081
[2026-03-08 23:33:07] 2026-03-09 03:33:07,240 [wrapper] Test setup, not cleaning
[2026-03-08 23:33:07] 2026-03-09 03:33:07,243 [wrapper] apfmon messages muted
[2026-03-08 23:33:07] 2026-03-09 03:33:07,245 [wrapper] ==== wrapper stdout END ====
[2026-03-08 23:33:07] 2026-03-09 03:33:07,247 [wrapper] ==== wrapper stderr END ====
[2026-03-08 23:33:07]  *** Error codes and diagnostics ***
[2026-03-08 23:33:07]     "exeErrorCode": 0,
[2026-03-08 23:33:07]     "exeErrorDiag": "",
[2026-03-08 23:33:07]     "pilotErrorCode": 0,
[2026-03-08 23:33:07]     "pilotErrorDiag": "",
[2026-03-08 23:33:07]  *** Listing of results directory ***
[2026-03-08 23:33:07] total 506388
[2026-03-08 23:33:07] -rw-r--r-- 1 boinc boinc    584627 Mar  4 12:22 pilot3.tar.gz
[2026-03-08 23:33:07] -rwx------ 1 boinc boinc     36322 Mar  4 12:47 runpilot2-wrapper.sh
[2026-03-08 23:33:07] -rw-r--r-- 1 boinc boinc      5111 Mar  4 12:48 queuedata.json
[2026-03-08 23:33:07] -rw-r--r-- 1 boinc boinc       100 Mar  8 22:27 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-08 23:33:07] -rwxr-xr-x 1 boinc boinc      7986 Mar  8 22:27 run_atlas
[2026-03-08 23:33:07] -rw-r--r-- 1 boinc boinc       105 Mar  8 22:27 job.xml
[2026-03-08 23:33:07] -rw-r--r-- 1 boinc boinc      7579 Mar  8 22:27 init_data.xml
[2026-03-08 23:33:07] -rw-r--r-- 2 boinc boinc 296250342 Mar  8 22:27 EVNT.48717224._000040.pool.root.1
[2026-03-08 23:33:07] -rw-r--r-- 2 boinc boinc     15845 Mar  8 22:27 start_atlas.sh
[2026-03-08 23:33:07] drwxrwx--x 2 boinc boinc      4096 Mar  8 22:27 shared
[2026-03-08 23:33:07] -rw-r--r-- 2 boinc boinc    597957 Mar  8 22:27 input.tar.gz
[2026-03-08 23:33:07] -rw-r--r-- 1 boinc boinc         0 Mar  8 22:27 boinc_lockfile
[2026-03-08 23:33:07] -rw-r--r-- 1 boinc boinc      2593 Mar  8 22:27 pandaJob.out
[2026-03-08 23:33:07] -rw------- 1 boinc boinc        50 Mar  8 22:27 setup.sh.local
[2026-03-08 23:33:07] -rw------- 1 boinc boinc    999108 Mar  8 22:27 agis_schedconf.cvmfs.json
[2026-03-08 23:33:07] -rw------- 1 boinc boinc   1511578 Mar  8 22:27 agis_ddmendpoints.agis.ALL.json
[2026-03-08 23:33:07] -rw------- 1 boinc boinc       429 Mar  8 22:27 workernode_map.json
[2026-03-08 23:33:07] drwx------ 5 boinc boinc      4096 Mar  8 22:27 pilot3
[2026-03-08 23:33:07] -rw------- 1 boinc boinc 216444752 Mar  8 23:31 HITS.48973452._000986.pool.root.1
[2026-03-08 23:33:07] -rw------- 1 boinc boinc        95 Mar  8 23:31 pilot_heartbeat.json
[2026-03-08 23:33:07] -rw------- 1 boinc boinc      1027 Mar  8 23:32 memory_monitor_summary.json
[2026-03-08 23:33:07] -rw-r--r-- 1 boinc boinc       529 Mar  8 23:32 boinc_task_state.xml
[2026-03-08 23:33:07] -rw------- 1 boinc boinc    373026 Mar  8 23:32 log.48973452._000986.job.log.tgz.1
[2026-03-08 23:33:07] -rw------- 1 boinc boinc      6329 Mar  8 23:32 heartbeat.json
[2026-03-08 23:33:07] -rw-r--r-- 1 boinc boinc      8192 Mar  8 23:33 boinc_mmap_file
[2026-03-08 23:33:07] -rw-r--r-- 1 boinc boinc        27 Mar  8 23:33 wrapper_checkpoint.txt
[2026-03-08 23:33:07] -rw------- 1 boinc boinc      4899 Mar  8 23:33 pilotlog.txt
[2026-03-08 23:33:07] -rw------- 1 boinc boinc    583825 Mar  8 23:33 log.48973452._000986.job.log.1
[2026-03-08 23:33:07] -rw------- 1 boinc boinc       357 Mar  8 23:33 output.list
[2026-03-08 23:33:07] -rw-r--r-- 1 boinc boinc       620 Mar  8 23:33 runtime_log
[2026-03-08 23:33:07] -rw------- 1 boinc boinc    972800 Mar  8 23:33 result.tar.gz
[2026-03-08 23:33:07] -rw-r--r-- 1 boinc boinc      9403 Mar  8 23:33 runtime_log.err
[2026-03-08 23:33:07] -rw------- 1 boinc boinc       650 Mar  8 23:33 hn5NDmuU5H9n9Rq4apOajLDm4fhM0noT9bVooX4SDmnGJLDmkutSRn.diag
[2026-03-08 23:33:07] -rw-r--r-- 1 boinc boinc     21118 Mar  8 23:33 stderr.txt
[2026-03-08 23:33:07] HITS file was successfully produced:
[2026-03-08 23:33:07] -rw------- 1 boinc boinc 216444752 Mar  8 23:31 shared/HITS.pool.root.1
[2026-03-08 23:33:07]  *** Contents of shared directory: ***
[2026-03-08 23:33:07] total 502240
[2026-03-08 23:33:07] -rw-r--r-- 2 boinc boinc 296250342 Mar  8 22:27 ATLAS.root_0
[2026-03-08 23:33:07] -rw-r--r-- 2 boinc boinc     15845 Mar  8 22:27 start_atlas.sh
[2026-03-08 23:33:07] -rw-r--r-- 2 boinc boinc    597957 Mar  8 22:27 input.tar.gz
[2026-03-08 23:33:07] -rw------- 1 boinc boinc 216444752 Mar  8 23:31 HITS.pool.root.1
[2026-03-08 23:33:07] -rw------- 1 boinc boinc    972800 Mar  8 23:33 result.tar.gz
23:33:08 (1060707): run_atlas exited; CPU time 40296.185450
23:33:08 (1060707): called boinc_finish(0)

</stderr_txt>
]]>

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